Every function. Every struct. Every data key. Cited, compiled, open source. Built by the minions.
| Type | Name | Signature | Module | Category | Data Keys |
|---|---|---|---|---|---|
| fn | element | element(n: Int, sym: String, nm: String, m: Float, en: Float, g: Int, p: Int, b: String, c: String) -> Element | periodic | Chemistry | -- |
| fn | unknown_element | unknown_element() -> Element | periodic | Chemistry | -- |
| fn | lookup_element | lookup_element(z: Int) -> Element | periodic | Chemistry | -- |
| fn | element_by_symbol | element_by_symbol(sym: String) -> Element | periodic | Chemistry | H, He, Li, Be, B, C, N, O, F, Ne, ... (+108) |
| fn | atomic_mass | atomic_mass(sym: String) -> Float | periodic | Chemistry | -- |
| fn | electronegativity | electronegativity(sym: String) -> Float | periodic | Chemistry | -- |
| fn | element_count | element_count() -> Int | periodic | Chemistry | -- |
| fn | is_valid_atomic_number | is_valid_atomic_number(z: Int) -> Bool | periodic | Chemistry | -- |
| struct | Element | struct { atomic_number: Int, symbol: String, name: String, atomic_mass: Float, electronegativity: Float, group: Int, period: Int, block: String, category: String } | periodic | Chemistry | -- |
| fn | indicator | indicator(n: String, lc: String, hc: String, tl: Float, th: Float, it: String, ci: String) -> PHIndicator | acid_base | Chemistry | -- |
| fn | buffer | buffer(n: String, af: String, bf: String, pk: Float, br: String, nr: String, ci: String) -> BufferSystem | acid_base | Chemistry | -- |
| fn | abg | abg(p: String, nl: Float, nh: Float, u: String, lc: String, hc: String, ci: String) -> BloodGasValue | acid_base | Chemistry | -- |
| fn | lookup_indicator | lookup_indicator(name: String) -> PHIndicator | acid_base | Chemistry | litmus, phenolphthalein, bromothymol_blue, methyl_orange, methyl_red, congo_red, thymol_blue, phenol_red, universal, pH_paper |
| fn | lookup_buffer | lookup_buffer(name: String) -> BufferSystem | acid_base | Chemistry | bicarbonate, phosphate, protein, ammonia |
| fn | lookup_abg | lookup_abg(param: String) -> BloodGasValue | acid_base | Chemistry | pH, pCO2, HCO3, pO2, SaO2, base_excess, anion_gap |
| fn | classify_ph | classify_ph(ph: Float) -> String | acid_base | Chemistry | -- |
| fn | common_ph | common_ph(substance: String) -> Float | acid_base | Chemistry | stomach_acid, lemon_juice, vinegar, orange_juice, coffee, urine, milk, pure_water, blood, seawater, ... (+5) |
| fn | indicator_count | indicator_count() -> Int | acid_base | Chemistry | -- |
| fn | buffer_count | buffer_count() -> Int | acid_base | Chemistry | -- |
| fn | abg_parameter_count | abg_parameter_count() -> Int | acid_base | Chemistry | -- |
| fn | blood_ph_normal_low | blood_ph_normal_low() -> Float | acid_base | Chemistry | -- |
| fn | blood_ph_normal_high | blood_ph_normal_high() -> Float | acid_base | Chemistry | -- |
| struct | PHIndicator | struct { name: String, low_color: String, high_color: String, transition_ph_low: Float, transition_ph_high: Float, indicator_type: String, citation: String } | acid_base | Chemistry | -- |
| struct | BufferSystem | struct { name: String, acid_form: String, base_form: String, pka: Float, biological_role: String, normal_range: String, citation: String } | acid_base | Chemistry | -- |
| struct | BloodGasValue | struct { parameter: String, normal_low: Float, normal_high: Float, unit: String, low_condition: String, high_condition: String, citation: String } | acid_base | Chemistry | -- |
| fn | make_acid | make_acid(n: String, f: String, ka: Float, pka: Float, cb: String, at: String, pi: Int, ci: String) -> BronstedAcid | bronsted_lowry | Chemistry | -- |
| fn | make_base | make_base(n: String, f: String, kb: Float, pkb: Float, ca: String, bt: String, ci: String) -> BronstedBase | bronsted_lowry | Chemistry | -- |
| fn | make_buffer | make_buffer(n: String, af: String, bf: String, pk: Float, el: Float, eh: Float, pr: String, bu: String, ci: String) -> BufferInfo | bronsted_lowry | Chemistry | -- |
| fn | make_indicator | make_indicator(n: String, lc: String, hc: String, tl: Float, th: Float, ic: String, ci: String) -> PHIndicatorInfo | bronsted_lowry | Chemistry | -- |
| fn | bronsted_acid | bronsted_acid(name: String) -> BronstedAcid | bronsted_lowry | Chemistry | HCl, HBr, HI, HNO3, H2SO4, H2SO4_2, HClO4, acetic, formic, benzoic, ... (+26) |
| fn | bronsted_base | bronsted_base(name: String) -> BronstedBase | bronsted_lowry | Chemistry | NaOH, KOH, Ca(OH)2, Ba(OH)2, ammonia, acetate, formate, bicarbonate, carbonate, phosphate_mono, ... (+6) |
| fn | henderson_hasselbalch | henderson_hasselbalch(pka: Float, conc_acid: Float, conc_base: Float) -> Float | bronsted_lowry | Chemistry | -- |
| fn | pka_from_ka | pka_from_ka(ka: Float) -> Float | bronsted_lowry | Chemistry | -- |
| fn | ka_from_pka | ka_from_pka(pka: Float) -> Float | bronsted_lowry | Chemistry | -- |
| fn | pkb_from_pka | pkb_from_pka(pka: Float) -> Float | bronsted_lowry | Chemistry | -- |
| fn | ph_strong_acid | ph_strong_acid(concentration: Float) -> Float | bronsted_lowry | Chemistry | -- |
| fn | ph_strong_base | ph_strong_base(concentration: Float) -> Float | bronsted_lowry | Chemistry | -- |
| fn | ph_weak_acid | ph_weak_acid(ka: Float, concentration: Float) -> Float | bronsted_lowry | Chemistry | -- |
| fn | poh_from_ph | poh_from_ph(ph: Float) -> Float | bronsted_lowry | Chemistry | -- |
| fn | h_from_ph | h_from_ph(ph: Float) -> Float | bronsted_lowry | Chemistry | -- |
| fn | oh_from_poh | oh_from_poh(poh: Float) -> Float | bronsted_lowry | Chemistry | -- |
| fn | buffer_capacity | buffer_capacity(conc_total: Float, ka: Float, h_concentration: Float) -> Float | bronsted_lowry | Chemistry | -- |
| fn | dilution | dilution(c1: Float, v1: Float, v2: Float) -> Float | bronsted_lowry | Chemistry | -- |
| fn | titration_equivalence_volume | titration_equivalence_volume(conc_acid: Float, vol_acid: Float, conc_base: Float) -> Float | bronsted_lowry | Chemistry | -- |
| fn | percent_ionization | percent_ionization(ka: Float, concentration: Float) -> Float | bronsted_lowry | Chemistry | -- |
| fn | ph_from_h | ph_from_h(h: Float) -> Float | bronsted_lowry | Chemistry | -- |
| fn | kw_25c | kw_25c() -> Float | bronsted_lowry | Chemistry | -- |
| fn | buffer | buffer(name: String) -> BufferInfo | bronsted_lowry | Chemistry | acetate, phosphate, tris, bicarbonate, HEPES, citrate, MOPS, PIPES |
| fn | blood_buffer | blood_buffer() -> BloodBufferState | bronsted_lowry | Chemistry | -- |
| fn | blood_ph_from_pco2 | blood_ph_from_pco2(pco2_mmhg: Float, hco3_meq_l: Float) -> Float | bronsted_lowry | Chemistry | -- |
| fn | classify_abg | classify_abg(ph: Float, pco2: Float, hco3: Float) -> ABGClassification | bronsted_lowry | Chemistry | -- |
| fn | anion_gap | anion_gap(sodium: Float, chloride: Float, bicarbonate: Float) -> Float | bronsted_lowry | Chemistry | -- |
| fn | classify_anion_gap | classify_anion_gap(ag: Float) -> String | bronsted_lowry | Chemistry | -- |
| fn | indicator | indicator(name: String) -> PHIndicatorInfo | bronsted_lowry | Chemistry | phenolphthalein, methyl_orange, bromothymol_blue, litmus, methyl_red, thymol_blue, thymol_blue_alkaline, phenol_red, congo_red, alizarin_yellow, ... (+1) |
| fn | bronsted_acid_count | bronsted_acid_count() -> Int | bronsted_lowry | Chemistry | -- |
| fn | bronsted_base_count | bronsted_base_count() -> Int | bronsted_lowry | Chemistry | -- |
| fn | buffer_system_count | buffer_system_count() -> Int | bronsted_lowry | Chemistry | -- |
| fn | indicator_count | indicator_count() -> Int | bronsted_lowry | Chemistry | -- |
| fn | water_kw | water_kw() -> Float | bronsted_lowry | Chemistry | -- |
| fn | water_ph | water_ph() -> Float | bronsted_lowry | Chemistry | -- |
| fn | physiological_ph | physiological_ph() -> Float | bronsted_lowry | Chemistry | -- |
| fn | body_temperature_kelvin | body_temperature_kelvin() -> Float | bronsted_lowry | Chemistry | -- |
| struct | BronstedAcid | struct { name: String, formula: String, ka: Float, pka: Float, conjugate_base: String, acid_type: String, proton_index: Int, citation: String } | bronsted_lowry | Chemistry | -- |
| struct | BronstedBase | struct { name: String, formula: String, kb: Float, pkb: Float, conjugate_acid: String, base_type: String, citation: String } | bronsted_lowry | Chemistry | -- |
| struct | BufferInfo | struct { name: String, acid_form: String, base_form: String, pka: Float, effective_low: Float, effective_high: Float, preparation: String, biological_use: String, citation: String } | bronsted_lowry | Chemistry | -- |
| struct | BloodBufferState | struct { ph: Float, pco2_mmhg: Float, hco3_meq_l: Float, normal_ph_low: Float, normal_ph_high: Float, normal_pco2_low: Float, normal_pco2_high: Float, normal_hco3_low: Float, normal_hco3_high: Float, citation: String } | bronsted_lowry | Chemistry | -- |
| struct | ABGClassification | struct { primary_disorder: String, ph_status: String, respiratory_component: String, metabolic_component: String, compensation: String, citation: String } | bronsted_lowry | Chemistry | -- |
| struct | PHIndicatorInfo | struct { name: String, low_color: String, high_color: String, transition_low: Float, transition_high: Float, indicator_class: String, citation: String } | bronsted_lowry | Chemistry | -- |
| fn | codon | codon(s: String, aa: String, t: String, start: Bool, stop: Bool) -> Codon | codons | Molecular Biology | -- |
| fn | unknown_codon | unknown_codon(s: String) -> Codon | codons | Molecular Biology | -- |
| fn | lookup_codon | lookup_codon(seq: String) -> Codon | codons | Molecular Biology | UUU, UUC, UUA, UUG, CUU, CUC, CUA, CUG, AUU, AUC, ... (+54) |
| fn | transcribe_dna | transcribe_dna(dna: String) -> String | codons | Molecular Biology | T |
| fn | find_start | find_start(mrna: String) -> Int | codons | Molecular Biology | AUG |
| fn | translate | translate(mrna: String) -> String | codons | Molecular Biology | -- |
| fn | translate_from | translate_from(mrna: String, frame_start: Int) -> String | codons | Molecular Biology | -- |
| fn | codon_count | codon_count() -> Int | codons | Molecular Biology | -- |
| fn | stop_codon_count | stop_codon_count() -> Int | codons | Molecular Biology | -- |
| fn | coding_codon_count | coding_codon_count() -> Int | codons | Molecular Biology | -- |
| struct | Codon | struct { sequence: String, amino_acid: String, three_letter: String, is_start: Bool, is_stop: Bool } | codons | Molecular Biology | -- |
| fn | aa | aa(addr: Int, c1: String, c3: String, nm: String, f: String, m: Float, rm: Float, sc: String, h: Float, e: Bool) -> AminoAcid | amino_acids | Molecular Biology | -- |
| fn | unknown_aa | unknown_aa() -> AminoAcid | amino_acids | Molecular Biology | -- |
| fn | lookup_amino_acid | lookup_amino_acid(addr: Int) -> AminoAcid | amino_acids | Molecular Biology | -- |
| fn | amino_acid_by_code1 | amino_acid_by_code1(c: String) -> AminoAcid | amino_acids | Molecular Biology | A, R, N, D, C, E, Q, G, H, I, ... (+10) |
| fn | amino_acid_by_code3 | amino_acid_by_code3(c: String) -> AminoAcid | amino_acids | Molecular Biology | Ala, Arg, Asn, Asp, Cys, Glu, Gln, Gly, His, Ile, ... (+10) |
| fn | peptide_mass | peptide_mass(sequence: String) -> Float | amino_acids | Molecular Biology | -- |
| fn | amino_acid_count | amino_acid_count() -> Int | amino_acids | Molecular Biology | -- |
| fn | is_essential | is_essential(c: String) -> Bool | amino_acids | Molecular Biology | -- |
| struct | AminoAcid | struct { address: Int, code1: String, code3: String, name: String, formula: String, mass: Float, residue_mass: Float, side_chain: String, hydrophobicity: Float, essential: Bool } | amino_acids | Molecular Biology | -- |
| fn | base | base(s: String, n: String, bt: String, na: String, f: String, m: Float, pw: String, bo: String, ci: String) -> NucleoBase | nucleosides | Molecular Biology | -- |
| fn | nside | nside(s: String, n: String, b: String, su: String, f: String, m: Float, na: String, ci: String) -> Nucleoside | nucleosides | Molecular Biology | -- |
| fn | ntide | ntide(s: String, n: String, b: String, p: Int, f: String, m: Float, na: String, r: String, ci: String) -> Nucleotide | nucleosides | Molecular Biology | -- |
| fn | lookup_base | lookup_base(symbol: String) -> NucleoBase | nucleosides | Molecular Biology | A, G, C, T, U, 5mC, I |
| fn | lookup_nucleoside | lookup_nucleoside(symbol: String) -> Nucleoside | nucleosides | Molecular Biology | dA, dG, dC, dT, rA, rG, rC, rU |
| fn | lookup_nucleotide | lookup_nucleotide(symbol: String) -> Nucleotide | nucleosides | Molecular Biology | dAMP, dGMP, dCMP, dTMP, dATP, dGTP, dCTP, dTTP, ATP, GTP, ... (+7) |
| fn | base_pairs_with | base_pairs_with(b: String, nucleic_acid: String) -> String | nucleosides | Molecular Biology | A, DNA, RNA, T, G, C, U |
| fn | hydrogen_bonds | hydrogen_bonds(base1: String, base2: String) -> Int | nucleosides | Molecular Biology | G, C, G, C |
| fn | is_purine | is_purine(b: String) -> Bool | nucleosides | Molecular Biology | A, G |
| fn | is_pyrimidine | is_pyrimidine(b: String) -> Bool | nucleosides | Molecular Biology | C, T, U |
| fn | tm_wallace | tm_wallace(a_count: Int, t_count: Int, g_count: Int, c_count: Int) -> Float | nucleosides | Molecular Biology | -- |
| fn | base_count | base_count() -> Int | nucleosides | Molecular Biology | -- |
| fn | nucleoside_count | nucleoside_count() -> Int | nucleosides | Molecular Biology | -- |
| fn | nucleotide_count | nucleotide_count() -> Int | nucleosides | Molecular Biology | -- |
| fn | dna_bases | dna_bases() -> String | nucleosides | Molecular Biology | -- |
| fn | rna_bases | rna_bases() -> String | nucleosides | Molecular Biology | -- |
| struct | NucleoBase | struct { symbol: String, name: String, base_type: String, nucleic_acid: String, formula: String, mass: Float, pairs_with: String, bond_type: String, citation: String } | nucleosides | Molecular Biology | -- |
| struct | Nucleoside | struct { symbol: String, name: String, base: String, sugar: String, formula: String, mass: Float, nucleic_acid: String, citation: String } | nucleosides | Molecular Biology | -- |
| struct | Nucleotide | struct { symbol: String, name: String, base: String, phosphates: Int, formula: String, mass: Float, nucleic_acid: String, role: String, citation: String } | nucleosides | Molecular Biology | -- |
| fn | rprot | rprot(a: String, g: String, n: String, r: String, l: String, ci: String) -> ReplicationProtein | dna_replication | Molecular Biology | -- |
| fn | replication_enzyme | replication_enzyme(name: String) -> ReplicationProtein | dna_replication | Molecular Biology | MCM_helicase, CDC45, RPA, primase, pol_epsilon, pol_delta, pol_alpha, PCNA, RFC, FEN1, ... (+4) |
| fn | replication_step | replication_step(step: Int) -> String | dna_replication | Molecular Biology | -- |
| fn | replication_step_count | replication_step_count() -> Int | dna_replication | Molecular Biology | -- |
| struct | ReplicationProtein | struct { accession: String, gene: String, name: String, role: String, location: String, citation: String } | dna_replication | Molecular Biology | -- |
| fn | aars | aars(aa: String, c1: String, en: String, ac: String, ge: String, sc: String, ci: String) -> AminoacylSynthetase | trna | Molecular Biology | -- |
| fn | rstep | rstep(sn: Int, ph: String, de: String, kf: String, fa: String, ec: String, ci: String) -> RibosomalStep | trna | Molecular Biology | -- |
| fn | lookup_synthetase | lookup_synthetase(code1: String) -> AminoacylSynthetase | trna | Molecular Biology | A, R, N, D, C, E, Q, G, H, I, ... (+10) |
| fn | translation_step | translation_step(step: Int) -> RibosomalStep | trna | Molecular Biology | -- |
| fn | translation_energy_cost | translation_energy_cost() -> String | trna | Molecular Biology | -- |
| fn | translation_step_count | translation_step_count() -> Int | trna | Molecular Biology | -- |
| fn | synthetase_count | synthetase_count() -> Int | trna | Molecular Biology | -- |
| struct | AminoacylSynthetase | struct { amino_acid: String, code1: String, enzyme_name: String, accession: String, gene: String, synthetase_class: String, citation: String } | trna | Molecular Biology | -- |
| struct | RibosomalStep | struct { step_number: Int, phase: String, description: String, key_factor: String, factor_accession: String, energy_cost: String, citation: String } | trna | Molecular Biology | -- |
| fn | sc_state | sc_state(s: String, ln: String, e: String, d: String) -> SupercoilState | supercoiling | Molecular Biology | -- |
| fn | topo | topo(n: String, a: String, g: String, t: String, m: String, d: String, c: String, ci: String) -> Topoisomerase | supercoiling | Molecular Biology | -- |
| fn | sc_reg | sc_reg(tr: String, ea: String, eg: String, cc: String, te: String, tg: String, ci: String) -> SupercoilRegulation | supercoiling | Molecular Biology | -- |
| fn | lookup_supercoil_state | lookup_supercoil_state(name: String) -> SupercoilState | supercoiling | Molecular Biology | negative, positive, relaxed |
| fn | lookup_topoisomerase | lookup_topoisomerase(name: String) -> Topoisomerase | supercoiling | Molecular Biology | TOP1, TOP3A, TOP3B, TOP2A, TOP2B |
| fn | stress_supercoiling | stress_supercoiling(trigger: String) -> SupercoilRegulation | supercoiling | Molecular Biology | cortisol_activation, transcription_elongation, replication_stress |
| fn | topo_drug | topo_drug(drug_name: String) -> String | supercoiling | Molecular Biology | camptothecin, irinotecan, topotecan, etoposide, doxorubicin, mitoxantrone |
| fn | relaxed_twist | relaxed_twist(base_pairs: Int) -> Float | supercoiling | Molecular Biology | -- |
| fn | superhelical_density | superhelical_density(lk: Float, lk0: Float) -> Float | supercoiling | Molecular Biology | -- |
| fn | typical_in_vivo_sigma | typical_in_vivo_sigma() -> Float | supercoiling | Molecular Biology | -- |
| fn | topoisomerase_count | topoisomerase_count() -> Int | supercoiling | Molecular Biology | -- |
| fn | is_gene_accessible | is_gene_accessible(sc: String) -> Bool | supercoiling | Molecular Biology | negative, relaxed |
| struct | SupercoilState | struct { coil_state: String, linking_number_change: String, effect_on_transcription: String, description: String } | supercoiling | Molecular Biology | -- |
| struct | Topoisomerase | struct { name: String, accession: String, gene: String, topo_type: String, mechanism: String, drug_target: String, clinical_use: String, citation: String } | supercoiling | Molecular Biology | -- |
| struct | SupercoilRegulation | struct { trigger: String, enzyme_accession: String, enzyme_gene: String, coiling_change: String, transcription_effect: String, target_genes: String, citation: String } | supercoiling | Molecular Biology | -- |
| fn | mark | mark(n: String, t: String, e: String, d: String) -> HistoneMark | epigenetics | Molecular Biology | -- |
| fn | cascade | cascade(th: String, ra: String, rg: String, ma: String, mg: String, hm: String, tg: String, ta: String, ef: String, co: String, ci: String) -> EpigeneticCascade | epigenetics | Molecular Biology | -- |
| fn | silenced | silenced(g: String, a: String, p: String, hm: String, sb: String, cc: String, ci: String) -> SilencedGene | epigenetics | Molecular Biology | -- |
| fn | lookup_histone_mark | lookup_histone_mark(name: String) -> HistoneMark | epigenetics | Molecular Biology | H3K9me2, H3K9me3, H3K27me3, H4K20me3, H3K4me3, H3K36me3, H3K9ac, H3K27ac, 5mC, 5hmC |
| fn | cortisol_cascade | cortisol_cascade(target: String) -> EpigeneticCascade | epigenetics | Molecular Biology | BDNF, NR3C1, FKBP5, OXTR, SLC6A4 |
| fn | genes_silenced_by | genes_silenced_by(hormone: String, duration: String) -> Int | epigenetics | Molecular Biology | cortisol, chronic, acute |
| fn | silenced_gene_by_index | silenced_gene_by_index(hormone: String, index: Int) -> SilencedGene | epigenetics | Molecular Biology | cortisol |
| fn | methyltransferase_for_mark | methyltransferase_for_mark(mark_name: String) -> String | epigenetics | Molecular Biology | H3K9me2, H3K9me3, H3K27me3, H3K4me3, 5mC |
| fn | methyltransferase_gene | methyltransferase_gene(mark_name: String) -> String | epigenetics | Molecular Biology | H3K9me2, H3K9me3, H3K27me3, H3K4me3, 5mC |
| fn | demethylase_for_mark | demethylase_for_mark(mark_name: String) -> String | epigenetics | Molecular Biology | H3K9me2, H3K9me3, H3K27me3, H3K4me3, 5mC |
| fn | demethylase_gene | demethylase_gene(mark_name: String) -> String | epigenetics | Molecular Biology | H3K9me2, H3K9me3, H3K27me3, H3K4me3, 5mC |
| fn | is_silencing_mark | is_silencing_mark(name: String) -> Bool | epigenetics | Molecular Biology | -- |
| fn | is_activating_mark | is_activating_mark(name: String) -> Bool | epigenetics | Molecular Biology | -- |
| fn | histone_mark_count | histone_mark_count() -> Int | epigenetics | Molecular Biology | -- |
| fn | cortisol_target_count | cortisol_target_count() -> Int | epigenetics | Molecular Biology | -- |
| struct | HistoneMark | struct { name: String, mark_type: String, effect: String, description: String } | epigenetics | Molecular Biology | -- |
| struct | EpigeneticCascade | struct { trigger_hormone: String, receptor_accession: String, receptor_gene: String, methyltransferase_accession: String, methyltransferase_gene: String, histone_mark: String, target_gene: String, target_accession: String, effect: String, consequence: String, citation: String } | epigenetics | Molecular Biology | -- |
| struct | SilencedGene | struct { gene: String, accession: String, protein_name: String, histone_mark: String, silenced_by: String, clinical_consequence: String, citation: String } | epigenetics | Molecular Biology | -- |
| fn | opcomp | opcomp(n: String, g: String, a: String, r: String, d: String, ci: String) -> OperonComponent | gene_regulation | Molecular Biology | -- |
| fn | txfactor | txfactor(n: String, g: String, a: String, tc: String, dm: String, r: String, d: String, ci: String) -> TranscriptionFactor | gene_regulation | Molecular Biology | -- |
| fn | regelem | regelem(n: String, et: String, td: String, me: String, kp: String, ka: String, d: String, ci: String) -> RegulatoryElement | gene_regulation | Molecular Biology | -- |
| fn | remodeler | remodeler(n: String, cf: String, a: String, g: String, me: String, ad: Bool, d: String, ci: String) -> ChromatinRemodeler | gene_regulation | Molecular Biology | -- |
| fn | rnaproc | rnaproc(n: String, et: String, ke: String, a: String, me: String, d: String, ci: String) -> RNAProcessingEvent | gene_regulation | Molecular Biology | -- |
| fn | rnai | rnai(n: String, p: String, a: String, g: String, r: String, d: String, ci: String) -> RNAiComponent | gene_regulation | Molecular Biology | -- |
| fn | transctrl | transctrl(n: String, p: String, kp: String, a: String, me: String, d: String, ci: String) -> TranslationalControl | gene_regulation | Molecular Biology | -- |
| fn | sigreg | sigreg(n: String, p: String, kp: String, a: String, tr: String, me: String, tg: String, d: String, ci: String) -> SignalRegulation | gene_regulation | Molecular Biology | -- |
| fn | crispr | crispr(n: String, ct: String, a: String, o: String, r: String, d: String, ci: String) -> CRISPRComponent | gene_regulation | Molecular Biology | -- |
| fn | splvar | splvar(n: String, vt: String, me: String, eg: String, d: String, ci: String) -> SplicingVariant | gene_regulation | Molecular Biology | -- |
| fn | gtf | gtf(n: String, a: String, g: String, ao: Int, r: String, d: String, ci: String) -> GeneralTF | gene_regulation | Molecular Biology | -- |
| fn | lac_operon_component | lac_operon_component(name: String) -> OperonComponent | gene_regulation | Molecular Biology | lacZ, lacY, lacA, lacI, lacO, lacP, CAP, allolactose |
| fn | trp_operon_component | trp_operon_component(name: String) -> OperonComponent | gene_regulation | Molecular Biology | trpR, trpE, trpD, trpC, trpB, trpA, trpL |
| fn | operon_logic | operon_logic(operon: String, glucose: Bool, inducer: Bool) -> String | gene_regulation | Molecular Biology | lac, trp |
| fn | rna_pol_ii | rna_pol_ii(subunit: String) -> OperonComponent | gene_regulation | Molecular Biology | RPB1, RPB2, RPB3 |
| fn | general_tf | general_tf(name: String) -> GeneralTF | gene_regulation | Molecular Biology | TFIID, TFIIA, TFIIB, TFIIF, TFIIE, TFIIH |
| fn | mediator_complex | mediator_complex() -> OperonComponent | gene_regulation | Molecular Biology | -- |
| fn | promoter_element | promoter_element(name: String) -> RegulatoryElement | gene_regulation | Molecular Biology | TATA_box, Inr, DPE, CpG_island |
| fn | regulatory_element | regulatory_element(name: String) -> RegulatoryElement | gene_regulation | Molecular Biology | enhancer, silencer, insulator, LCR |
| fn | tf_structural_motif | tf_structural_motif(motif: String) -> TranscriptionFactor | gene_regulation | Molecular Biology | zinc_finger, helix_turn_helix, leucine_zipper, helix_loop_helix, homeodomain, nuclear_hormone_receptor |
| fn | chromatin_remodeler_lookup | chromatin_remodeler_lookup(name: String) -> ChromatinRemodeler | gene_regulation | Molecular Biology | SWI_SNF, ISWI, CHD, INO80 |
| fn | mrna_processing | mrna_processing(event: String) -> RNAProcessingEvent | gene_regulation | Molecular Biology | five_prime_cap, three_prime_poly_A, splicing |
| fn | alternative_splicing | alternative_splicing(variant_type: String) -> SplicingVariant | gene_regulation | Molecular Biology | exon_skipping, intron_retention, alt_five_prime, alt_three_prime |
| fn | mrna_stability | mrna_stability(element: String) -> RNAProcessingEvent | gene_regulation | Molecular Biology | ARE, NMD |
| fn | rnai_component | rnai_component(name: String) -> RNAiComponent | gene_regulation | Molecular Biology | DROSHA, EXPORTIN5, DICER, AGO2, siRNA, piRNA |
| fn | mirna_pathway_step | mirna_pathway_step(step: Int) -> String | gene_regulation | Molecular Biology | -- |
| fn | translational_control | translational_control(name: String) -> TranslationalControl | gene_regulation | Molecular Biology | mTOR_4EBP, IRE_IRP, uORF, IRES |
| fn | signal_dependent_regulation | signal_dependent_regulation(pathway: String) -> SignalRegulation | gene_regulation | Molecular Biology | NF_kB, JAK_STAT, nuclear_hormone, p53 |
| fn | crispr_component | crispr_component(name: String) -> CRISPRComponent | gene_regulation | Molecular Biology | Cas9, sgRNA, PAM, HDR, NHEJ, Cas12a |
| fn | crispr_application | crispr_application(application: String) -> String | gene_regulation | Molecular Biology | gene_knockout, gene_correction, CRISPRa, CRISPRi, base_editing, prime_editing |
| fn | pic_assembly_step | pic_assembly_step(step: Int) -> String | gene_regulation | Molecular Biology | -- |
| fn | is_activator | is_activator(tf_name: String) -> Bool | gene_regulation | Molecular Biology | SP1, JUN, MYC, PAX6, ESR1, CAP |
| fn | is_repressor | is_repressor(tf_name: String) -> Bool | gene_regulation | Molecular Biology | lacI, trpR, REST, MDM2 |
| fn | requires_ligand | requires_ligand(tf_name: String) -> Bool | gene_regulation | Molecular Biology | ESR1, GR, lacI, trpR |
| fn | regulation_level | regulation_level(level: String) -> String | gene_regulation | Molecular Biology | chromatin, transcriptional, post_transcriptional, translational, post_translational, rna_interference |
| fn | noble_laureate_gene_regulation | noble_laureate_gene_regulation(topic: String) -> String | gene_regulation | Molecular Biology | operon, rnai, transcription, crispr, hox, split_genes |
| fn | lac_operon_component_count | lac_operon_component_count() -> Int | gene_regulation | Molecular Biology | -- |
| fn | trp_operon_component_count | trp_operon_component_count() -> Int | gene_regulation | Molecular Biology | -- |
| fn | general_tf_count | general_tf_count() -> Int | gene_regulation | Molecular Biology | -- |
| fn | promoter_element_count | promoter_element_count() -> Int | gene_regulation | Molecular Biology | -- |
| fn | regulatory_element_count | regulatory_element_count() -> Int | gene_regulation | Molecular Biology | -- |
| fn | tf_structural_motif_count | tf_structural_motif_count() -> Int | gene_regulation | Molecular Biology | -- |
| fn | chromatin_remodeler_count | chromatin_remodeler_count() -> Int | gene_regulation | Molecular Biology | -- |
| fn | mrna_processing_event_count | mrna_processing_event_count() -> Int | gene_regulation | Molecular Biology | -- |
| fn | alternative_splicing_type_count | alternative_splicing_type_count() -> Int | gene_regulation | Molecular Biology | -- |
| fn | mrna_stability_element_count | mrna_stability_element_count() -> Int | gene_regulation | Molecular Biology | -- |
| fn | rnai_component_count | rnai_component_count() -> Int | gene_regulation | Molecular Biology | -- |
| fn | mirna_pathway_step_count | mirna_pathway_step_count() -> Int | gene_regulation | Molecular Biology | -- |
| fn | translational_control_count | translational_control_count() -> Int | gene_regulation | Molecular Biology | -- |
| fn | signal_dependent_pathway_count | signal_dependent_pathway_count() -> Int | gene_regulation | Molecular Biology | -- |
| fn | crispr_component_count | crispr_component_count() -> Int | gene_regulation | Molecular Biology | -- |
| fn | crispr_application_count | crispr_application_count() -> Int | gene_regulation | Molecular Biology | -- |
| fn | pic_assembly_step_count | pic_assembly_step_count() -> Int | gene_regulation | Molecular Biology | -- |
| fn | regulation_level_count | regulation_level_count() -> Int | gene_regulation | Molecular Biology | -- |
| fn | noble_prize_gene_regulation_count | noble_prize_gene_regulation_count() -> Int | gene_regulation | Molecular Biology | -- |
| struct | OperonComponent | struct { name: String, gene: String, accession: String, role: String, description: String, citation: String } | gene_regulation | Molecular Biology | -- |
| struct | TranscriptionFactor | struct { name: String, gene: String, accession: String, tf_class: String, dna_motif: String, role: String, description: String, citation: String } | gene_regulation | Molecular Biology | -- |
| struct | RegulatoryElement | struct { name: String, element_type: String, typical_distance: String, mechanism: String, key_protein: String, key_accession: String, description: String, citation: String } | gene_regulation | Molecular Biology | -- |
| struct | ChromatinRemodeler | struct { name: String, complex_family: String, accession: String, gene: String, mechanism: String, atp_dependent: Bool, description: String, citation: String } | gene_regulation | Molecular Biology | -- |
| struct | RNAProcessingEvent | struct { name: String, event_type: String, key_enzyme: String, accession: String, mechanism: String, description: String, citation: String } | gene_regulation | Molecular Biology | -- |
| struct | RNAiComponent | struct { name: String, pathway: String, accession: String, gene: String, role: String, description: String, citation: String } | gene_regulation | Molecular Biology | -- |
| struct | TranslationalControl | struct { name: String, pathway: String, key_protein: String, accession: String, mechanism: String, description: String, citation: String } | gene_regulation | Molecular Biology | -- |
| struct | SignalRegulation | struct { name: String, pathway: String, key_protein: String, accession: String, trigger: String, mechanism: String, target_genes: String, description: String, citation: String } | gene_regulation | Molecular Biology | -- |
| struct | CRISPRComponent | struct { name: String, component_type: String, accession: String, organism: String, role: String, description: String, citation: String } | gene_regulation | Molecular Biology | -- |
| struct | SplicingVariant | struct { name: String, variant_type: String, mechanism: String, example_gene: String, description: String, citation: String } | gene_regulation | Molecular Biology | -- |
| struct | GeneralTF | struct { name: String, accession: String, gene: String, assembly_order: Int, role: String, description: String, citation: String } | gene_regulation | Molecular Biology | -- |
| fn | org | org(n: String, mt: String, pf: String, kp: String, kp1: String, kp1a: String, kp2: String, kp2a: String, kp3: String, kp3a: String, sz: String, dw: String, ci: String) -> Organelle | organelles | Cell Biology | -- |
| fn | lookup_organelle | lookup_organelle(name: String) -> Organelle | organelles | Cell Biology | nucleus, mitochondria, endoplasmic_reticulum_rough, endoplasmic_reticulum_smooth, golgi, lysosome, peroxisome, ribosome, centrosome, cytoskeleton_actin, ... (+6) |
| fn | organelle_count | organelle_count() -> Int | organelles | Cell Biology | -- |
| fn | membrane_bound_organelle_count | membrane_bound_organelle_count() -> Int | organelles | Cell Biology | -- |
| fn | non_membrane_organelle_count | non_membrane_organelle_count() -> Int | organelles | Cell Biology | -- |
| fn | all_organelle_names | all_organelle_names() -> String | organelles | Cell Biology | -- |
| struct | Organelle | struct { name: String, membrane_type: String, primary_function: String, key_processes: String, key_protein_1: String, key_protein_1_accession: String, key_protein_2: String, key_protein_2_accession: String, key_protein_3: String, key_protein_3_accession: String, size: String, disease_when_dysfunctional: String, citation: String } | organelles | Cell Biology | -- |
| fn | cdk_pair | cdk_pair(cy: String, ca: String, cd: String, cda: String, ph: String, sub: String, inh: String, ci: String) -> CyclinCDK | mitosis | Cell Biology | -- |
| fn | checkpoint | checkpoint(n: String, ph: String, pu: String, ks: String, ke: String, en: String, fc: String, ct: String, ci: String) -> Checkpoint | mitosis | Cell Biology | -- |
| fn | mprotein | mprotein(a: String, g: String, n: String, ph: String, r: String, ci: String) -> MitoticProtein | mitosis | Cell Biology | -- |
| fn | failure | failure(cl: String, a: String, co: String, ct: String, ci: String) -> CheckpointFailure | mitosis | Cell Biology | -- |
| fn | lookup_cyclin_cdk | lookup_cyclin_cdk(phase: String) -> CyclinCDK | mitosis | Cell Biology | G1, G1_S, S, G2_M, M |
| fn | lookup_checkpoint | lookup_checkpoint(name: String) -> Checkpoint | mitosis | Cell Biology | G1_S, G2_M, SAC |
| fn | mitotic_protein | mitotic_protein(accession: String) -> MitoticProtein | mitosis | Cell Biology | P06493, O14965, Q96GD4, P53350, P04637, P06400, P38936, P46527, P42771, Q12834, ... (+11) |
| fn | checkpoint_failure | checkpoint_failure(component: String) -> CheckpointFailure | mitosis | Cell Biology | TP53, RB1, CDKN2A, ATM, BRCA1, MAD2, BUB1B, MDM2_amp |
| fn | apc_pathway | apc_pathway(pathway: String) -> String | mitosis | Cell Biology | securin_destruction, cyclin_b_destruction |
| fn | cell_cycle_phase_count | cell_cycle_phase_count() -> Int | mitosis | Cell Biology | -- |
| fn | checkpoint_count | checkpoint_count() -> Int | mitosis | Cell Biology | -- |
| fn | cyclin_cdk_pair_count | cyclin_cdk_pair_count() -> Int | mitosis | Cell Biology | -- |
| fn | tumor_suppressor_count | tumor_suppressor_count() -> Int | mitosis | Cell Biology | -- |
| struct | CyclinCDK | struct { cyclin: String, cyclin_accession: String, cdk: String, cdk_accession: String, phase: String, substrates: String, inhibitors: String, citation: String } | mitosis | Cell Biology | -- |
| struct | Checkpoint | struct { name: String, phase: String, purpose: String, key_sensors: String, key_effectors: String, enforcement: String, failure_consequence: String, cancer_types: String, citation: String } | mitosis | Cell Biology | -- |
| struct | MitoticProtein | struct { accession: String, gene: String, name: String, phase: String, role: String, citation: String } | mitosis | Cell Biology | -- |
| struct | CheckpointFailure | struct { component_lost: String, accession: String, consequence: String, cancer_types: String, citation: String } | mitosis | Cell Biology | -- |
| fn | ion_conc | ion_conc(i: String, ic: Float, ec: Float, u: String, np: Float, nu: String, ci: String) -> IonConcentration | membrane_potential | Cell Biology | -- |
| fn | ap_phase | ap_phase(p: String, vr: String, di: String, ch: String, ca: String, d: String, du: String, ci: String) -> ActionPotentialPhase | membrane_potential | Cell Biology | -- |
| fn | cell_pot | cell_pot(ct: String, rp: Float, u: String, th: Float, pk: Float, ci: String) -> CellPotential | membrane_potential | Cell Biology | -- |
| fn | lookup_ion | lookup_ion(ion: String) -> IonConcentration | membrane_potential | Cell Biology | K, Na, Cl, Ca |
| fn | lookup_ap_phase | lookup_ap_phase(phase: String) -> ActionPotentialPhase | membrane_potential | Cell Biology | resting, depolarization, repolarization, hyperpolarization, refractory_absolute, refractory_relative |
| fn | lookup_resting_potential | lookup_resting_potential(cell_type: String) -> CellPotential | membrane_potential | Cell Biology | neuron, skeletal_muscle, cardiac_muscle, cardiac_pacemaker, smooth_muscle, red_blood_cell, epithelial, astrocyte, beta_cell |
| fn | nernst | nernst(ion_out: Float, ion_in: Float, valence: Int) -> Float | membrane_potential | Cell Biology | -- |
| fn | nernst_potassium | nernst_potassium() -> Float | membrane_potential | Cell Biology | -- |
| fn | nernst_sodium | nernst_sodium() -> Float | membrane_potential | Cell Biology | -- |
| fn | nernst_chloride | nernst_chloride() -> Float | membrane_potential | Cell Biology | -- |
| fn | nernst_calcium | nernst_calcium() -> Float | membrane_potential | Cell Biology | -- |
| fn | na_k_atpase_accession | na_k_atpase_accession() -> String | membrane_potential | Cell Biology | -- |
| fn | na_k_atpase_stoichiometry | na_k_atpase_stoichiometry() -> String | membrane_potential | Cell Biology | -- |
| fn | na_k_atpase_citation | na_k_atpase_citation() -> String | membrane_potential | Cell Biology | -- |
| fn | ap_phase_count | ap_phase_count() -> Int | membrane_potential | Cell Biology | -- |
| fn | cell_type_potential_count | cell_type_potential_count() -> Int | membrane_potential | Cell Biology | -- |
| struct | IonConcentration | struct { ion: String, intracellular: Float, extracellular: Float, unit: String, nernst_potential: Float, nernst_unit: String, citation: String } | membrane_potential | Cell Biology | -- |
| struct | ActionPotentialPhase | struct { phase: String, voltage_range: String, dominant_ion: String, ion_channel: String, ion_channel_accession: String, description: String, duration: String, citation: String } | membrane_potential | Cell Biology | -- |
| struct | CellPotential | struct { cell_type: String, resting_potential: Float, unit: String, threshold: Float, peak: Float, citation: String } | membrane_potential | Cell Biology | -- |
| fn | gstep | gstep(sn: Int, en: String, ea: String, eg: String, su: String, pr: String, at: Int, re: Bool, rg: Bool, rn: String, ci: String) -> GlycolysisStep | glycolysis | Cell Biology | -- |
| fn | istep | istep(sn: Int, co: String, ac: String, ge: String, act: String, ci: String) -> InsulinPathwayStep | glycolysis | Cell Biology | -- |
| fn | glycolysis_step | glycolysis_step(step: Int) -> GlycolysisStep | glycolysis | Cell Biology | -- |
| fn | glycolysis_net_atp | glycolysis_net_atp() -> Int | glycolysis | Cell Biology | -- |
| fn | glycolysis_net_nadh | glycolysis_net_nadh() -> Int | glycolysis | Cell Biology | -- |
| fn | insulin_pathway_step | insulin_pathway_step(step: Int) -> InsulinPathwayStep | glycolysis | Cell Biology | -- |
| fn | insulin_pathway_step_count | insulin_pathway_step_count() -> Int | glycolysis | Cell Biology | -- |
| fn | glycolysis_step_count | glycolysis_step_count() -> Int | glycolysis | Cell Biology | -- |
| fn | pyruvate_fate | pyruvate_fate(condition: String) -> String | glycolysis | Cell Biology | aerobic, anaerobic, fermentation, cancer |
| fn | glucose_transporter | glucose_transporter(name: String) -> String | glycolysis | Cell Biology | GLUT1, GLUT2, GLUT3, GLUT4, GLUT5 |
| struct | GlycolysisStep | struct { step_number: Int, enzyme_name: String, enzyme_accession: String, enzyme_gene: String, substrate: String, product: String, atp_change: Int, reversible: Bool, regulatory: Bool, regulation_note: String, citation: String } | glycolysis | Cell Biology | -- |
| struct | InsulinPathwayStep | struct { step_number: Int, component: String, accession: String, gene: String, action: String, citation: String } | glycolysis | Cell Biology | -- |
| fn | etc | etc(cn: String, n: String, sc: Int, ka: String, kg: String, ed: String, ea: String, pp: Int, inh: String, dl: String, ci: String) -> ETCComplex | mitochondria | Cell Biology | -- |
| fn | lookup_etc_complex | lookup_etc_complex(name: String) -> ETCComplex | mitochondria | Cell Biology | I, II, III, IV, V |
| fn | atp_synthase_mechanism | atp_synthase_mechanism() -> String | mitochondria | Cell Biology | -- |
| fn | atp_per_glucose | atp_per_glucose() -> String | mitochondria | Cell Biology | -- |
| fn | tca_enzyme | tca_enzyme(step: Int) -> String | mitochondria | Cell Biology | -- |
| fn | tca_per_acetyl_coa | tca_per_acetyl_coa() -> String | mitochondria | Cell Biology | -- |
| fn | tca_step_count | tca_step_count() -> Int | mitochondria | Cell Biology | -- |
| fn | etc_complex_count | etc_complex_count() -> Int | mitochondria | Cell Biology | -- |
| fn | uncoupling_protein | uncoupling_protein(name: String) -> String | mitochondria | Cell Biology | UCP1, UCP2, UCP3 |
| struct | ETCComplex | struct { complex_number: String, name: String, subunit_count: Int, key_subunit_accession: String, key_subunit_gene: String, electron_donor: String, electron_acceptor: String, protons_pumped: Int, inhibitor: String, disease_link: String, citation: String } | mitochondria | Cell Biology | -- |
| fn | bcl2 | bcl2(n: String, g: String, a: String, fc: String, bh: String, fd: String, m: String, cr: String, ci: String) -> Bcl2FamilyMember | apoptosis_biology | Cell Biology | -- |
| fn | dreceptor | dreceptor(n: String, al: String, a: String, l: String, la: String, ad: String, ic: String, dd: String, cr: String, ci: String) -> DeathReceptor | apoptosis_biology | Cell Biology | -- |
| fn | caspase | caspase(n: String, g: String, a: String, cc: String, ac: String, sub: String, cs: String, ib: String, cr: String, ci: String) -> Caspase | apoptosis_biology | Cell Biology | -- |
| fn | aevent | aevent(n: String, et: String, kp: String, ka: String, m: String, s: String, dm: String, ci: String) -> ApoptoticEvent | apoptosis_biology | Cell Biology | -- |
| fn | regulator | regulator(n: String, g: String, a: String, rc: String, t: String, m: String, pa: String, cr: String, ci: String) -> ApoptosisRegulator | apoptosis_biology | Cell Biology | -- |
| fn | clinical | clinical(dc: String, dn: String, ad: String, kg: String, ka: String, ts: String, ci: String) -> ClinicalContext | apoptosis_biology | Cell Biology | -- |
| fn | lookup_bcl2 | lookup_bcl2(name: String) -> Bcl2FamilyMember | apoptosis_biology | Cell Biology | Bax, Bak, Bad, Bid, Bim, PUMA, NOXA, Bcl-2, Bcl-xL, Mcl-1 |
| fn | lookup_death_receptor | lookup_death_receptor(name: String) -> DeathReceptor | apoptosis_biology | Cell Biology | Fas, TNFR1, TRAIL-R1, TRAIL-R2 |
| fn | lookup_activation_complex | lookup_activation_complex(name: String) -> ApoptoticEvent | apoptosis_biology | Cell Biology | DISC, apoptosome, MOMP |
| fn | lookup_caspase | lookup_caspase(name: String) -> Caspase | apoptosis_biology | Cell Biology | caspase-2, caspase-8, caspase-9, caspase-10, caspase-3, caspase-6, caspase-7 |
| fn | lookup_apoptotic_event | lookup_apoptotic_event(name: String) -> ApoptoticEvent | apoptosis_biology | Cell Biology | DNA_fragmentation, PS_exposure, membrane_blebbing, apoptotic_bodies, cytochrome_c_release |
| fn | lookup_regulator | lookup_regulator(name: String) -> ApoptosisRegulator | apoptosis_biology | Cell Biology | XIAP, survivin, Smac, Omi, p53, AKT, NF-kB |
| fn | lookup_clinical | lookup_clinical(name: String) -> ClinicalContext | apoptosis_biology | Cell Biology | follicular_lymphoma, p53_cancer, iap_cancer, mcl1_cancer, alps, sle, alzheimer, parkinson, huntington |
| fn | intrinsic_pathway_summary | intrinsic_pathway_summary() -> String | apoptosis_biology | Cell Biology | -- |
| fn | extrinsic_pathway_summary | extrinsic_pathway_summary() -> String | apoptosis_biology | Cell Biology | -- |
| fn | type_I_vs_type_II | type_I_vs_type_II() -> String | apoptosis_biology | Cell Biology | -- |
| fn | apoptosis_vs_necroptosis | apoptosis_vs_necroptosis() -> String | apoptosis_biology | Cell Biology | -- |
| fn | bcl2_family_count | bcl2_family_count() -> Int | apoptosis_biology | Cell Biology | -- |
| fn | death_receptor_count | death_receptor_count() -> Int | apoptosis_biology | Cell Biology | -- |
| fn | caspase_count | caspase_count() -> Int | apoptosis_biology | Cell Biology | -- |
| fn | initiator_caspase_count | initiator_caspase_count() -> Int | apoptosis_biology | Cell Biology | -- |
| fn | executioner_caspase_count | executioner_caspase_count() -> Int | apoptosis_biology | Cell Biology | -- |
| fn | apoptotic_event_count | apoptotic_event_count() -> Int | apoptosis_biology | Cell Biology | -- |
| fn | activation_complex_count | activation_complex_count() -> Int | apoptosis_biology | Cell Biology | -- |
| fn | regulator_count | regulator_count() -> Int | apoptosis_biology | Cell Biology | -- |
| fn | clinical_context_count | clinical_context_count() -> Int | apoptosis_biology | Cell Biology | -- |
| fn | total_protein_entries | total_protein_entries() -> Int | apoptosis_biology | Cell Biology | -- |
| fn | total_unique_accessions | total_unique_accessions() -> String | apoptosis_biology | Cell Biology | -- |
| struct | Bcl2FamilyMember | struct { name: String, gene: String, accession: String, family_class: String, bh_domains: String, function_desc: String, mechanism: String, clinical_relevance: String, citation: String } | apoptosis_biology | Cell Biology | -- |
| struct | DeathReceptor | struct { name: String, alias: String, accession: String, ligand: String, ligand_accession: String, adaptor: String, initiator_caspase: String, death_domain: String, clinical_relevance: String, citation: String } | apoptosis_biology | Cell Biology | -- |
| struct | Caspase | struct { name: String, gene: String, accession: String, caspase_class: String, activation_complex: String, substrates: String, cleavage_specificity: String, inhibited_by: String, clinical_relevance: String, citation: String } | apoptosis_biology | Cell Biology | -- |
| struct | ApoptoticEvent | struct { name: String, event_type: String, key_proteins: String, key_accessions: String, mechanism: String, significance: String, detection_method: String, citation: String } | apoptosis_biology | Cell Biology | -- |
| struct | ApoptosisRegulator | struct { name: String, gene: String, accession: String, regulator_class: String, target: String, mechanism: String, pro_or_anti: String, clinical_relevance: String, citation: String } | apoptosis_biology | Cell Biology | -- |
| struct | ClinicalContext | struct { disease_category: String, disease_name: String, apoptotic_defect: String, key_genes: String, key_accessions: String, therapeutic_strategy: String, citation: String } | apoptosis_biology | Cell Biology | -- |
| fn | fas | fas(sn: Int, en: String, ea: String, eg: String, su: String, pr: String, co: String, re: Bool, rg: Bool, rn: String, ci: String) -> FASynthStep | lipid_metabolism | Metabolism | -- |
| fn | fa_synthesis_step | fa_synthesis_step(step: Int) -> FASynthStep | lipid_metabolism | Metabolism | -- |
| fn | fa_synthesis_nadph_cost | fa_synthesis_nadph_cost() -> Int | lipid_metabolism | Metabolism | -- |
| fn | fa_synthesis_atp_cost | fa_synthesis_atp_cost() -> Int | lipid_metabolism | Metabolism | -- |
| fn | fa_synthesis_acetyl_coa_cost | fa_synthesis_acetyl_coa_cost() -> Int | lipid_metabolism | Metabolism | -- |
| fn | fa_synthesis_step_count | fa_synthesis_step_count() -> Int | lipid_metabolism | Metabolism | -- |
| fn | box_step | box_step(sn: Int, ph: String, en: String, ea: String, eg: String, su: String, pr: String, co: String, ep: String, rn: String, ci: String) -> BetaOxStep | lipid_metabolism | Metabolism | -- |
| fn | beta_oxidation_step | beta_oxidation_step(step: Int) -> BetaOxStep | lipid_metabolism | Metabolism | -- |
| fn | palmitate_oxidation_atp | palmitate_oxidation_atp() -> Int | lipid_metabolism | Metabolism | -- |
| fn | palmitate_beta_ox_cycles | palmitate_beta_ox_cycles() -> Int | lipid_metabolism | Metabolism | -- |
| fn | palmitate_acetyl_coa_yield | palmitate_acetyl_coa_yield() -> Int | lipid_metabolism | Metabolism | -- |
| fn | beta_oxidation_step_count | beta_oxidation_step_count() -> Int | lipid_metabolism | Metabolism | -- |
| fn | kstep | kstep(sn: Int, ph: String, en: String, ea: String, eg: String, su: String, pr: String, ti: String, cn: String, ci: String) -> KetoneStep | lipid_metabolism | Metabolism | -- |
| fn | ketone_step | ketone_step(step: Int) -> KetoneStep | lipid_metabolism | Metabolism | -- |
| fn | ketone_step_count | ketone_step_count() -> Int | lipid_metabolism | Metabolism | -- |
| fn | dka_context | dka_context() -> String | lipid_metabolism | Metabolism | -- |
| fn | ketone_atp_per_acetoacetate | ketone_atp_per_acetoacetate() -> Int | lipid_metabolism | Metabolism | -- |
| fn | ketone_atp_per_bhb | ketone_atp_per_bhb() -> Int | lipid_metabolism | Metabolism | -- |
| fn | chol | chol(sn: Int, en: String, ea: String, eg: String, su: String, pr: String, co: String, rg: Bool, rn: String, cn: String, ci: String) -> CholesterolStep | lipid_metabolism | Metabolism | -- |
| fn | cholesterol_step | cholesterol_step(step: Int) -> CholesterolStep | lipid_metabolism | Metabolism | -- |
| fn | cholesterol_step_count | cholesterol_step_count() -> Int | lipid_metabolism | Metabolism | -- |
| fn | srebp_regulation | srebp_regulation() -> String | lipid_metabolism | Metabolism | -- |
| fn | statin_mechanism | statin_mechanism() -> String | lipid_metabolism | Metabolism | -- |
| fn | lipo | lipo(n: String, dr: String, di: String, pl: String, ka: String, kaa: String, so: String, fn_note: String, re: String, cn: String, ci: String) -> Lipoprotein | lipid_metabolism | Metabolism | -- |
| fn | lookup_lipoprotein | lookup_lipoprotein(name: String) -> Lipoprotein | lipid_metabolism | Metabolism | chylomicron, VLDL, IDL, LDL, HDL |
| fn | lipoprotein_count | lipoprotein_count() -> Int | lipid_metabolism | Metabolism | -- |
| fn | apolipoprotein_info | apolipoprotein_info(name: String) -> String | lipid_metabolism | Metabolism | ApoB-48, ApoB-100, ApoE, ApoA-I, ApoC-II, ApoC-III |
| fn | familial_hypercholesterolemia | familial_hypercholesterolemia() -> String | lipid_metabolism | Metabolism | -- |
| fn | atherosclerosis_pathogenesis | atherosclerosis_pathogenesis() -> String | lipid_metabolism | Metabolism | -- |
| fn | eico | eico(sn: Int, pw: String, en: String, ea: String, eg: String, su: String, pr: String, inh: String, cn: String, ci: String) -> EicosanoidStep | lipid_metabolism | Metabolism | -- |
| fn | eicosanoid_step | eicosanoid_step(step: Int) -> EicosanoidStep | lipid_metabolism | Metabolism | -- |
| fn | eicosanoid_step_count | eicosanoid_step_count() -> Int | lipid_metabolism | Metabolism | -- |
| fn | aspirin_mechanism | aspirin_mechanism() -> String | lipid_metabolism | Metabolism | -- |
| fn | nsaid_comparison | nsaid_comparison(drug: String) -> String | lipid_metabolism | Metabolism | aspirin, ibuprofen, naproxen, celecoxib, indomethacin |
| fn | lipid_module_total_steps | lipid_module_total_steps() -> Int | lipid_metabolism | Metabolism | -- |
| fn | lipid_module_total_enzymes | lipid_module_total_enzymes() -> Int | lipid_metabolism | Metabolism | -- |
| fn | lipid_module_sections | lipid_module_sections() -> Int | lipid_metabolism | Metabolism | -- |
| fn | fed_vs_fasted_summary | fed_vs_fasted_summary() -> String | lipid_metabolism | Metabolism | -- |
| fn | omega3_vs_omega6 | omega3_vs_omega6() -> String | lipid_metabolism | Metabolism | -- |
| fn | pcsk9_mechanism | pcsk9_mechanism() -> String | lipid_metabolism | Metabolism | -- |
| struct | FASynthStep | struct { step_number: Int, enzyme_name: String, enzyme_accession: String, enzyme_gene: String, substrate: String, product: String, cofactor: String, reversible: Bool, regulatory: Bool, regulation_note: String, citation: String } | lipid_metabolism | Metabolism | -- |
| struct | BetaOxStep | struct { step_number: Int, phase: String, enzyme_name: String, enzyme_accession: String, enzyme_gene: String, substrate: String, product: String, cofactor: String, energy_product: String, regulation_note: String, citation: String } | lipid_metabolism | Metabolism | -- |
| struct | KetoneStep | struct { step_number: Int, phase: String, enzyme_name: String, enzyme_accession: String, enzyme_gene: String, substrate: String, product: String, tissue: String, clinical_note: String, citation: String } | lipid_metabolism | Metabolism | -- |
| struct | CholesterolStep | struct { step_number: Int, enzyme_name: String, enzyme_accession: String, enzyme_gene: String, substrate: String, product: String, cofactor: String, regulatory: Bool, regulation_note: String, clinical_note: String, citation: String } | lipid_metabolism | Metabolism | -- |
| struct | Lipoprotein | struct { name: String, density_range: String, diameter_nm: String, primary_lipid: String, key_apolipoprotein: String, apo_accession: String, source: String, function_note: String, receptor: String, clinical_note: String, citation: String } | lipid_metabolism | Metabolism | -- |
| struct | EicosanoidStep | struct { step_number: Int, pathway: String, enzyme_name: String, enzyme_accession: String, enzyme_gene: String, substrate: String, product: String, inhibitor: String, clinical_note: String, citation: String } | lipid_metabolism | Metabolism | -- |
| fn | atrans | atrans(addr: Int, nm: String, ab: String, acc: String, gn: String, cof: String, ad: String, aa: String, pk: String, pa: String, ti: String, cl: String, ci: String) -> Aminotransferase | amino_acid_metabolism | Metabolism | -- |
| fn | ucs | ucs(sn: Int, en: String, ea: String, acc: String, gn: String, loc: String, su: String, pr: String, cof: String, atp: Int, reg: String, def: String, ci: String) -> UreaCycleStep | amino_acid_metabolism | Metabolism | -- |
| fn | aafate | aafate(addr: Int, c1: String, c3: String, nm: String, ess: Bool, glu: Bool, ket: Bool, ep: String, ke: String, ka: String, cn: String, ci: String) -> AminoAcidCatabolicFate | amino_acid_metabolism | Metabolism | -- |
| fn | spath | spath(addr: Int, nm: String, su: String, pr: String, en: String, ea: String, eg: String, cof: String, ti: String, dd: String, cn: String, ci: String) -> SpecializedPathway | amino_acid_metabolism | Metabolism | -- |
| fn | ocarb | ocarb(addr: Int, nm: String, ab: String, rl: String, en: String, ea: String, eg: String, cof: String, cl: String, ci: String) -> OneCarbonComponent | amino_acid_metabolism | Metabolism | -- |
| fn | bcaa | bcaa(addr: Int, aa: String, c1: String, glu: Bool, ket: Bool, bp: String, bk: String, fp: String, ep: String, ci: String) -> BCAAMetabolism | amino_acid_metabolism | Metabolism | -- |
| fn | nbal | nbal(cond: String, bt: String, nio: String, mech: String, cl: String, ci: String) -> NitrogenBalance | amino_acid_metabolism | Metabolism | -- |
| fn | oxdeam | oxdeam(addr: Int, en: String, acc: String, gn: String, su: String, pk: String, pn: String, co: String, dir: String, loc: String, act: String, inh: String, cl: String, ci: String) -> OxidativeDeamination | amino_acid_metabolism | Metabolism | -- |
| fn | lookup_aminotransferase | lookup_aminotransferase(addr: Int) -> Aminotransferase | amino_acid_metabolism | Metabolism | -- |
| fn | plp_cofactor_mechanism | plp_cofactor_mechanism() -> String | amino_acid_metabolism | Metabolism | -- |
| fn | lookup_oxidative_deamination | lookup_oxidative_deamination(addr: Int) -> OxidativeDeamination | amino_acid_metabolism | Metabolism | -- |
| fn | ammonia_toxicity | ammonia_toxicity() -> String | amino_acid_metabolism | Metabolism | -- |
| fn | urea_cycle_step | urea_cycle_step(step: Int) -> UreaCycleStep | amino_acid_metabolism | Metabolism | -- |
| fn | urea_cycle_net_reaction | urea_cycle_net_reaction() -> String | amino_acid_metabolism | Metabolism | -- |
| fn | nag_activation | nag_activation() -> String | amino_acid_metabolism | Metabolism | -- |
| fn | hyperammonemia_causes | hyperammonemia_causes(cause: String) -> String | amino_acid_metabolism | Metabolism | urea_cycle_defect, liver_failure, organic_acidemias, valproate, urease_infection |
| fn | amino_acid_catabolic_fate | amino_acid_catabolic_fate(addr: Int) -> AminoAcidCatabolicFate | amino_acid_metabolism | Metabolism | -- |
| fn | glucogenic_amino_acids | glucogenic_amino_acids() -> String | amino_acid_metabolism | Metabolism | -- |
| fn | ketogenic_amino_acids | ketogenic_amino_acids() -> String | amino_acid_metabolism | Metabolism | -- |
| fn | essential_amino_acids | essential_amino_acids() -> String | amino_acid_metabolism | Metabolism | -- |
| fn | specialized_pathway | specialized_pathway(addr: Int) -> SpecializedPathway | amino_acid_metabolism | Metabolism | -- |
| fn | one_carbon_component | one_carbon_component(addr: Int) -> OneCarbonComponent | amino_acid_metabolism | Metabolism | -- |
| fn | methyl_trap_hypothesis | methyl_trap_hypothesis() -> String | amino_acid_metabolism | Metabolism | -- |
| fn | neural_tube_defect_prevention | neural_tube_defect_prevention() -> String | amino_acid_metabolism | Metabolism | -- |
| fn | clinical_folate_b12 | clinical_folate_b12(condition: String) -> String | amino_acid_metabolism | Metabolism | megaloblastic_anemia, homocysteinemia, subacute_combined_degeneration |
| fn | bcaa_metabolism | bcaa_metabolism(addr: Int) -> BCAAMetabolism | amino_acid_metabolism | Metabolism | -- |
| fn | bcat_info | bcat_info() -> String | amino_acid_metabolism | Metabolism | -- |
| fn | bckdh_info | bckdh_info() -> String | amino_acid_metabolism | Metabolism | -- |
| fn | maple_syrup_urine_disease | maple_syrup_urine_disease() -> String | amino_acid_metabolism | Metabolism | -- |
| fn | nitrogen_balance | nitrogen_balance(condition: String) -> NitrogenBalance | amino_acid_metabolism | Metabolism | equilibrium, positive_growth, positive_pregnancy, positive_recovery, negative_starvation, negative_trauma, negative_sepsis, negative_cancer |
| fn | protein_turnover_rate | protein_turnover_rate() -> String | amino_acid_metabolism | Metabolism | -- |
| fn | protein_quality | protein_quality(source: String) -> String | amino_acid_metabolism | Metabolism | complete, incomplete, limiting_amino_acid |
| fn | aminotransferase_count | aminotransferase_count() -> Int | amino_acid_metabolism | Metabolism | -- |
| fn | urea_cycle_step_count | urea_cycle_step_count() -> Int | amino_acid_metabolism | Metabolism | -- |
| fn | oxidative_deamination_count | oxidative_deamination_count() -> Int | amino_acid_metabolism | Metabolism | -- |
| fn | amino_acid_catabolic_fate_count | amino_acid_catabolic_fate_count() -> Int | amino_acid_metabolism | Metabolism | -- |
| fn | specialized_pathway_count | specialized_pathway_count() -> Int | amino_acid_metabolism | Metabolism | -- |
| fn | one_carbon_component_count | one_carbon_component_count() -> Int | amino_acid_metabolism | Metabolism | -- |
| fn | bcaa_count | bcaa_count() -> Int | amino_acid_metabolism | Metabolism | -- |
| fn | nitrogen_balance_condition_count | nitrogen_balance_condition_count() -> Int | amino_acid_metabolism | Metabolism | -- |
| struct | Aminotransferase | struct { address: Int, name: String, abbreviation: String, accession: String, gene: String, cofactor: String, amino_donor: String, amino_acceptor: String, product_keto_acid: String, product_amino_acid: String, tissue: String, clinical: String, citation: String } | amino_acid_metabolism | Metabolism | -- |
| struct | UreaCycleStep | struct { step_number: Int, enzyme_name: String, enzyme_abbreviation: String, accession: String, gene: String, location: String, substrate: String, product: String, cofactor: String, atp_cost: Int, regulation: String, deficiency: String, citation: String } | amino_acid_metabolism | Metabolism | -- |
| struct | AminoAcidCatabolicFate | struct { address: Int, code1: String, code3: String, name: String, essential: Bool, glucogenic: Bool, ketogenic: Bool, entry_point: String, key_enzyme: String, key_enzyme_accession: String, clinical_note: String, citation: String } | amino_acid_metabolism | Metabolism | -- |
| struct | SpecializedPathway | struct { address: Int, name: String, substrate: String, product: String, enzyme_name: String, enzyme_accession: String, enzyme_gene: String, cofactor: String, tissue: String, deficiency_disease: String, clinical_note: String, citation: String } | amino_acid_metabolism | Metabolism | -- |
| struct | OneCarbonComponent | struct { address: Int, name: String, abbreviation: String, role: String, enzyme_name: String, enzyme_accession: String, enzyme_gene: String, cofactor: String, clinical: String, citation: String } | amino_acid_metabolism | Metabolism | -- |
| struct | BCAAMetabolism | struct { address: Int, amino_acid: String, code1: String, glucogenic: Bool, ketogenic: Bool, bcat_product: String, bckdh_product: String, final_product: String, entry_point: String, citation: String } | amino_acid_metabolism | Metabolism | -- |
| struct | NitrogenBalance | struct { condition: String, balance_type: String, n_intake_vs_output: String, mechanism: String, clinical: String, citation: String } | amino_acid_metabolism | Metabolism | -- |
| struct | OxidativeDeamination | struct { address: Int, enzyme_name: String, accession: String, gene: String, substrate: String, product_keto: String, product_nitrogen: String, coenzyme: String, direction: String, location: String, activators: String, inhibitors: String, clinical: String, citation: String } | amino_acid_metabolism | Metabolism | -- |
| fn | pstruct | pstruct(n: String, d: String, c: String, e: Bool, kp: String, kpa: String, gp: Bool, gn: Bool, ci: String) -> ProkaryoteStructure | prokaryotes | Microbiology | -- |
| fn | gramresult | gramresult(cl: String, co: String, wt: String, om: Bool, lp: Bool, ta: Bool, pp: Bool, ex: String, ci: String) -> GramStainResult | prokaryotes | Microbiology | -- |
| fn | bfstep | bfstep(sn: Int, pn: String, me: String, kp: String, kpa: String, ci: String) -> BinaryFissionStep | prokaryotes | Microbiology | -- |
| fn | clinbact | clinbact(n: String, g: String, m: String, o: String, v: String, d: String, t: String, ci: String) -> ClinicalBacterium | prokaryotes | Microbiology | -- |
| fn | bmotility | bmotility(mt: String, si: String, me: String, es: String, kp: String, ci: String) -> BacterialMotility | prokaryotes | Microbiology | -- |
| fn | prokaryote_structure | prokaryote_structure(name: String) -> ProkaryoteStructure | prokaryotes | Microbiology | cell_wall, outer_membrane, lps, teichoic_acid, capsule, flagellum, pilus, cytoplasmic_membrane, ribosome, nucleoid, ... (+3) |
| fn | gram_stain | gram_stain(gram_type: String) -> GramStainResult | prokaryotes | Microbiology | positive, negative, acid_fast, atypical |
| fn | gram_stain_step | gram_stain_step(step: Int) -> String | prokaryotes | Microbiology | -- |
| fn | binary_fission_step | binary_fission_step(step: Int) -> BinaryFissionStep | prokaryotes | Microbiology | -- |
| fn | clinical_bacterium | clinical_bacterium(name: String) -> ClinicalBacterium | prokaryotes | Microbiology | staph_aureus, strep_pneumo, ecoli, pseudomonas, mtb, clostridium_diff, neisseria_mening, helicobacter |
| fn | bacterial_motility | bacterial_motility(motility_type: String) -> BacterialMotility | prokaryotes | Microbiology | swimming, twitching, gliding, swarming |
| fn | horizontal_gene_transfer | horizontal_gene_transfer(method: String) -> String | prokaryotes | Microbiology | conjugation, transformation, transduction |
| fn | antibiotic_target | antibiotic_target(target_site: String) -> String | prokaryotes | Microbiology | cell_wall, protein_synthesis_30S, protein_synthesis_50S, dna_replication, rna_synthesis, folate_synthesis, cell_membrane |
| fn | oxygen_requirement | oxygen_requirement(category: String) -> String | prokaryotes | Microbiology | obligate_aerobe, obligate_anaerobe, facultative_anaerobe, microaerophile, aerotolerant_anaerobe |
| fn | prokaryote_structure_count | prokaryote_structure_count() -> Int | prokaryotes | Microbiology | -- |
| fn | gram_stain_type_count | gram_stain_type_count() -> Int | prokaryotes | Microbiology | -- |
| fn | binary_fission_step_count | binary_fission_step_count() -> Int | prokaryotes | Microbiology | -- |
| fn | clinical_bacterium_count | clinical_bacterium_count() -> Int | prokaryotes | Microbiology | -- |
| fn | bacterial_motility_type_count | bacterial_motility_type_count() -> Int | prokaryotes | Microbiology | -- |
| fn | hgt_method_count | hgt_method_count() -> Int | prokaryotes | Microbiology | -- |
| fn | antibiotic_target_count | antibiotic_target_count() -> Int | prokaryotes | Microbiology | -- |
| fn | ecoli_genome_size | ecoli_genome_size() -> Int | prokaryotes | Microbiology | -- |
| fn | ecoli_generation_time_minutes | ecoli_generation_time_minutes() -> Int | prokaryotes | Microbiology | -- |
| struct | ProkaryoteStructure | struct { name: String, description: String, composition: String, essential: Bool, key_protein: String, key_protein_accession: String, gram_positive: Bool, gram_negative: Bool, citation: String } | prokaryotes | Microbiology | -- |
| struct | GramStainResult | struct { classification: String, color: String, wall_thickness: String, outer_membrane: Bool, lps: Bool, teichoic_acid: Bool, periplasm: Bool, examples: String, citation: String } | prokaryotes | Microbiology | -- |
| struct | BinaryFissionStep | struct { step_number: Int, phase_name: String, mechanism: String, key_protein: String, key_protein_accession: String, citation: String } | prokaryotes | Microbiology | -- |
| struct | ClinicalBacterium | struct { name: String, gram: String, morphology: String, oxygen_requirement: String, virulence_factors: String, diseases: String, treatment: String, citation: String } | prokaryotes | Microbiology | -- |
| struct | BacterialMotility | struct { motility_type: String, structure_involved: String, mechanism: String, energy_source: String, key_protein: String, citation: String } | prokaryotes | Microbiology | -- |
| fn | vprot | vprot(n: String, g: String, gb: String, f: String, dt: Bool, dn: String, ci: String) -> ViralProtein | sars_cov2 | Microbiology | -- |
| fn | infstep | infstep(sn: Int, ph: String, vc: String, hc: String, ha: String, me: String, di: String, ci: String) -> InfectionStep | sars_cov2 | Microbiology | -- |
| fn | htarget | htarget(n: String, a: String, g: String, r: String, ts: String, ci: String) -> HostTarget | sars_cov2 | Microbiology | -- |
| fn | viral_protein | viral_protein(name: String) -> ViralProtein | sars_cov2 | Microbiology | spike, RdRp, Mpro, PLpro, nucleocapsid, envelope, membrane, nsp13 |
| fn | infection_step | infection_step(step: Int) -> InfectionStep | sars_cov2 | Microbiology | -- |
| fn | host_target | host_target(name: String) -> HostTarget | sars_cov2 | Microbiology | ACE2, TMPRSS2, NRP1, CD147, FURIN |
| fn | variant_info | variant_info(name: String) -> String | sars_cov2 | Microbiology | Alpha, Beta, Delta, Omicron |
| fn | infection_step_count | infection_step_count() -> Int | sars_cov2 | Microbiology | -- |
| fn | viral_protein_count | viral_protein_count() -> Int | sars_cov2 | Microbiology | -- |
| fn | sars_cov2_genome_size | sars_cov2_genome_size() -> Int | sars_cov2 | Microbiology | -- |
| fn | sars_cov2_citation | sars_cov2_citation() -> String | sars_cov2 | Microbiology | -- |
| struct | ViralProtein | struct { name: String, gene: String, genbank: String, function_desc: String, drug_target: Bool, drug_name: String, citation: String } | sars_cov2 | Microbiology | -- |
| struct | InfectionStep | struct { step_number: Int, phase: String, viral_component: String, host_component: String, host_accession: String, mechanism: String, drug_intervention: String, citation: String } | sars_cov2 | Microbiology | -- |
| struct | HostTarget | struct { name: String, accession: String, gene: String, role_in_infection: String, therapeutic_strategy: String, citation: String } | sars_cov2 | Microbiology | -- |
| fn | pcrstep | pcrstep(sn: Int, n: String, t: Float, d: String, m: String, ke: String, ea: String, ci: String) -> PCRStep | pcr | Microbiology | -- |
| fn | pcrvar | pcrvar(n: String, ab: String, it: String, kd: String, cu: String, dm: String, ci: String) -> PCRVariant | pcr | Microbiology | -- |
| fn | prule | prule(rn: String, d: String, ov: String, ci: String) -> PrimerRule | pcr | Microbiology | -- |
| fn | pcr_step | pcr_step(step: Int) -> PCRStep | pcr | Microbiology | -- |
| fn | pcr_amplification | pcr_amplification(cycles: Int) -> String | pcr | Microbiology | -- |
| fn | pcr_variant | pcr_variant(name: String) -> PCRVariant | pcr | Microbiology | standard, rt_pcr, qpcr, ddpcr, multiplex, lamp |
| fn | covid_pcr_target | covid_pcr_target(target: String) -> String | pcr | Microbiology | E_gene, RdRp, N_gene, S_gene, ORF1ab |
| fn | covid_ct_interpretation | covid_ct_interpretation(ct: Float) -> String | pcr | Microbiology | -- |
| fn | primer_rule | primer_rule(rule: String) -> PrimerRule | pcr | Microbiology | length, tm, gc_content, gc_clamp, no_dimers, no_hairpin, product_size |
| fn | pcr_step_count | pcr_step_count() -> Int | pcr | Microbiology | -- |
| fn | pcr_variant_count | pcr_variant_count() -> Int | pcr | Microbiology | -- |
| fn | primer_rule_count | primer_rule_count() -> Int | pcr | Microbiology | -- |
| fn | taq_optimal_temp | taq_optimal_temp() -> Float | pcr | Microbiology | -- |
| fn | typical_pcr_cycles | typical_pcr_cycles() -> Int | pcr | Microbiology | -- |
| struct | PCRStep | struct { step_number: Int, name: String, temperature: Float, duration: String, mechanism: String, key_enzyme: String, enzyme_accession: String, citation: String } | pcr | Microbiology | -- |
| struct | PCRVariant | struct { name: String, abbreviation: String, input_template: String, key_difference: String, clinical_use: String, detection_method: String, citation: String } | pcr | Microbiology | -- |
| struct | PrimerRule | struct { rule_name: String, description: String, optimal_value: String, citation: String } | pcr | Microbiology | -- |
| fn | vr | vr(addr: Int, nm: String, abbr: String, fam: String, subfam: String, gen: String, gt: String, gs: Float, bc: Int, env: Bool, cap: String, trop: String, rep: String, trans: String, imin: Int, imax: Int, dis: String, diag: String, tx: String, vax: Bool, bsl: Int, notif: Bool, cite: String) -> Virus | virology | Microbiology | -- |
| fn | av | av(nm: String, dc: String, mech: String, tgt: String, spec: String, rt: String, fda: Bool, cite: String) -> Antiviral | virology | Microbiology | -- |
| fn | rstep | rstep(sn: Int, ph: String, desc: String) -> ReplicationStep | virology | Microbiology | -- |
| fn | bclass | bclass(cn: Int, gd: String, rs: String, ex: String) -> BaltimoreClass | virology | Microbiology | -- |
| fn | unknown_virus | unknown_virus() -> Virus | virology | Microbiology | -- |
| fn | unknown_antiviral | unknown_antiviral() -> Antiviral | virology | Microbiology | -- |
| fn | virus_hsv1 | virus_hsv1() -> Virus | virology | Microbiology | -- |
| fn | virus_hsv2 | virus_hsv2() -> Virus | virology | Microbiology | -- |
| fn | virus_vzv | virus_vzv() -> Virus | virology | Microbiology | -- |
| fn | virus_ebv | virus_ebv() -> Virus | virology | Microbiology | -- |
| fn | virus_cmv | virus_cmv() -> Virus | virology | Microbiology | -- |
| fn | virus_hhv6 | virus_hhv6() -> Virus | virology | Microbiology | -- |
| fn | virus_hhv7 | virus_hhv7() -> Virus | virology | Microbiology | -- |
| fn | virus_hhv8 | virus_hhv8() -> Virus | virology | Microbiology | -- |
| fn | virus_hpv16 | virus_hpv16() -> Virus | virology | Microbiology | -- |
| fn | virus_hpv18 | virus_hpv18() -> Virus | virology | Microbiology | -- |
| fn | virus_hpv6_11 | virus_hpv6_11() -> Virus | virology | Microbiology | -- |
| fn | virus_adenovirus | virus_adenovirus() -> Virus | virology | Microbiology | -- |
| fn | virus_hbv | virus_hbv() -> Virus | virology | Microbiology | -- |
| fn | virus_variola | virus_variola() -> Virus | virology | Microbiology | -- |
| fn | virus_mpox | virus_mpox() -> Virus | virology | Microbiology | -- |
| fn | virus_parvob19 | virus_parvob19() -> Virus | virology | Microbiology | -- |
| fn | virus_jcv | virus_jcv() -> Virus | virology | Microbiology | -- |
| fn | virus_influenza_a | virus_influenza_a() -> Virus | virology | Microbiology | -- |
| fn | virus_influenza_b | virus_influenza_b() -> Virus | virology | Microbiology | -- |
| fn | virus_measles | virus_measles() -> Virus | virology | Microbiology | -- |
| fn | virus_rsv | virus_rsv() -> Virus | virology | Microbiology | -- |
| fn | virus_hcv | virus_hcv() -> Virus | virology | Microbiology | -- |
| fn | virus_dengue | virus_dengue() -> Virus | virology | Microbiology | -- |
| fn | virus_zika | virus_zika() -> Virus | virology | Microbiology | -- |
| fn | virus_hiv1 | virus_hiv1() -> Virus | virology | Microbiology | -- |
| fn | virus_ebola | virus_ebola() -> Virus | virology | Microbiology | -- |
| fn | virus_rhinovirus | virus_rhinovirus() -> Virus | virology | Microbiology | -- |
| fn | virus_poliovirus | virus_poliovirus() -> Virus | virology | Microbiology | -- |
| fn | virus_hav | virus_hav() -> Virus | virology | Microbiology | -- |
| fn | virus_norovirus | virus_norovirus() -> Virus | virology | Microbiology | -- |
| fn | virus_rotavirus | virus_rotavirus() -> Virus | virology | Microbiology | -- |
| fn | virus_rabies | virus_rabies() -> Virus | virology | Microbiology | -- |
| fn | virus_b19 | virus_b19() -> Virus | virology | Microbiology | -- |
| fn | virus_jcv | virus_jcv() -> Virus | virology | Microbiology | -- |
| fn | virus_bkv | virus_bkv() -> Virus | virology | Microbiology | -- |
| fn | virus_influenza_a | virus_influenza_a() -> Virus | virology | Microbiology | -- |
| fn | virus_influenza_b | virus_influenza_b() -> Virus | virology | Microbiology | -- |
| fn | virus_influenza_c | virus_influenza_c() -> Virus | virology | Microbiology | -- |
| fn | virus_measles | virus_measles() -> Virus | virology | Microbiology | -- |
| fn | virus_mumps | virus_mumps() -> Virus | virology | Microbiology | -- |
| fn | virus_rsv | virus_rsv() -> Virus | virology | Microbiology | -- |
| fn | virus_parainfluenza | virus_parainfluenza() -> Virus | virology | Microbiology | -- |
| fn | virus_nipah | virus_nipah() -> Virus | virology | Microbiology | -- |
| fn | virus_hendra | virus_hendra() -> Virus | virology | Microbiology | -- |
| fn | virus_dengue | virus_dengue() -> Virus | virology | Microbiology | -- |
| fn | virus_zika | virus_zika() -> Virus | virology | Microbiology | -- |
| fn | virus_wnv | virus_wnv() -> Virus | virology | Microbiology | -- |
| fn | virus_yellow_fever | virus_yellow_fever() -> Virus | virology | Microbiology | -- |
| fn | virus_hcv | virus_hcv() -> Virus | virology | Microbiology | -- |
| fn | virus_chikungunya | virus_chikungunya() -> Virus | virology | Microbiology | -- |
| fn | virus_rubella | virus_rubella() -> Virus | virology | Microbiology | -- |
| fn | virus_hiv1 | virus_hiv1() -> Virus | virology | Microbiology | -- |
| fn | virus_hiv2 | virus_hiv2() -> Virus | virology | Microbiology | -- |
| fn | virus_htlv1 | virus_htlv1() -> Virus | virology | Microbiology | -- |
| fn | virus_ebola | virus_ebola() -> Virus | virology | Microbiology | -- |
| fn | virus_marburg | virus_marburg() -> Virus | virology | Microbiology | -- |
| fn | virus_sars_cov2 | virus_sars_cov2() -> Virus | virology | Microbiology | -- |
| fn | virus_sars_cov | virus_sars_cov() -> Virus | virology | Microbiology | -- |
| fn | virus_mers | virus_mers() -> Virus | virology | Microbiology | -- |
| fn | virus_rabies | virus_rabies() -> Virus | virology | Microbiology | -- |
| fn | virus_poliovirus | virus_poliovirus() -> Virus | virology | Microbiology | -- |
| fn | virus_rhinovirus | virus_rhinovirus() -> Virus | virology | Microbiology | -- |
| fn | virus_hav | virus_hav() -> Virus | virology | Microbiology | -- |
| fn | virus_evd68 | virus_evd68() -> Virus | virology | Microbiology | -- |
| fn | virus_coxsackie | virus_coxsackie() -> Virus | virology | Microbiology | -- |
| fn | virus_norovirus | virus_norovirus() -> Virus | virology | Microbiology | -- |
| fn | virus_rotavirus | virus_rotavirus() -> Virus | virology | Microbiology | -- |
| fn | virus_hantavirus | virus_hantavirus() -> Virus | virology | Microbiology | -- |
| fn | virus_cchf | virus_cchf() -> Virus | virology | Microbiology | -- |
| fn | virus_lassa | virus_lassa() -> Virus | virology | Microbiology | -- |
| fn | virus_lcmv | virus_lcmv() -> Virus | virology | Microbiology | -- |
| fn | lookup_virus | lookup_virus(addr: Int) -> Virus | virology | Microbiology | -- |
| fn | virus_count | virus_count() -> Int | virology | Microbiology | -- |
| fn | lookup_virus_by_name | lookup_virus_by_name(abbr: String) -> Virus | virology | Microbiology | HSV-1, HSV-2, VZV, EBV, CMV, HHV-6, HHV-7, HHV-8, KSHV, HPV-16, ... (+83) |
| fn | lytic_cycle_steps | lytic_cycle_steps(step: Int) -> ReplicationStep | virology | Microbiology | -- |
| fn | lytic_cycle_step_count | lytic_cycle_step_count() -> Int | virology | Microbiology | -- |
| fn | lysogenic_cycle_steps | lysogenic_cycle_steps(step: Int) -> ReplicationStep | virology | Microbiology | -- |
| fn | lysogenic_cycle_step_count | lysogenic_cycle_step_count() -> Int | virology | Microbiology | -- |
| fn | budding_steps | budding_steps(step: Int) -> ReplicationStep | virology | Microbiology | -- |
| fn | budding_step_count | budding_step_count() -> Int | virology | Microbiology | -- |
| fn | baltimore_class | baltimore_class(class_num: Int) -> BaltimoreClass | virology | Microbiology | -- |
| fn | baltimore_class_count | baltimore_class_count() -> Int | virology | Microbiology | -- |
| fn | antiviral | antiviral(drug_name: String) -> Antiviral | virology | Microbiology | acyclovir, valacyclovir, ganciclovir, foscarnet, cidofovir, sofosbuvir, ledipasvir, tenofovir, dolutegravir, bictegravir, ... (+12) |
| fn | family_summary | family_summary(family_name: String) -> String | virology | Microbiology | Herpesviridae, Papillomaviridae, Adenoviridae, Hepadnaviridae, Poxviridae, Parvoviridae, Polyomaviridae, Orthomyxoviridae, Paramyxoviridae, Flaviviridae, ... (+9) |
| fn | is_enveloped | is_enveloped(addr: Int) -> Bool | virology | Microbiology | -- |
| fn | is_dna_virus | is_dna_virus(addr: Int) -> Bool | virology | Microbiology | -- |
| fn | is_rna_virus | is_rna_virus(addr: Int) -> Bool | virology | Microbiology | -- |
| fn | is_oncogenic | is_oncogenic(addr: Int) -> Bool | virology | Microbiology | -- |
| fn | is_arthropod_borne | is_arthropod_borne(addr: Int) -> Bool | virology | Microbiology | -- |
| fn | is_bsl4 | is_bsl4(addr: Int) -> Bool | virology | Microbiology | -- |
| fn | requires_viral_kinase | requires_viral_kinase(drug: String) -> Bool | virology | Microbiology | acyclovir, valacyclovir, famciclovir, ganciclovir |
| fn | is_vaccine_preventable | is_vaccine_preventable(addr: Int) -> Bool | virology | Microbiology | -- |
| fn | dna_virus_count | dna_virus_count() -> Int | virology | Microbiology | -- |
| fn | rna_virus_count | rna_virus_count() -> Int | virology | Microbiology | -- |
| fn | oncogenic_virus_list | oncogenic_virus_list() -> String | virology | Microbiology | -- |
| fn | torch_infections | torch_infections() -> String | virology | Microbiology | -- |
| fn | vaccine_schedule_childhood | vaccine_schedule_childhood() -> String | virology | Microbiology | -- |
| fn | antiviral_drug_count | antiviral_drug_count() -> Int | virology | Microbiology | -- |
| fn | citation_fields_virology | citation_fields_virology() -> String | virology | Microbiology | -- |
| fn | citation_murray_microbiology | citation_murray_microbiology() -> String | virology | Microbiology | -- |
| struct | Virus | struct { address: Int, name: String, abbreviation: String, family: String, subfamily: String, genus: String, genome_type: String, genome_size_kb: Float, baltimore_class: Int, envelope: Bool, capsid_symmetry: String, tropism: String, replication_site: String, transmission: String, incubation_days_min: Int, incubation_days_max: Int, diseases: String, diagnostics: String, treatment: String, vaccine_available: Bool, bsl_level: Int, notifiable: Bool, citation: String } | virology | Microbiology | -- |
| struct | Antiviral | struct { name: String, drug_class: String, mechanism: String, molecular_target: String, spectrum: String, route: String, fda_approved: Bool, citation: String } | virology | Microbiology | -- |
| struct | ReplicationStep | struct { step_number: Int, phase: String, description: String } | virology | Microbiology | -- |
| struct | BaltimoreClass | struct { class_number: Int, genome_description: String, replication_strategy: String, examples: String } | virology | Microbiology | -- |
| fn | btest | btest(tn: String, pr: String, rg: String, pos: String, neg: String, op: String, on: String, ci: String) -> BiochemTest | microbiology_testing | Microbiology | -- |
| fn | cmedia | cmedia(mn: String, mt: String, co: String, sf: String, ih: String, ap: String, ci: String) -> CultureMedium | microbiology_testing | Microbiology | -- |
| fn | gcond | gcond(org: String, temp: Float, atm: String, ttg: String, sr: String, ci: String) -> GrowthCondition | microbiology_testing | Microbiology | -- |
| fn | smethod | smethod(mn: String, st: String, steps: String, pa: String, na: String, cu: String, ci: String) -> StainingMethod | microbiology_testing | Microbiology | -- |
| fn | abp | abp(org: String, drug: String, s: Float, i: Float, r: Float, unit: String, tm: String, ci: String) -> AntibioticBreakpoint | microbiology_testing | Microbiology | -- |
| fn | unknown_biochem_test | unknown_biochem_test() -> BiochemTest | microbiology_testing | Microbiology | -- |
| fn | unknown_culture_medium | unknown_culture_medium() -> CultureMedium | microbiology_testing | Microbiology | -- |
| fn | biochem_test | biochem_test(name: String) -> BiochemTest | microbiology_testing | Microbiology | catalase, coagulase, oxidase, urease, indole, citrate, TSI, bile_esculin, optochin, bacitracin, ... (+11) |
| fn | media | media(name: String) -> CultureMedium | microbiology_testing | Microbiology | blood_agar, MacConkey, chocolate_agar, Thayer_Martin, EMB, mannitol_salt, Hektoen_enteric, Sabouraud, Lowenstein_Jensen, TCBS |
| fn | growth_conditions | growth_conditions(organism: String) -> GrowthCondition | microbiology_testing | Microbiology | E_coli, S_aureus, S_pneumoniae, N_gonorrhoeae, N_meningitidis, H_influenzae, C_jejuni, H_pylori, M_tuberculosis, Pseudomonas, ... (+8) |
| fn | staining_method | staining_method(name: String) -> StainingMethod | microbiology_testing | Microbiology | Gram, acid_fast, India_ink, Giemsa, silver, PAS, Wright |
| fn | antibiotic_breakpoint | antibiotic_breakpoint(organism: String, drug: String) -> AntibioticBreakpoint | microbiology_testing | Microbiology | S_aureus, oxacillin, vancomycin, Enterococcus, vancomycin, ampicillin, E_coli, ciprofloxacin, ceftriaxone, TMP-SMX, ... (+7) |
| fn | identify_gram_positive_coccus | identify_gram_positive_coccus(catalase_pos: Bool, coagulase_pos: Bool, optochin_sens: Bool, bacitracin_sens: Bool, bile_esculin_pos: Bool, pyr_pos: Bool) -> String | microbiology_testing | Microbiology | -- |
| fn | identify_gram_negative_rod | identify_gram_negative_rod(oxidase_pos: Bool, lactose_ferm: Bool, indole_pos: Bool, h2s_pos: Bool, motile: Bool, urease_pos: Bool) -> String | microbiology_testing | Microbiology | -- |
| fn | biochem_test_count | biochem_test_count() -> Int | microbiology_testing | Microbiology | -- |
| fn | culture_media_count | culture_media_count() -> Int | microbiology_testing | Microbiology | -- |
| fn | staining_method_count | staining_method_count() -> Int | microbiology_testing | Microbiology | -- |
| fn | breakpoint_organism_count | breakpoint_organism_count() -> Int | microbiology_testing | Microbiology | -- |
| fn | growth_condition_count | growth_condition_count() -> Int | microbiology_testing | Microbiology | -- |
| fn | hemolysis_type | hemolysis_type(pattern: String) -> String | microbiology_testing | Microbiology | alpha, beta, gamma |
| fn | imvic_pattern | imvic_pattern(organism: String) -> String | microbiology_testing | Microbiology | E_coli, Klebsiella, Enterobacter, Citrobacter, Salmonella, Shigella |
| fn | x_and_v_factor_requirement | x_and_v_factor_requirement(organism: String) -> String | microbiology_testing | Microbiology | H_influenzae, H_parainfluenzae, H_ducreyi |
| fn | mrsa_detection_method | mrsa_detection_method() -> String | microbiology_testing | Microbiology | -- |
| fn | esbl_detection_method | esbl_detection_method() -> String | microbiology_testing | Microbiology | -- |
| fn | vre_detection_method | vre_detection_method() -> String | microbiology_testing | Microbiology | -- |
| struct | BiochemTest | struct { test_name: String, principle: String, reagent: String, positive_result: String, negative_result: String, organisms_positive: String, organisms_negative: String, citation: String } | microbiology_testing | Microbiology | -- |
| struct | CultureMedium | struct { media_name: String, media_type: String, composition: String, selects_for: String, inhibits: String, appearance_positive: String, citation: String } | microbiology_testing | Microbiology | -- |
| struct | GrowthCondition | struct { organism: String, temperature_c: Float, atmosphere: String, time_to_growth: String, special_requirements: String, citation: String } | microbiology_testing | Microbiology | -- |
| struct | StainingMethod | struct { method_name: String, stain_type: String, steps: String, positive_appearance: String, negative_appearance: String, clinical_use: String, citation: String } | microbiology_testing | Microbiology | -- |
| struct | AntibioticBreakpoint | struct { organism: String, drug: String, susceptible_mic: Float, intermediate_mic: Float, resistant_mic: Float, mic_unit: String, test_method: String, citation: String } | microbiology_testing | Microbiology | -- |
| fn | icell | icell(n: String, li: String, sm: String, kp: String, kpa: String, fd: String, lo: String, ls: String, cl: String, ci: String) -> InnateCell | immune_system | Immunology | -- |
| fn | acell | acell(n: String, su: String, sm: String, kc: String, kp: String, kpa: String, fd: String, ds: String, cl: String, ci: String) -> AdaptiveCell | immune_system | Immunology | -- |
| fn | abclass | abclass(cn: String, hc: String, st: String, mw: Float, hl: Float, sc: Float, fd: String, pt: Bool, ca: Bool, cl: String, ci: String) -> Antibody | immune_system | Immunology | -- |
| fn | mhc | mhc(n: String, mc: Int, gl: String, ex: String, pl: String, fd: String, kpa: String, da: String, cl: String, ci: String) -> MhcMolecule | immune_system | Immunology | -- |
| fn | comp | comp(n: String, pw: String, fd: String, kpa: String, dd: String, ci: String) -> ComplementComponent | immune_system | Immunology | -- |
| fn | cyto | cyto(n: String, ps: String, tc: String, fd: String, kpa: String, cr: String, ci: String) -> Cytokine | immune_system | Immunology | -- |
| fn | prr | prr(n: String, rf: String, li: String, sp: String, kpa: String, cl: String, fd: String, ci: String) -> PatternReceptor | immune_system | Immunology | -- |
| fn | innate_cell | innate_cell(name: String) -> InnateCell | immune_system | Immunology | neutrophil, macrophage, dendritic_cell, nk_cell, mast_cell, eosinophil, basophil |
| fn | adaptive_cell | adaptive_cell(name: String) -> AdaptiveCell | immune_system | Immunology | th1, th2, th17, treg, cd8_cytotoxic, b_cell_naive, plasma_cell, memory_b_cell |
| fn | antibody_class | antibody_class(name: String) -> Antibody | immune_system | Immunology | IgG, IgA, IgM, IgE, IgD |
| fn | mhc_molecule | mhc_molecule(name: String) -> MhcMolecule | immune_system | Immunology | HLA-A, HLA-B, HLA-C, HLA-DR, HLA-DP, HLA-DQ |
| fn | complement_component | complement_component(name: String) -> ComplementComponent | immune_system | Immunology | C1q, C4, C3, factor_B, factor_D, properdin, MBL, C5, MAC, C1_inhibitor, ... (+2) |
| fn | cytokine | cytokine(name: String) -> Cytokine | immune_system | Immunology | IL-1, IL-2, IL-4, IL-6, IL-10, IL-12, IL-17, TNF-alpha, IFN-gamma, IFN-alpha, ... (+1) |
| fn | pattern_receptor | pattern_receptor(name: String) -> PatternReceptor | immune_system | Immunology | TLR1, TLR2, TLR3, TLR4, TLR5, TLR7, TLR8, TLR9, NOD1, NOD2, ... (+2) |
| fn | innate_cell_count | innate_cell_count() -> Int | immune_system | Immunology | -- |
| fn | adaptive_cell_count | adaptive_cell_count() -> Int | immune_system | Immunology | -- |
| fn | antibody_class_count | antibody_class_count() -> Int | immune_system | Immunology | -- |
| fn | mhc_molecule_count | mhc_molecule_count() -> Int | immune_system | Immunology | -- |
| fn | complement_component_count | complement_component_count() -> Int | immune_system | Immunology | -- |
| fn | cytokine_count | cytokine_count() -> Int | immune_system | Immunology | -- |
| fn | pattern_receptor_count | pattern_receptor_count() -> Int | immune_system | Immunology | -- |
| fn | total_immune_entry_count | total_immune_entry_count() -> Int | immune_system | Immunology | -- |
| struct | InnateCell | struct { name: String, lineage: String, surface_markers: String, key_protein: String, key_protein_accession: String, function_desc: String, location: String, lifespan: String, clinical: String, citation: String } | immune_system | Immunology | -- |
| struct | AdaptiveCell | struct { name: String, subset: String, surface_markers: String, key_cytokines: String, key_protein: String, key_protein_accession: String, function_desc: String, differentiation_signal: String, clinical: String, citation: String } | immune_system | Immunology | -- |
| struct | Antibody | struct { class_name: String, heavy_chain: String, structure: String, molecular_weight_kda: Float, serum_half_life_days: Float, serum_concentration_pct: Float, function_desc: String, placental_transfer: Bool, complement_activation: Bool, clinical: String, citation: String } | immune_system | Immunology | -- |
| struct | MhcMolecule | struct { name: String, mhc_class: Int, gene_locus: String, expression: String, peptide_length: String, function_desc: String, key_protein_accession: String, disease_association: String, clinical: String, citation: String } | immune_system | Immunology | -- |
| struct | ComplementComponent | struct { name: String, pathway: String, function_desc: String, key_protein_accession: String, deficiency_disease: String, citation: String } | immune_system | Immunology | -- |
| struct | Cytokine | struct { name: String, primary_source: String, target_cells: String, function_desc: String, key_protein_accession: String, clinical_relevance: String, citation: String } | immune_system | Immunology | -- |
| struct | PatternReceptor | struct { name: String, receptor_family: String, ligand: String, signaling_pathway: String, key_protein_accession: String, cellular_location: String, function_desc: String, citation: String } | immune_system | Immunology | -- |
| fn | hormone | hormone(n: String, sg: String, t: String, m: String, cl: String, ci: String) -> Hormone | endocrine | Physiology | -- |
| fn | enzyme | enzyme(n: String, g: String, u: String, r: String, cl: String, ci: String) -> Enzyme | endocrine | Physiology | -- |
| fn | receptor | receptor(n: String, rt: String, u: String, l: String, s: String, cl: String, ci: String) -> Receptor | endocrine | Physiology | -- |
| fn | feedback_axis | feedback_axis(n: String, s1: String, s2: String, s3: String, nf: String, ce: String, cd: String, ci: String) -> FeedbackAxis | endocrine | Physiology | -- |
| fn | adrenal_zone | adrenal_zone(zn: String, lo: String, pp: String, rg: String, ke: String, eu: String, cl: String, ci: String) -> AdrenalZone | endocrine | Physiology | -- |
| fn | cat_step | cat_step(sn: Int, su: String, pr: String, en: String, eg: String, eu: String, co: String, lo: String, ci: String) -> CatecholamineSynthStep | endocrine | Physiology | -- |
| fn | islet_cell | islet_cell(ct: String, pct: Float, hp: String, ps: String, pa: String, cl: String, ci: String) -> IsletCell | endocrine | Physiology | -- |
| fn | receptor_class | receptor_class(cn: String, he: String, lo: String, sm: String, os: String, du: String, ci: String) -> ReceptorClass | endocrine | Physiology | -- |
| fn | lookup_hypothalamic_hormone | lookup_hypothalamic_hormone(name: String) -> Hormone | endocrine | Physiology | CRH, TRH, GnRH, GHRH, somatostatin, dopamine |
| fn | lookup_anterior_pituitary | lookup_anterior_pituitary(name: String) -> Hormone | endocrine | Physiology | ACTH, TSH, FSH, LH, GH, prolactin |
| fn | lookup_posterior_pituitary | lookup_posterior_pituitary(name: String) -> Hormone | endocrine | Physiology | ADH, oxytocin |
| fn | lookup_thyroid_hormone | lookup_thyroid_hormone(name: String) -> Hormone | endocrine | Physiology | T4, T3, calcitonin |
| fn | lookup_thyroid_enzyme | lookup_thyroid_enzyme(name: String) -> Enzyme | endocrine | Physiology | NIS, TPO, thyroglobulin |
| fn | lookup_parathyroid | lookup_parathyroid(name: String) -> Hormone | endocrine | Physiology | PTH, calcitriol |
| fn | lookup_adrenal_zone | lookup_adrenal_zone(name: String) -> AdrenalZone | endocrine | Physiology | glomerulosa, fasciculata, reticularis |
| fn | lookup_adrenal_cortex_hormone | lookup_adrenal_cortex_hormone(name: String) -> Hormone | endocrine | Physiology | cortisol, aldosterone, DHEA |
| fn | lookup_catecholamine_step | lookup_catecholamine_step(step: Int) -> CatecholamineSynthStep | endocrine | Physiology | -- |
| fn | lookup_adrenal_medulla_hormone | lookup_adrenal_medulla_hormone(name: String) -> Hormone | endocrine | Physiology | epinephrine, norepinephrine |
| fn | lookup_islet_cell | lookup_islet_cell(name: String) -> IsletCell | endocrine | Physiology | beta, alpha, delta |
| fn | lookup_pancreatic_hormone | lookup_pancreatic_hormone(name: String) -> Hormone | endocrine | Physiology | insulin, glucagon |
| fn | lookup_gonadal_hormone | lookup_gonadal_hormone(name: String) -> Hormone | endocrine | Physiology | testosterone, estrogen, progesterone |
| fn | lookup_other_hormone | lookup_other_hormone(name: String) -> Hormone | endocrine | Physiology | leptin, ghrelin, ANP, BNP, erythropoietin, melatonin |
| fn | lookup_feedback_axis | lookup_feedback_axis(name: String) -> FeedbackAxis | endocrine | Physiology | HPA, HPT, HPG |
| fn | lookup_receptor_class | lookup_receptor_class(name: String) -> ReceptorClass | endocrine | Physiology | nuclear_steroid, nuclear_thyroid, GPCR, RTK, JAK_STAT |
| fn | lookup_endocrine_enzyme | lookup_endocrine_enzyme(name: String) -> Enzyme | endocrine | Physiology | aromatase, 5_alpha_reductase, StAR, CYP11A1, 21_hydroxylase |
| fn | lookup_endocrine_receptor | lookup_endocrine_receptor(name: String) -> Receptor | endocrine | Physiology | insulin_receptor, glucocorticoid_receptor, TSH_receptor, calcium_sensing_receptor, androgen_receptor |
| fn | lookup_hormone | lookup_hormone(name: String) -> Hormone | endocrine | Physiology | CRH, TRH, GnRH, GHRH, somatostatin, dopamine, ACTH, TSH, FSH, LH, ... (+29) |
| fn | hypothalamic_hormone_count | hypothalamic_hormone_count() -> Int | endocrine | Physiology | -- |
| fn | anterior_pituitary_hormone_count | anterior_pituitary_hormone_count() -> Int | endocrine | Physiology | -- |
| fn | posterior_pituitary_hormone_count | posterior_pituitary_hormone_count() -> Int | endocrine | Physiology | -- |
| fn | thyroid_hormone_count | thyroid_hormone_count() -> Int | endocrine | Physiology | -- |
| fn | parathyroid_hormone_count | parathyroid_hormone_count() -> Int | endocrine | Physiology | -- |
| fn | adrenal_cortex_hormone_count | adrenal_cortex_hormone_count() -> Int | endocrine | Physiology | -- |
| fn | adrenal_medulla_hormone_count | adrenal_medulla_hormone_count() -> Int | endocrine | Physiology | -- |
| fn | pancreatic_hormone_count | pancreatic_hormone_count() -> Int | endocrine | Physiology | -- |
| fn | gonadal_hormone_count | gonadal_hormone_count() -> Int | endocrine | Physiology | -- |
| fn | other_hormone_count | other_hormone_count() -> Int | endocrine | Physiology | -- |
| fn | total_hormone_count | total_hormone_count() -> Int | endocrine | Physiology | -- |
| fn | catecholamine_step_count | catecholamine_step_count() -> Int | endocrine | Physiology | -- |
| fn | feedback_axis_count | feedback_axis_count() -> Int | endocrine | Physiology | -- |
| fn | receptor_class_count | receptor_class_count() -> Int | endocrine | Physiology | -- |
| fn | adrenal_zone_count | adrenal_zone_count() -> Int | endocrine | Physiology | -- |
| fn | islet_cell_type_count | islet_cell_type_count() -> Int | endocrine | Physiology | -- |
| fn | endocrine_enzyme_count | endocrine_enzyme_count() -> Int | endocrine | Physiology | -- |
| fn | endocrine_receptor_count | endocrine_receptor_count() -> Int | endocrine | Physiology | -- |
| fn | thyroid_enzyme_count | thyroid_enzyme_count() -> Int | endocrine | Physiology | -- |
| fn | is_steroid_hormone | is_steroid_hormone(name: String) -> Bool | endocrine | Physiology | cortisol, aldosterone, DHEA, testosterone, estrogen, estradiol, progesterone, calcitriol, vitamin_D |
| fn | is_peptide_hormone | is_peptide_hormone(name: String) -> Bool | endocrine | Physiology | CRH, TRH, GnRH, GHRH, somatostatin, ACTH, TSH, FSH, LH, GH, ... (+12) |
| fn | is_amine_hormone | is_amine_hormone(name: String) -> Bool | endocrine | Physiology | T3, T4, epinephrine, norepinephrine, dopamine, melatonin |
| fn | uses_nuclear_receptor | uses_nuclear_receptor(name: String) -> Bool | endocrine | Physiology | cortisol, aldosterone, testosterone, estrogen, estradiol, progesterone, T3, T4, calcitriol, vitamin_D, ... (+1) |
| fn | uses_membrane_receptor | uses_membrane_receptor(name: String) -> Bool | endocrine | Physiology | CRH, TRH, GnRH, GHRH, somatostatin, dopamine, ACTH, TSH, FSH, LH, ... (+16) |
| struct | Hormone | struct { name: String, source_gland: String, target: String, mechanism: String, clinical: String, citation: String } | endocrine | Physiology | -- |
| struct | Enzyme | struct { name: String, gene: String, uniprot: String, reaction: String, clinical: String, citation: String } | endocrine | Physiology | -- |
| struct | Receptor | struct { name: String, receptor_type: String, uniprot: String, ligand: String, signaling: String, clinical: String, citation: String } | endocrine | Physiology | -- |
| struct | FeedbackAxis | struct { name: String, step_one: String, step_two: String, step_three: String, negative_feedback: String, clinical_excess: String, clinical_deficiency: String, citation: String } | endocrine | Physiology | -- |
| struct | AdrenalZone | struct { zone_name: String, location: String, primary_product: String, regulator: String, key_enzyme: String, enzyme_uniprot: String, clinical: String, citation: String } | endocrine | Physiology | -- |
| struct | CatecholamineSynthStep | struct { step_number: Int, substrate: String, product: String, enzyme_name: String, enzyme_gene: String, enzyme_uniprot: String, cofactor: String, location: String, citation: String } | endocrine | Physiology | -- |
| struct | IsletCell | struct { cell_type: String, percentage: Float, hormone_produced: String, primary_stimulus: String, primary_action: String, clinical: String, citation: String } | endocrine | Physiology | -- |
| struct | ReceptorClass | struct { class_name: String, hormone_examples: String, location: String, signaling_mechanism: String, onset_speed: String, duration: String, citation: String } | endocrine | Physiology | -- |
| fn | gf | gf(addr: Int, nm: String, abbr: String, up: String, gn: String, tgt: String, func: String, clin: String) -> GrowthFactor | hematology | Physiology | -- |
| fn | unknown_growth_factor | unknown_growth_factor() -> GrowthFactor | hematology | Physiology | -- |
| fn | lookup_growth_factor | lookup_growth_factor(addr: Int) -> GrowthFactor | hematology | Physiology | -- |
| fn | growth_factor_count | growth_factor_count() -> Int | hematology | Physiology | -- |
| fn | hp | hp(nm: String, abbr: String, lin: String, cd: String, grt: String, tf: String, rgf: String) -> HematopoieticProgenitor | hematology | Physiology | -- |
| fn | lookup_progenitor | lookup_progenitor(abbr: String) -> HematopoieticProgenitor | hematology | Physiology | HSC, CMP, CLP, GMP, MEP, proB, proT |
| fn | progenitor_count | progenitor_count() -> Int | hematology | Physiology | -- |
| fn | normal_rbc | normal_rbc() -> ErythrocyteProfile | hematology | Physiology | -- |
| fn | rbc_disease | rbc_disease(addr: Int, nm: String, inh: String, def: String, gn: String, chr: String, path: String, clin: String, tx: String) -> RBCDisease | hematology | Physiology | -- |
| fn | lookup_rbc_disease | lookup_rbc_disease(addr: Int) -> RBCDisease | hematology | Physiology | -- |
| fn | rbc_disease_count | rbc_disease_count() -> Int | hematology | Physiology | -- |
| fn | wbc | wbc(addr: Int, nm: String, lin: String, ct: String, pct: String, dia: Float, ls: String, nuc: String, gran: String, func: String, mk: String, elev: String, decr: String) -> LeukocyteType | hematology | Physiology | -- |
| fn | lookup_leukocyte | lookup_leukocyte(addr: Int) -> LeukocyteType | hematology | Physiology | -- |
| fn | leukocyte_count | leukocyte_count() -> Int | hematology | Physiology | -- |
| fn | normal_platelet | normal_platelet() -> PlateletProfile | hematology | Physiology | -- |
| fn | hb_chain | hb_chain(addr: Int, nm: String, gn: String, chr: String, up: String, res: Int, heme: String, role: String) -> HemoglobinChain | hematology | Physiology | -- |
| fn | lookup_hemoglobin_chain | lookup_hemoglobin_chain(addr: Int) -> HemoglobinChain | hematology | Physiology | -- |
| fn | hemoglobin_chain_count | hemoglobin_chain_count() -> Int | hematology | Physiology | -- |
| fn | hb_var | hb_var(addr: Int, nm: String, des: String, comp: String, mut_desc: String, path: String, clin: String, prev: String) -> HemoglobinVariant | hematology | Physiology | -- |
| fn | lookup_hemoglobin_variant | lookup_hemoglobin_variant(addr: Int) -> HemoglobinVariant | hematology | Physiology | -- |
| fn | hemoglobin_variant_count | hemoglobin_variant_count() -> Int | hematology | Physiology | -- |
| fn | normal_o2_binding | normal_o2_binding() -> OxygenBindingParams | hematology | Physiology | -- |
| fn | fetal_o2_binding | fetal_o2_binding() -> OxygenBindingParams | hematology | Physiology | -- |
| fn | o2_saturation | o2_saturation(po2: Float, p50: Float, n: Float) -> Float | hematology | Physiology | -- |
| fn | cf | cf(addr: Int, rn: String, nm: String, up: String, gn: String, chr: String, ft: String, pw: String, ab: String, act: String, cof: String, vk: Bool, dd: String, hl: Float) -> ClottingFactor | hematology | Physiology | -- |
| fn | unknown_clotting_factor | unknown_clotting_factor() -> ClottingFactor | hematology | Physiology | -- |
| fn | lookup_clotting_factor | lookup_clotting_factor(addr: Int) -> ClottingFactor | hematology | Physiology | -- |
| fn | clotting_factor_count | clotting_factor_count() -> Int | hematology | Physiology | -- |
| fn | clotting_factor_by_numeral | clotting_factor_by_numeral(rn: String) -> ClottingFactor | hematology | Physiology | I, II, III, IV, V, VII, VIII, IX, X, XI, ... (+5) |
| fn | lookup_coag_pathway | lookup_coag_pathway(name: String) -> CoagulationPathway | hematology | Physiology | intrinsic, extrinsic, common |
| fn | nac | nac(addr: Int, nm: String, up: String, gn: String, mech: String, tgt: String, def: String, clin: String) -> NaturalAnticoagulant | hematology | Physiology | -- |
| fn | lookup_anticoagulant | lookup_anticoagulant(addr: Int) -> NaturalAnticoagulant | hematology | Physiology | -- |
| fn | natural_anticoagulant_count | natural_anticoagulant_count() -> Int | hematology | Physiology | -- |
| fn | acd | acd(addr: Int, nm: String, dc: String, mech: String, tgt: String, rt: String, mon: String, rev: String, se: String) -> AnticoagulantDrug | hematology | Physiology | -- |
| fn | lookup_anticoagulant_drug | lookup_anticoagulant_drug(addr: Int) -> AnticoagulantDrug | hematology | Physiology | -- |
| fn | anticoagulant_drug_count | anticoagulant_drug_count() -> Int | hematology | Physiology | -- |
| fn | fib | fib(addr: Int, nm: String, up: String, gn: String, ct: String, mech: String, clin: String) -> FibrinolyticComponent | hematology | Physiology | -- |
| fn | lookup_fibrinolytic | lookup_fibrinolytic(addr: Int) -> FibrinolyticComponent | hematology | Physiology | -- |
| fn | fibrinolytic_count | fibrinolytic_count() -> Int | hematology | Physiology | -- |
| fn | bt | bt(addr: Int, abo: String, ag: String, ab: String, gen: String, don: String, rec: String, freq: String, enz: String) -> BloodType | hematology | Physiology | -- |
| fn | lookup_blood_type | lookup_blood_type(addr: Int) -> BloodType | hematology | Physiology | -- |
| fn | blood_type_count | blood_type_count() -> Int | hematology | Physiology | -- |
| fn | rh_positive | rh_positive() -> RhSystem | hematology | Physiology | -- |
| fn | rh_negative | rh_negative() -> RhSystem | hematology | Physiology | -- |
| fn | cbc | cbc(addr: Int, nm: String, abbr: String, unit: String, nrm: String, nrf: String, meas: String, elev: String, decr: String) -> CBCParameter | hematology | Physiology | -- |
| fn | lookup_cbc | lookup_cbc(addr: Int) -> CBCParameter | hematology | Physiology | -- |
| fn | cbc_parameter_count | cbc_parameter_count() -> Int | hematology | Physiology | -- |
| fn | cbc_by_abbreviation | cbc_by_abbreviation(abbr: String) -> CBCParameter | hematology | Physiology | WBC, RBC, Hgb, Hct, MCV, MCH, MCHC, RDW, PLT, Retic |
| fn | classify_anemia_by_mcv | classify_anemia_by_mcv(mcv: Float) -> String | hematology | Physiology | -- |
| fn | is_anemic_male | is_anemic_male(hgb: Float) -> Bool | hematology | Physiology | -- |
| fn | is_anemic_female | is_anemic_female(hgb: Float) -> Bool | hematology | Physiology | -- |
| fn | is_thrombocytopenic | is_thrombocytopenic(plt: Float) -> Bool | hematology | Physiology | -- |
| fn | is_neutropenic | is_neutropenic(anc: Float) -> Bool | hematology | Physiology | -- |
| fn | is_leukocytosis | is_leukocytosis(wbc: Float) -> Bool | hematology | Physiology | -- |
| fn | differentiate_microcytic | differentiate_microcytic(rdw: Float, mcv: Float) -> String | hematology | Physiology | -- |
| fn | calculate_mentzer_index | calculate_mentzer_index(mcv: Float, rbc_count: Float) -> Float | hematology | Physiology | -- |
| fn | interpret_mentzer | interpret_mentzer(index_val: Float) -> String | hematology | Physiology | -- |
| fn | hematology_total_structs | hematology_total_structs() -> Int | hematology | Physiology | -- |
| fn | hematology_total_lookup_entries | hematology_total_lookup_entries() -> Int | hematology | Physiology | -- |
| struct | GrowthFactor | struct { address: Int, name: String, abbreviation: String, uniprot: String, gene: String, target_lineage: String, primary_function: String, clinical_use: String } | hematology | Physiology | -- |
| struct | HematopoieticProgenitor | struct { name: String, abbreviation: String, lineage: String, cd_markers: String, gives_rise_to: String, key_transcription_factors: String, required_growth_factors: String } | hematology | Physiology | -- |
| struct | ErythrocyteProfile | struct { diameter_um: Float, volume_fl: Float, lifespan_days: Int, hemoglobin_pg_per_cell: Float, surface_area_um2: Float, shape: String, nucleus: Bool, mitochondria: Bool, energy_source: String, normal_count_male_per_L: String, normal_count_female_per_L: String, key_membrane_proteins: String, destruction_site: String } | hematology | Physiology | -- |
| struct | RBCDisease | struct { address: Int, name: String, inheritance: String, molecular_defect: String, affected_gene: String, chromosome: String, pathophysiology: String, clinical_features: String, treatment: String } | hematology | Physiology | -- |
| struct | LeukocyteType | struct { address: Int, name: String, lineage: String, normal_count_per_L: String, percentage_of_wbc: String, diameter_um: Float, lifespan: String, nucleus_shape: String, granule_staining: String, primary_function: String, key_markers: String, clinical_significance_if_elevated: String, clinical_significance_if_decreased: String } | hematology | Physiology | -- |
| struct | PlateletProfile | struct { diameter_um: Float, volume_fl: Float, normal_count_per_L: String, lifespan_days: Int, parent_cell: String, platelets_per_megakaryocyte: String, nucleus: Bool, key_surface_receptors: String, granule_types: String, alpha_granule_contents: String, dense_granule_contents: String, primary_functions: String, destruction_site: String, key_activators: String } | hematology | Physiology | -- |
| struct | HemoglobinChain | struct { address: Int, name: String, gene: String, chromosome: String, uniprot: String, residues: Int, heme_binding_residue: String, role: String } | hematology | Physiology | -- |
| struct | HemoglobinVariant | struct { address: Int, name: String, designation: String, composition: String, mutation: String, pathophysiology: String, clinical_significance: String, prevalence: String } | hematology | Physiology | -- |
| struct | OxygenBindingParams | struct { p50_mmHg: Float, hill_coefficient: Float, bohr_effect_description: String, bpg_effect_description: String, temperature_effect: String, co2_effect: String } | hematology | Physiology | -- |
| struct | ClottingFactor | struct { address: Int, roman_numeral: String, name: String, uniprot: String, gene: String, chromosome: String, factor_type: String, pathway: String, activated_by: String, activates: String, cofactor_for: String, vitamin_k_dependent: Bool, deficiency_disease: String, half_life_hours: Float } | hematology | Physiology | -- |
| struct | CoagulationPathway | struct { name: String, lab_test: String, normal_range: String, initiation: String, cascade_steps: String, endpoint: String, clinical_prolongation: String } | hematology | Physiology | -- |
| struct | NaturalAnticoagulant | struct { address: Int, name: String, uniprot: String, gene: String, mechanism: String, targets_inhibited: String, deficiency_consequence: String, clinical_notes: String } | hematology | Physiology | -- |
| struct | AnticoagulantDrug | struct { address: Int, name: String, drug_class: String, mechanism: String, target: String, route: String, monitoring: String, reversal_agent: String, key_side_effects: String } | hematology | Physiology | -- |
| struct | FibrinolyticComponent | struct { address: Int, name: String, uniprot: String, gene: String, component_type: String, mechanism: String, clinical_significance: String } | hematology | Physiology | -- |
| struct | BloodType | struct { address: Int, abo_type: String, antigens_on_rbc: String, antibodies_in_plasma: String, genotypes: String, can_donate_rbc_to: String, can_receive_rbc_from: String, frequency_caucasian: String, transferase_enzyme: String } | hematology | Physiology | -- |
| struct | RhSystem | struct { d_antigen_present: Bool, rh_designation: String, genotype: String, clinical_significance: String, hdfn_risk: String, prevention: String } | hematology | Physiology | -- |
| struct | CBCParameter | struct { address: Int, name: String, abbreviation: String, unit: String, normal_range_male: String, normal_range_female: String, what_it_measures: String, elevated_significance: String, decreased_significance: String } | hematology | Physiology | -- |
| fn | nseg | nseg(n: String, ab: String, ep: String, pw: String, pn: String, pf: String, kt: String, fr: Float, ci: String) -> NephronSegment | renal | Physiology | -- |
| fn | rtrans | rtrans(n: String, g: String, ac: String, seg: String, mem: String, im: String, st: String, es: String, inh: String, cr: String, ci: String) -> RenalTransporter | renal | Physiology | -- |
| fn | gparam | gparam(n: String, nv: Float, u: String, d: String, de: String, ci: String) -> GlomerularParameter | renal | Physiology | -- |
| fn | raas | raas(sn: Int, n: String, g: String, ac: String, so: String, act: String, ct: String, ci: String) -> RAASComponent | renal | Physiology | -- |
| fn | diur | diur(n: String, dc: String, ts: String, tt: String, mech: String, se: String, cu: String, ci: String) -> Diuretic | renal | Physiology | -- |
| fn | ckd | ckd(sl: String, gl: Float, gh: Float, de: String, ac: String, ci: String) -> CKDStage | renal | Physiology | -- |
| fn | abproc | abproc(n: String, seg: String, et: String, ac: String, mech: String, ne: String, ci: String) -> AcidBaseProcess | renal | Physiology | -- |
| fn | csyn | csyn(n: String, cat: String, pp: String, kf: String, pr: String, co: String, ex: String, ci: String) -> ClinicalSyndrome | renal | Physiology | -- |
| fn | hreg | hreg(n: String, so: String, tr: String, re: String, ra: String, eff: String, nr: String, ci: String) -> HormonalRegulator | renal | Physiology | -- |
| fn | lookup_nephron_segment | lookup_nephron_segment(seg: String) -> NephronSegment | renal | Physiology | glomerulus, bowmans_capsule, pct, thin_descending, thin_ascending, thick_ascending, dct, collecting_duct |
| fn | lookup_starling_force | lookup_starling_force(force: String) -> GlomerularParameter | renal | Physiology | pgc, pbs, pi_gc, pi_bs, net, kf, gfr, rpf, ff |
| fn | filtration_barrier_layers | filtration_barrier_layers() -> String | renal | Physiology | -- |
| fn | lookup_transporter | lookup_transporter(name: String) -> RenalTransporter | renal | Physiology | na_k_atpase, sglt2, sglt1, nhe3, nkcc2, romk, ncc, enac, aqp1, aqp2, ... (+5) |
| fn | lookup_raas | lookup_raas(step: Int) -> RAASComponent | renal | Physiology | -- |
| fn | lookup_hormonal_regulator | lookup_hormonal_regulator(hormone: String) -> HormonalRegulator | renal | Physiology | adh, anp, bnp, pth, calcitriol, fgf23 |
| fn | lookup_acid_base | lookup_acid_base(process: String) -> AcidBaseProcess | renal | Physiology | hco3_reabsorption, h_secretion, ammonium, type_a_intercalated, type_b_intercalated |
| fn | medullary_gradient | medullary_gradient() -> String | renal | Physiology | -- |
| fn | urine_osmolality_range | urine_osmolality_range() -> String | renal | Physiology | -- |
| fn | free_water_clearance_concept | free_water_clearance_concept() -> String | renal | Physiology | -- |
| fn | lookup_diuretic | lookup_diuretic(name: String) -> Diuretic | renal | Physiology | acetazolamide, mannitol, furosemide, bumetanide, hctz, chlorthalidone, spironolactone, eplerenone, amiloride |
| fn | lookup_ckd_stage | lookup_ckd_stage(gfr_category: String) -> CKDStage | renal | Physiology | g1, g2, g3a, g3b, g4, g5 |
| fn | lookup_aki_category | lookup_aki_category(category: String) -> String | renal | Physiology | prerenal, intrinsic, postrenal |
| fn | lookup_clinical_syndrome | lookup_clinical_syndrome(syndrome: String) -> ClinicalSyndrome | renal | Physiology | nephrotic, nephritic, rpgn |
| fn | tubuloglomerular_feedback | tubuloglomerular_feedback() -> String | renal | Physiology | -- |
| fn | myogenic_response | myogenic_response() -> String | renal | Physiology | -- |
| fn | gfr_normal | gfr_normal() -> Float | renal | Physiology | -- |
| fn | gfr_units | gfr_units() -> String | renal | Physiology | -- |
| fn | ckd_epi_citation | ckd_epi_citation() -> String | renal | Physiology | -- |
| fn | fractional_excretion_na_formula | fractional_excretion_na_formula() -> String | renal | Physiology | -- |
| fn | renal_clearance_formula | renal_clearance_formula() -> String | renal | Physiology | -- |
| fn | nephron_segment_count | nephron_segment_count() -> Int | renal | Physiology | -- |
| fn | transporter_count | transporter_count() -> Int | renal | Physiology | -- |
| fn | starling_force_count | starling_force_count() -> Int | renal | Physiology | -- |
| fn | raas_step_count | raas_step_count() -> Int | renal | Physiology | -- |
| fn | diuretic_count | diuretic_count() -> Int | renal | Physiology | -- |
| fn | ckd_stage_count | ckd_stage_count() -> Int | renal | Physiology | -- |
| fn | acid_base_process_count | acid_base_process_count() -> Int | renal | Physiology | -- |
| fn | hormonal_regulator_count | hormonal_regulator_count() -> Int | renal | Physiology | -- |
| fn | clinical_syndrome_count | clinical_syndrome_count() -> Int | renal | Physiology | -- |
| fn | aki_category_count | aki_category_count() -> Int | renal | Physiology | -- |
| struct | NephronSegment | struct { name: String, abbreviation: String, epithelium: String, permeability_water: String, permeability_nacl: String, primary_function: String, key_transporters: String, fraction_na_reabsorbed: Float, citation: String } | renal | Physiology | -- |
| struct | RenalTransporter | struct { name: String, gene: String, accession: String, segment: String, membrane: String, ions_moved: String, stoichiometry: String, energy_source: String, inhibitor: String, clinical_relevance: String, citation: String } | renal | Physiology | -- |
| struct | GlomerularParameter | struct { name: String, normal_value: Float, unit: String, direction: String, description: String, citation: String } | renal | Physiology | -- |
| struct | RAASComponent | struct { step_number: Int, name: String, gene: String, accession: String, source: String, action: String, clinical_target: String, citation: String } | renal | Physiology | -- |
| struct | Diuretic | struct { name: String, drug_class: String, target_segment: String, target_transporter: String, mechanism: String, side_effects: String, clinical_use: String, citation: String } | renal | Physiology | -- |
| struct | CKDStage | struct { stage_label: String, gfr_low: Float, gfr_high: Float, description: String, action: String, citation: String } | renal | Physiology | -- |
| struct | AcidBaseProcess | struct { name: String, segment: String, enzyme_or_transporter: String, accession: String, mechanism: String, net_effect: String, citation: String } | renal | Physiology | -- |
| struct | ClinicalSyndrome | struct { name: String, category: String, pathophysiology: String, key_findings: String, proteinuria: String, complement: String, examples: String, citation: String } | renal | Physiology | -- |
| struct | HormonalRegulator | struct { name: String, source: String, trigger: String, receptor: String, receptor_accession: String, renal_effect: String, net_result: String, citation: String } | renal | Physiology | -- |
| fn | synth | synth(sn: Int, sub: String, prod: String, enz: String, eg: String, ea: String, cof: String, rl: Bool, ci: String) -> SynthesisStep | neurotransmitter_pathways | Physiology | -- |
| fn | recep | recep(n: String, g: String, a: String, rt: String, co: String, ip: String, pl: String, fe: String, ci: String) -> Receptor | neurotransmitter_pathways | Physiology | -- |
| fn | degrad | degrad(e: String, eg: String, ea: String, sub: String, prod: String, loc: String, inh: String, cl: String, ci: String) -> DegradationPathway | neurotransmitter_pathways | Physiology | -- |
| fn | transp | transp(n: String, g: String, a: String, tr: String, mech: String, inh: String, cl: String, ci: String) -> Transporter | neurotransmitter_pathways | Physiology | -- |
| fn | ntpath | ntpath(n: String, o: String, t: String, fr: String, cr: String, ci: String) -> NTPathway | neurotransmitter_pathways | Physiology | -- |
| fn | clinical | clinical(tr: String, cond: String, mech: String, pharm: String, dta: String, ci: String) -> ClinicalEntry | neurotransmitter_pathways | Physiology | -- |
| fn | dopamine_synthesis | dopamine_synthesis(step: Int) -> SynthesisStep | neurotransmitter_pathways | Physiology | -- |
| fn | dopamine_receptor | dopamine_receptor(name: String) -> Receptor | neurotransmitter_pathways | Physiology | D1, D2, D3, D4, D5 |
| fn | dopamine_pathway | dopamine_pathway(name: String) -> NTPathway | neurotransmitter_pathways | Physiology | mesolimbic, mesocortical, nigrostriatal, tuberoinfundibular |
| fn | dopamine_degradation | dopamine_degradation(enzyme: String) -> DegradationPathway | neurotransmitter_pathways | Physiology | MAO-A, MAO-B, COMT |
| fn | dopamine_transporter | dopamine_transporter() -> Transporter | neurotransmitter_pathways | Physiology | -- |
| fn | dopamine_clinical | dopamine_clinical(condition: String) -> ClinicalEntry | neurotransmitter_pathways | Physiology | parkinson, schizophrenia, addiction, adhd |
| fn | serotonin_synthesis | serotonin_synthesis(step: Int) -> SynthesisStep | neurotransmitter_pathways | Physiology | -- |
| fn | serotonin_receptor | serotonin_receptor(name: String) -> Receptor | neurotransmitter_pathways | Physiology | 5-HT1A, 5-HT1B, 5-HT1D, 5-HT1E, 5-HT1F, 5-HT2A, 5-HT2B, 5-HT2C, 5-HT3, 5-HT4, ... (+3) |
| fn | serotonin_degradation | serotonin_degradation() -> DegradationPathway | neurotransmitter_pathways | Physiology | -- |
| fn | serotonin_transporter | serotonin_transporter() -> Transporter | neurotransmitter_pathways | Physiology | -- |
| fn | serotonin_clinical | serotonin_clinical(condition: String) -> ClinicalEntry | neurotransmitter_pathways | Physiology | depression, anxiety, migraine, carcinoid |
| fn | norepinephrine_synthesis | norepinephrine_synthesis(step: Int) -> SynthesisStep | neurotransmitter_pathways | Physiology | -- |
| fn | adrenergic_receptor | adrenergic_receptor(name: String) -> Receptor | neurotransmitter_pathways | Physiology | alpha1A, alpha1B, alpha1D, alpha2A, alpha2B, alpha2C, beta1, beta2, beta3 |
| fn | norepinephrine_degradation | norepinephrine_degradation(enzyme: String) -> DegradationPathway | neurotransmitter_pathways | Physiology | MAO-A, COMT |
| fn | norepinephrine_transporter | norepinephrine_transporter() -> Transporter | neurotransmitter_pathways | Physiology | -- |
| fn | norepinephrine_clinical | norepinephrine_clinical(condition: String) -> ClinicalEntry | neurotransmitter_pathways | Physiology | snri_depression, clonidine, prazosin |
| fn | acetylcholine_synthesis | acetylcholine_synthesis() -> SynthesisStep | neurotransmitter_pathways | Physiology | -- |
| fn | acetylcholine_receptor | acetylcholine_receptor(name: String) -> Receptor | neurotransmitter_pathways | Physiology | nAChR_muscle, nAChR_ganglionic, nAChR_CNS, M1, M2, M3, M4, M5 |
| fn | acetylcholine_degradation | acetylcholine_degradation() -> DegradationPathway | neurotransmitter_pathways | Physiology | -- |
| fn | acetylcholine_clinical | acetylcholine_clinical(condition: String) -> ClinicalEntry | neurotransmitter_pathways | Physiology | myasthenia_gravis, alzheimer, organophosphate, succinylcholine |
| fn | gaba_synthesis | gaba_synthesis() -> SynthesisStep | neurotransmitter_pathways | Physiology | -- |
| fn | gaba_receptor | gaba_receptor(name: String) -> Receptor | neurotransmitter_pathways | Physiology | GABA-A, GABA-B, GABA-A-rho |
| fn | gaba_degradation | gaba_degradation() -> DegradationPathway | neurotransmitter_pathways | Physiology | -- |
| fn | gaba_transporter | gaba_transporter(name: String) -> Transporter | neurotransmitter_pathways | Physiology | GAT1, GAT3 |
| fn | gaba_clinical | gaba_clinical(condition: String) -> ClinicalEntry | neurotransmitter_pathways | Physiology | benzodiazepines, barbiturates, epilepsy |
| fn | glutamate_synthesis | glutamate_synthesis(step: Int) -> SynthesisStep | neurotransmitter_pathways | Physiology | -- |
| fn | glutamate_receptor | glutamate_receptor(name: String) -> Receptor | neurotransmitter_pathways | Physiology | NMDA, AMPA, kainate, mGluR1, mGluR5, mGluR2, mGluR3, mGluR4, mGluR6, mGluR7, ... (+1) |
| fn | glutamate_transporter | glutamate_transporter(name: String) -> Transporter | neurotransmitter_pathways | Physiology | EAAT1, EAAT2, EAAT3, EAAT4, EAAT5 |
| fn | glutamate_clinical | glutamate_clinical(condition: String) -> ClinicalEntry | neurotransmitter_pathways | Physiology | excitotoxicity, ketamine, memantine, als |
| fn | glycine_receptor | glycine_receptor() -> GlycineReceptor | neurotransmitter_pathways | Physiology | -- |
| fn | glycine_nmda_coagonist_note | glycine_nmda_coagonist_note() -> String | neurotransmitter_pathways | Physiology | -- |
| fn | histamine_receptor | histamine_receptor(name: String) -> Receptor | neurotransmitter_pathways | Physiology | H1, H2, H3, H4 |
| fn | histamine_synthesis_note | histamine_synthesis_note() -> String | neurotransmitter_pathways | Physiology | -- |
| fn | opioid_peptide | opioid_peptide(name: String) -> OpioidPeptide | neurotransmitter_pathways | Physiology | beta-endorphin, met-enkephalin, leu-enkephalin, dynorphin_A, nociceptin |
| fn | opioid_receptor | opioid_receptor(name: String) -> Receptor | neurotransmitter_pathways | Physiology | mu, delta, kappa, NOP |
| fn | endocannabinoid | endocannabinoid(name: String) -> Endocannabinoid | neurotransmitter_pathways | Physiology | anandamide, 2-AG |
| fn | cannabinoid_receptor | cannabinoid_receptor(name: String) -> Receptor | neurotransmitter_pathways | Physiology | CB1, CB2 |
| fn | nos_isoform | nos_isoform(name: String) -> NOSynthase | neurotransmitter_pathways | Physiology | nNOS, eNOS, iNOS |
| fn | nitric_oxide_properties | nitric_oxide_properties() -> String | neurotransmitter_pathways | Physiology | -- |
| fn | vesicular_transporter | vesicular_transporter(name: String) -> Transporter | neurotransmitter_pathways | Physiology | VMAT2, VAChT, VGAT, VGluT1 |
| fn | glutamine_cycle_step | glutamine_cycle_step(step: Int) -> GlutamineShuttleStep | neurotransmitter_pathways | Physiology | -- |
| fn | transmitter_overview | transmitter_overview(name: String) -> String | neurotransmitter_pathways | Physiology | dopamine, serotonin, norepinephrine, acetylcholine, gaba, glutamate, glycine, histamine, endocannabinoid, nitric_oxide |
| fn | dopamine_receptor_count | dopamine_receptor_count() -> Int | neurotransmitter_pathways | Physiology | -- |
| fn | serotonin_receptor_count | serotonin_receptor_count() -> Int | neurotransmitter_pathways | Physiology | -- |
| fn | adrenergic_receptor_count | adrenergic_receptor_count() -> Int | neurotransmitter_pathways | Physiology | -- |
| fn | acetylcholine_receptor_count | acetylcholine_receptor_count() -> Int | neurotransmitter_pathways | Physiology | -- |
| fn | gaba_receptor_count | gaba_receptor_count() -> Int | neurotransmitter_pathways | Physiology | -- |
| fn | glutamate_receptor_count | glutamate_receptor_count() -> Int | neurotransmitter_pathways | Physiology | -- |
| fn | histamine_receptor_count | histamine_receptor_count() -> Int | neurotransmitter_pathways | Physiology | -- |
| fn | opioid_receptor_count | opioid_receptor_count() -> Int | neurotransmitter_pathways | Physiology | -- |
| fn | cannabinoid_receptor_count | cannabinoid_receptor_count() -> Int | neurotransmitter_pathways | Physiology | -- |
| fn | nos_isoform_count | nos_isoform_count() -> Int | neurotransmitter_pathways | Physiology | -- |
| fn | total_receptor_count | total_receptor_count() -> Int | neurotransmitter_pathways | Physiology | -- |
| fn | total_transmitter_systems | total_transmitter_systems() -> Int | neurotransmitter_pathways | Physiology | -- |
| fn | vesicular_transporter_count | vesicular_transporter_count() -> Int | neurotransmitter_pathways | Physiology | -- |
| fn | glutamine_cycle_step_count | glutamine_cycle_step_count() -> Int | neurotransmitter_pathways | Physiology | -- |
| fn | eaat_transporter_count | eaat_transporter_count() -> Int | neurotransmitter_pathways | Physiology | -- |
| struct | SynthesisStep | struct { step_number: Int, substrate: String, product: String, enzyme: String, enzyme_gene: String, enzyme_accession: String, cofactor: String, rate_limiting: Bool, citation: String } | neurotransmitter_pathways | Physiology | -- |
| struct | Receptor | struct { name: String, gene: String, accession: String, receptor_type: String, coupling: String, ion_permeability: String, primary_locations: String, functional_effect: String, citation: String } | neurotransmitter_pathways | Physiology | -- |
| struct | DegradationPathway | struct { enzyme: String, enzyme_gene: String, enzyme_accession: String, substrate: String, product: String, location: String, inhibitor: String, clinical_use: String, citation: String } | neurotransmitter_pathways | Physiology | -- |
| struct | Transporter | struct { name: String, gene: String, accession: String, transmitter: String, mechanism: String, inhibitor: String, clinical_use: String, citation: String } | neurotransmitter_pathways | Physiology | -- |
| struct | NTPathway | struct { name: String, origin: String, target: String, functional_role: String, clinical_relevance: String, citation: String } | neurotransmitter_pathways | Physiology | -- |
| struct | ClinicalEntry | struct { transmitter: String, condition: String, mechanism: String, pharmacotherapy: String, drug_target_accession: String, citation: String } | neurotransmitter_pathways | Physiology | -- |
| struct | GlycineReceptor | struct { name: String, gene: String, accession: String, receptor_type: String, ion_permeability: String, location: String, function_desc: String, antagonist: String, citation: String } | neurotransmitter_pathways | Physiology | -- |
| struct | OpioidPeptide | struct { name: String, precursor: String, precursor_gene: String, precursor_accession: String, sequence_example: String, primary_receptor: String, citation: String } | neurotransmitter_pathways | Physiology | -- |
| struct | Endocannabinoid | struct { name: String, full_name: String, synthesis_enzyme: String, synthesis_accession: String, degradation_enzyme: String, degradation_accession: String, primary_receptor: String, mechanism: String, citation: String } | neurotransmitter_pathways | Physiology | -- |
| struct | NOSynthase | struct { name: String, gene: String, accession: String, isoform_type: String, location: String, regulation: String, function_desc: String, citation: String } | neurotransmitter_pathways | Physiology | -- |
| struct | GlutamineShuttleStep | struct { step_number: Int, compartment: String, substrate: String, product: String, enzyme_or_transporter: String, accession: String, description: String } | neurotransmitter_pathways | Physiology | -- |
| fn | pkp | pkp(dn: String, f: Float, tm: Float, hl: Float, vd: Float, cl: Float, pb: Float, re: Float, he: Float, ci: String) -> PKParameters | adme | Pharmacology | -- |
| fn | bioavailability | bioavailability(auc_oral: Float, auc_iv: Float, dose_iv: Float, dose_oral: Float) -> Float | adme | Pharmacology | -- |
| fn | absorption_rate | absorption_rate(ka: Float, dose: Float, f: Float, t: Float) -> Float | adme | Pharmacology | -- |
| fn | amount_absorbed | amount_absorbed(dose: Float, f: Float, ka: Float, t: Float) -> Float | adme | Pharmacology | -- |
| fn | tmax | tmax(ka: Float, ke: Float) -> Float | adme | Pharmacology | -- |
| fn | volume_of_distribution | volume_of_distribution(dose: Float, c0: Float) -> Float | adme | Pharmacology | -- |
| fn | free_concentration | free_concentration(total_conc: Float, protein_binding_fraction: Float) -> Float | adme | Pharmacology | -- |
| fn | vd_apparent | vd_apparent(vd_unbound: Float, fu_plasma: Float, fu_tissue: Float) -> Float | adme | Pharmacology | -- |
| fn | displaced_free_fraction | displaced_free_fraction(original_fu: Float, displacement_factor: Float) -> Float | adme | Pharmacology | -- |
| fn | bbb_likely | bbb_likely(log_p: Float, molecular_weight: Float) -> Bool | adme | Pharmacology | -- |
| fn | extraction_ratio | extraction_ratio(bioavailability_f: Float) -> Float | adme | Pharmacology | -- |
| fn | hepatic_clearance | hepatic_clearance(hepatic_blood_flow: Float, extraction: Float) -> Float | adme | Pharmacology | -- |
| fn | normal_hepatic_blood_flow | normal_hepatic_blood_flow() -> Float | adme | Pharmacology | -- |
| fn | intrinsic_clearance | intrinsic_clearance(hepatic_flow: Float, extraction: Float) -> Float | adme | Pharmacology | -- |
| fn | phase1_description | phase1_description() -> String | adme | Pharmacology | -- |
| fn | phase2_description | phase2_description() -> String | adme | Pharmacology | -- |
| fn | elimination_rate_constant | elimination_rate_constant(t_half: Float) -> Float | adme | Pharmacology | -- |
| fn | half_life_from_cl_vd | half_life_from_cl_vd(clearance: Float, vd: Float) -> Float | adme | Pharmacology | -- |
| fn | total_clearance | total_clearance(ke: Float, vd: Float) -> Float | adme | Pharmacology | -- |
| fn | renal_clearance | renal_clearance(total_cl: Float, fraction_renal: Float) -> Float | adme | Pharmacology | -- |
| fn | nonrenal_clearance | nonrenal_clearance(total_cl: Float, renal_cl: Float) -> Float | adme | Pharmacology | -- |
| fn | concentration_iv | concentration_iv(dose: Float, vd: Float, ke: Float, t: Float) -> Float | adme | Pharmacology | -- |
| fn | concentration_oral | concentration_oral(dose: Float, f: Float, vd: Float, ka: Float, ke: Float, t: Float) -> Float | adme | Pharmacology | -- |
| fn | auc_iv | auc_iv(dose: Float, clearance: Float) -> Float | adme | Pharmacology | -- |
| fn | auc_oral | auc_oral(dose: Float, f: Float, clearance: Float) -> Float | adme | Pharmacology | -- |
| fn | accumulation_factor | accumulation_factor(ke: Float, tau: Float) -> Float | adme | Pharmacology | -- |
| fn | css_average | css_average(dose: Float, f: Float, clearance: Float, tau: Float) -> Float | adme | Pharmacology | -- |
| fn | css_max | css_max(dose: Float, f: Float, vd: Float, ke: Float, tau: Float) -> Float | adme | Pharmacology | -- |
| fn | css_min | css_min(css_max_val: Float, ke: Float, tau: Float) -> Float | adme | Pharmacology | -- |
| fn | time_to_steady_state | time_to_steady_state(t_half: Float) -> Float | adme | Pharmacology | -- |
| fn | doses_to_steady_state | doses_to_steady_state(t_half: Float, tau: Float) -> Float | adme | Pharmacology | -- |
| fn | loading_dose | loading_dose(target_css: Float, vd: Float, f: Float) -> Float | adme | Pharmacology | -- |
| fn | maintenance_dose | maintenance_dose(target_css: Float, clearance: Float, tau: Float, f: Float) -> Float | adme | Pharmacology | -- |
| fn | cockcroft_gault | cockcroft_gault(age: Float, weight_kg: Float, serum_cr: Float, is_female: Bool) -> Float | adme | Pharmacology | -- |
| fn | renal_dose_fraction | renal_dose_fraction(crcl_patient: Float, crcl_normal: Float, fraction_renal: Float) -> Float | adme | Pharmacology | -- |
| fn | ckd_stage_by_gfr | ckd_stage_by_gfr(gfr: Float) -> String | adme | Pharmacology | -- |
| fn | child_pugh_class | child_pugh_class(score: Int) -> String | adme | Pharmacology | -- |
| fn | two_compartment_iv | two_compartment_iv(a_coeff: Float, alpha: Float, b_coeff: Float, beta: Float, t: Float) -> Float | adme | Pharmacology | -- |
| fn | distribution_half_life | distribution_half_life(alpha: Float) -> Float | adme | Pharmacology | -- |
| fn | terminal_half_life | terminal_half_life(beta: Float) -> Float | adme | Pharmacology | -- |
| fn | k21_from_macro | k21_from_macro(a_coeff: Float, alpha: Float, b_coeff: Float, beta: Float) -> Float | adme | Pharmacology | -- |
| fn | k10_from_macro | k10_from_macro(alpha: Float, beta: Float, k21: Float) -> Float | adme | Pharmacology | -- |
| fn | k12_from_macro | k12_from_macro(alpha: Float, beta: Float, k21: Float, k10: Float) -> Float | adme | Pharmacology | -- |
| fn | tdm_drug_requires_monitoring | tdm_drug_requires_monitoring(drug_name: String) -> Bool | adme | Pharmacology | VANCOMYCIN, GENTAMICIN, TOBRAMYCIN, AMIKACIN, PHENYTOIN, CARBAMAZEPINE, VALPROIC ACID, LITHIUM, DIGOXIN, THEOPHYLLINE, ... (+5) |
| fn | tdm_therapeutic_range | tdm_therapeutic_range(drug_name: String) -> String | adme | Pharmacology | VANCOMYCIN, GENTAMICIN, PHENYTOIN, LITHIUM, DIGOXIN, WARFARIN, TACROLIMUS, CYCLOSPORINE, VALPROIC ACID, THEOPHYLLINE, ... (+1) |
| fn | adme_function_count | adme_function_count() -> Int | adme | Pharmacology | -- |
| struct | PKParameters | struct { drug_name: String, bioavailability: Float, tmax_hours: Float, half_life_hours: Float, vd_liters: Float, clearance_ml_min: Float, protein_binding_pct: Float, renal_elimination_pct: Float, hepatic_elimination_pct: Float, citation: String } | adme | Pharmacology | -- |
| fn | bsa_mosteller | bsa_mosteller(height_cm: Float, weight_kg: Float) -> Float | dosing | Pharmacology | -- |
| fn | bsa_dubois | bsa_dubois(height_cm: Float, weight_kg: Float) -> Float | dosing | Pharmacology | -- |
| fn | ibw_male | ibw_male(height_inches: Float) -> Float | dosing | Pharmacology | -- |
| fn | ibw_female | ibw_female(height_inches: Float) -> Float | dosing | Pharmacology | -- |
| fn | abw | abw(ibw_kg: Float, actual_weight_kg: Float) -> Float | dosing | Pharmacology | -- |
| fn | bmi | bmi(weight_kg: Float, height_m: Float) -> Float | dosing | Pharmacology | -- |
| fn | bmi_classification | bmi_classification(bmi_val: Float) -> String | dosing | Pharmacology | -- |
| fn | cockcroft_gault | cockcroft_gault(age: Float, weight_kg: Float, scr: Float, is_female: Bool) -> Float | dosing | Pharmacology | -- |
| fn | cockcroft_gault_ibw | cockcroft_gault_ibw(age: Float, ibw_kg: Float, scr: Float, is_female: Bool) -> Float | dosing | Pharmacology | -- |
| fn | ckd_epi_2021 | ckd_epi_2021(age: Float, scr: Float, is_female: Bool) -> Float | dosing | Pharmacology | -- |
| fn | schwartz_pediatric | schwartz_pediatric(height_cm: Float, scr: Float) -> Float | dosing | Pharmacology | -- |
| fn | renal_dose_adjustment | renal_dose_adjustment(normal_dose: Float, crcl: Float, cutoff_high: Float, cutoff_mid: Float, cutoff_low: Float, frac_high: Float, frac_mid: Float, frac_low: Float, frac_below: Float) -> Float | dosing | Pharmacology | -- |
| fn | ckd_stage | ckd_stage(gfr: Float) -> String | dosing | Pharmacology | -- |
| fn | child_pugh_score | child_pugh_score(encephalopathy_grade: Int, ascites_grade: Int, bilirubin: Float, albumin: Float, inr: Float) -> Int | dosing | Pharmacology | -- |
| fn | child_pugh_class | child_pugh_class(score: Int) -> String | dosing | Pharmacology | -- |
| fn | meld_score | meld_score(bilirubin: Float, inr: Float, creatinine: Float) -> Float | dosing | Pharmacology | -- |
| fn | meld_na | meld_na(meld_val: Float, sodium: Float) -> Float | dosing | Pharmacology | -- |
| fn | clark_rule | clark_rule(adult_dose: Float, child_weight_lbs: Float) -> Float | dosing | Pharmacology | -- |
| fn | young_rule | young_rule(adult_dose: Float, child_age_years: Float) -> Float | dosing | Pharmacology | -- |
| fn | fried_rule | fried_rule(adult_dose: Float, child_age_months: Float) -> Float | dosing | Pharmacology | -- |
| fn | bsa_dosing | bsa_dosing(adult_dose: Float, child_bsa: Float) -> Float | dosing | Pharmacology | -- |
| fn | gentamicin_traditional | gentamicin_traditional(weight_kg: Float, crcl: Float) -> GentamicinDose | dosing | Pharmacology | -- |
| fn | vancomycin_auc_dosing | vancomycin_auc_dosing(target_auc: Float, clearance_l_hr: Float) -> Float | dosing | Pharmacology | -- |
| fn | vancomycin_trough_to_auc | vancomycin_trough_to_auc(trough: Float, dose_mg: Float, interval_hr: Float, vd_liters: Float, ke: Float) -> Float | dosing | Pharmacology | -- |
| fn | drip_rate_ml_hr | drip_rate_ml_hr(total_volume_ml: Float, hours: Float) -> Float | dosing | Pharmacology | -- |
| fn | drip_rate_gtt_min | drip_rate_gtt_min(total_volume_ml: Float, hours: Float, drop_factor: Float) -> Float | dosing | Pharmacology | -- |
| fn | mcg_kg_min_to_ml_hr | mcg_kg_min_to_ml_hr(dose_mcg_kg_min: Float, weight_kg: Float, concentration_mcg_ml: Float) -> Float | dosing | Pharmacology | -- |
| fn | mg_hr_to_ml_hr | mg_hr_to_ml_hr(dose_mg_hr: Float, concentration_mg_ml: Float) -> Float | dosing | Pharmacology | -- |
| fn | units_hr_to_ml_hr | units_hr_to_ml_hr(dose_units_hr: Float, concentration_units_ml: Float) -> Float | dosing | Pharmacology | -- |
| fn | ml_hr_to_mcg_kg_min | ml_hr_to_mcg_kg_min(rate_ml_hr: Float, weight_kg: Float, concentration_mcg_ml: Float) -> Float | dosing | Pharmacology | -- |
| fn | infusion_time_hours | infusion_time_hours(total_volume_ml: Float, rate_ml_hr: Float) -> Float | dosing | Pharmacology | -- |
| fn | corrected_sodium | corrected_sodium(measured_na: Float, glucose: Float) -> Float | dosing | Pharmacology | -- |
| fn | corrected_calcium | corrected_calcium(measured_ca: Float, albumin: Float) -> Float | dosing | Pharmacology | -- |
| fn | corrected_phenytoin | corrected_phenytoin(measured_level: Float, albumin: Float) -> Float | dosing | Pharmacology | -- |
| fn | corrected_phenytoin_renal | corrected_phenytoin_renal(measured_level: Float, albumin: Float) -> Float | dosing | Pharmacology | -- |
| fn | anion_gap | anion_gap(na: Float, cl: Float, hco3: Float) -> Float | dosing | Pharmacology | -- |
| fn | corrected_anion_gap | corrected_anion_gap(ag: Float, albumin: Float) -> Float | dosing | Pharmacology | -- |
| fn | delta_delta | delta_delta(ag: Float, hco3: Float) -> Float | dosing | Pharmacology | -- |
| fn | delta_delta_interpret | delta_delta_interpret(ratio: Float) -> String | dosing | Pharmacology | -- |
| fn | calculated_osmolality | calculated_osmolality(na: Float, glucose: Float, bun: Float) -> Float | dosing | Pharmacology | -- |
| fn | osmolal_gap | osmolal_gap(measured_osm: Float, calculated_osm: Float) -> Float | dosing | Pharmacology | -- |
| fn | calculated_osmolality_with_ethanol | calculated_osmolality_with_ethanol(na: Float, glucose: Float, bun: Float, ethanol_mg_dl: Float) -> Float | dosing | Pharmacology | -- |
| fn | mg_per_kg | mg_per_kg(dose_mg: Float, weight_kg: Float) -> Float | dosing | Pharmacology | -- |
| fn | dose_from_mg_kg | dose_from_mg_kg(mg_kg: Float, weight_kg: Float) -> Float | dosing | Pharmacology | -- |
| fn | mg_per_m2 | mg_per_m2(dose_mg: Float, bsa: Float) -> Float | dosing | Pharmacology | -- |
| fn | dose_from_mg_m2 | dose_from_mg_m2(mg_m2: Float, bsa: Float) -> Float | dosing | Pharmacology | -- |
| fn | dose_per_administration | dose_per_administration(daily_total_mg: Float, doses_per_day: Float) -> Float | dosing | Pharmacology | -- |
| fn | dose_with_cap | dose_with_cap(calculated_dose: Float, max_dose: Float) -> Float | dosing | Pharmacology | -- |
| fn | round_dose | round_dose(dose: Float, increment: Float) -> Float | dosing | Pharmacology | -- |
| fn | normal_scr_male | normal_scr_male() -> String | dosing | Pharmacology | -- |
| fn | normal_scr_female | normal_scr_female() -> String | dosing | Pharmacology | -- |
| fn | normal_bun | normal_bun() -> String | dosing | Pharmacology | -- |
| fn | normal_sodium | normal_sodium() -> String | dosing | Pharmacology | -- |
| fn | normal_potassium | normal_potassium() -> String | dosing | Pharmacology | -- |
| fn | normal_chloride | normal_chloride() -> String | dosing | Pharmacology | -- |
| fn | normal_bicarbonate | normal_bicarbonate() -> String | dosing | Pharmacology | -- |
| fn | normal_calcium | normal_calcium() -> String | dosing | Pharmacology | -- |
| fn | normal_albumin | normal_albumin() -> String | dosing | Pharmacology | -- |
| fn | normal_bilirubin | normal_bilirubin() -> String | dosing | Pharmacology | -- |
| fn | normal_inr | normal_inr() -> String | dosing | Pharmacology | -- |
| fn | normal_glucose | normal_glucose() -> String | dosing | Pharmacology | -- |
| fn | heparin_dvt_pe | heparin_dvt_pe(weight_kg: Float) -> HeparinProtocol | dosing | Pharmacology | -- |
| fn | heparin_acs | heparin_acs(weight_kg: Float) -> HeparinProtocol | dosing | Pharmacology | -- |
| fn | insulin_drip_dka | insulin_drip_dka(weight_kg: Float) -> Float | dosing | Pharmacology | -- |
| fn | insulin_correction | insulin_correction(current_glucose: Float, target_glucose: Float, total_daily_dose: Float) -> Float | dosing | Pharmacology | -- |
| fn | insulin_starting_dose | insulin_starting_dose(weight_kg: Float) -> Float | dosing | Pharmacology | -- |
| fn | warfarin_weekly_dose | warfarin_weekly_dose(daily_mg: Float) -> Float | dosing | Pharmacology | -- |
| fn | inr_interpretation | inr_interpretation(inr: Float, target_low: Float, target_high: Float) -> String | dosing | Pharmacology | -- |
| fn | digoxin_loading_iv | digoxin_loading_iv(lean_weight_kg: Float) -> Float | dosing | Pharmacology | -- |
| fn | digoxin_loading_po | digoxin_loading_po(lean_weight_kg: Float) -> Float | dosing | Pharmacology | -- |
| fn | digoxin_daily_loss_pct | digoxin_daily_loss_pct(crcl: Float) -> Float | dosing | Pharmacology | -- |
| fn | digoxin_maintenance | digoxin_maintenance(loading_dose_mcg: Float, crcl: Float) -> Float | dosing | Pharmacology | -- |
| fn | phenytoin_daily_dose | phenytoin_daily_dose(vmax: Float, km: Float, target_css: Float, salt_factor: Float, bioavail: Float) -> Float | dosing | Pharmacology | -- |
| fn | phenytoin_km_from_two_levels | phenytoin_km_from_two_levels(dose1: Float, css1: Float, dose2: Float, css2: Float) -> Float | dosing | Pharmacology | -- |
| fn | phenytoin_vmax_from_two_levels | phenytoin_vmax_from_two_levels(dose1: Float, css1: Float, km: Float) -> Float | dosing | Pharmacology | -- |
| fn | theophylline_loading | theophylline_loading(target_conc: Float, current_conc: Float, weight_kg: Float) -> Float | dosing | Pharmacology | -- |
| fn | theophylline_infusion_rate | theophylline_infusion_rate(clearance_l_hr: Float, target_css: Float) -> Float | dosing | Pharmacology | -- |
| fn | theophylline_cl_nonsmoker | theophylline_cl_nonsmoker() -> Float | dosing | Pharmacology | -- |
| fn | theophylline_cl_smoker | theophylline_cl_smoker() -> Float | dosing | Pharmacology | -- |
| fn | theophylline_cl_chf | theophylline_cl_chf() -> Float | dosing | Pharmacology | -- |
| fn | theophylline_cl_cirrhosis | theophylline_cl_cirrhosis() -> Float | dosing | Pharmacology | -- |
| fn | theophylline_cl_child_1_to_9 | theophylline_cl_child_1_to_9() -> Float | dosing | Pharmacology | -- |
| fn | lithium_daily_dose | lithium_daily_dose(crcl: Float, target_css: Float) -> Float | dosing | Pharmacology | -- |
| fn | lithium_meq_to_mg_carbonate | lithium_meq_to_mg_carbonate(meq: Float) -> Float | dosing | Pharmacology | -- |
| fn | enoxaparin_treatment | enoxaparin_treatment(weight_kg: Float, crcl: Float) -> Float | dosing | Pharmacology | -- |
| fn | enoxaparin_treatment_interval | enoxaparin_treatment_interval(crcl: Float) -> Float | dosing | Pharmacology | -- |
| fn | enoxaparin_prophylaxis | enoxaparin_prophylaxis(crcl: Float) -> Float | dosing | Pharmacology | -- |
| fn | anti_xa_therapeutic_range_bid | anti_xa_therapeutic_range_bid() -> String | dosing | Pharmacology | -- |
| fn | anti_xa_therapeutic_range_qd | anti_xa_therapeutic_range_qd() -> String | dosing | Pharmacology | -- |
| fn | obesity_dosing_weight | obesity_dosing_weight(drug_class: String, ibw_kg: Float, actual_kg: Float) -> Float | dosing | Pharmacology | AMINOGLYCOSIDE, VANCOMYCIN, ENOXAPARIN, HEPARIN, FLUOROQUINOLONE, DIGOXIN, PHENYTOIN |
| fn | celsius_to_fahrenheit | celsius_to_fahrenheit(c: Float) -> Float | dosing | Pharmacology | -- |
| fn | fahrenheit_to_celsius | fahrenheit_to_celsius(f: Float) -> Float | dosing | Pharmacology | -- |
| fn | lbs_to_kg | lbs_to_kg(lbs: Float) -> Float | dosing | Pharmacology | -- |
| fn | kg_to_lbs | kg_to_lbs(kg: Float) -> Float | dosing | Pharmacology | -- |
| fn | inches_to_cm | inches_to_cm(inches: Float) -> Float | dosing | Pharmacology | -- |
| fn | cm_to_inches | cm_to_inches(cm: Float) -> Float | dosing | Pharmacology | -- |
| fn | feet_inches_to_inches | feet_inches_to_inches(feet: Float, inches: Float) -> Float | dosing | Pharmacology | -- |
| fn | glucose_mg_to_mmol | glucose_mg_to_mmol(mg_dl: Float) -> Float | dosing | Pharmacology | -- |
| fn | glucose_mmol_to_mg | glucose_mmol_to_mg(mmol_l: Float) -> Float | dosing | Pharmacology | -- |
| fn | creatinine_mg_to_umol | creatinine_mg_to_umol(mg_dl: Float) -> Float | dosing | Pharmacology | -- |
| fn | creatinine_umol_to_mg | creatinine_umol_to_mg(umol_l: Float) -> Float | dosing | Pharmacology | -- |
| fn | bilirubin_mg_to_umol | bilirubin_mg_to_umol(mg_dl: Float) -> Float | dosing | Pharmacology | -- |
| fn | calcium_mg_to_mmol | calcium_mg_to_mmol(mg_dl: Float) -> Float | dosing | Pharmacology | -- |
| fn | meq_equals_mmol_monovalent | meq_equals_mmol_monovalent() -> String | dosing | Pharmacology | -- |
| fn | dosing_function_count | dosing_function_count() -> Int | dosing | Pharmacology | -- |
| struct | GentamicinDose | struct { dose_mg: Float, interval_hours: Float, notes: String } | dosing | Pharmacology | -- |
| struct | HeparinProtocol | struct { bolus_units: Float, infusion_units_hr: Float, notes: String } | dosing | Pharmacology | -- |
| fn | dose_response_sigmoid | dose_response_sigmoid(dose: Float, emax: Float, ec50: Float, hill_n: Float) -> Float | toxicology | Pharmacology | -- |
| fn | therapeutic_index | therapeutic_index(ld50: Float, ed50: Float) -> Float | toxicology | Pharmacology | -- |
| fn | margin_of_safety | margin_of_safety(ld01: Float, ed99: Float) -> Float | toxicology | Pharmacology | -- |
| fn | noael_to_human_dose | noael_to_human_dose(noael_mg_kg: Float, animal_weight_kg: Float, human_weight_kg: Float) -> Float | toxicology | Pharmacology | -- |
| fn | dose_response_log_linear | dose_response_log_linear(log_dose: Float, slope: Float, intercept: Float) -> Float | toxicology | Pharmacology | -- |
| fn | certain_safety_factor | certain_safety_factor(ed99: Float, ld01: Float) -> Float | toxicology | Pharmacology | -- |
| fn | om | om(org: String, bio: String, nl: Float, nh: Float, u: String, tt: Float, mech: String, drugs: String, cite: String) -> OrganMarker | toxicology | Pharmacology | -- |
| fn | hepatotoxicity | hepatotoxicity(marker: String) -> OrganMarker | toxicology | Pharmacology | ALT, AST, ALP, GGT, BILIRUBIN, INR |
| fn | hys_law | hys_law(alt: Float, alt_uln: Float, bilirubin: Float, bili_uln: Float, alp: Float, alp_uln: Float) -> String | toxicology | Pharmacology | -- |
| fn | nephrotoxicity | nephrotoxicity(marker: String) -> OrganMarker | toxicology | Pharmacology | BUN, CREATININE, GFR, CYSTATIN_C, KIM1, NGAL |
| fn | cardiotoxicity | cardiotoxicity(marker: String) -> OrganMarker | toxicology | Pharmacology | TROPONIN_I, TROPONIN_T, BNP, NT_PROBNP, QTC |
| fn | neurotoxicity | neurotoxicity(marker: String) -> OrganMarker | toxicology | Pharmacology | MENTAL_STATUS, SEIZURE_THRESHOLD, NSE, S100B |
| fn | hematotoxicity | hematotoxicity(marker: String) -> OrganMarker | toxicology | Pharmacology | WBC, ANC, PLATELETS, HEMOGLOBIN, RETICULOCYTES |
| fn | qtc_bazett | qtc_bazett(qt_ms: Float, rr_ms: Float) -> Float | toxicology | Pharmacology | -- |
| fn | qtc_fridericia | qtc_fridericia(qt_ms: Float, rr_ms: Float) -> Float | toxicology | Pharmacology | -- |
| fn | qt_risk_assessment | qt_risk_assessment(qtc: Float) -> String | toxicology | Pharmacology | -- |
| fn | qt_drug | qt_drug(name: String) -> QTDrug | toxicology | Pharmacology | AMIODARONE, SOTALOL, HALOPERIDOL, METHADONE, ONDANSETRON, ERYTHROMYCIN, FLUOROQUINOLONES, DROPERIDOL, THIORIDAZINE, CHLOROQUINE |
| fn | toxidrome | toxidrome(name: String) -> Toxidrome | toxicology | Pharmacology | ANTICHOLINERGIC, CHOLINERGIC, SYMPATHOMIMETIC, OPIOID, SEDATIVE_HYPNOTIC, SEROTONIN_SYNDROME, NMS |
| fn | antidote | antidote(poison: String) -> AntidoteEntry | toxicology | Pharmacology | ACETAMINOPHEN, OPIOID, BENZODIAZEPINE, ORGANOPHOSPHATE, DIGOXIN, WARFARIN, METHANOL, ETHYLENE_GLYCOL, IRON, CYANIDE, ... (+3) |
| fn | rucam_score | rucam_score(time_to_onset: Int, course_after_cessation: Int, risk_factors: Int, concomitant_drugs: Int, exclusion_of_other_causes: Int, previous_info_on_drug: Int, rechallenge: Int) -> String | toxicology | Pharmacology | -- |
| fn | dili_pattern | dili_pattern(alt: Float, alt_uln: Float, alp: Float, alp_uln: Float) -> String | toxicology | Pharmacology | -- |
| fn | rumack_matthew | rumack_matthew(apap_level: Float, hours_post_ingestion: Float) -> String | toxicology | Pharmacology | -- |
| fn | nac_protocol | nac_protocol(weight_kg: Float) -> NACProtocol | toxicology | Pharmacology | -- |
| fn | apap_toxic_dose | apap_toxic_dose(weight_kg: Float) -> String | toxicology | Pharmacology | -- |
| fn | napqi_pathway | napqi_pathway() -> String | toxicology | Pharmacology | -- |
| fn | hr_to_rr | hr_to_rr(heart_rate_bpm: Float) -> Float | toxicology | Pharmacology | -- |
| fn | body_surface_area | body_surface_area(height_cm: Float, weight_kg: Float) -> Float | toxicology | Pharmacology | -- |
| fn | anion_gap | anion_gap(sodium: Float, chloride: Float, bicarbonate: Float) -> Float | toxicology | Pharmacology | -- |
| fn | osmol_gap | osmol_gap(measured_osm: Float, sodium: Float, bun: Float, glucose: Float, ethanol: Float) -> Float | toxicology | Pharmacology | -- |
| fn | sat_gap | sat_gap(spo2: Float, sao2: Float) -> String | toxicology | Pharmacology | -- |
| fn | toxicity_rating | toxicity_rating(ld50_mg_kg: Float) -> String | toxicology | Pharmacology | -- |
| fn | decontamination | decontamination(hours_since_ingestion: Float, substance_type: String) -> String | toxicology | Pharmacology | SUSTAINED_RELEASE, PACKET |
| fn | toxicology_function_count | toxicology_function_count() -> Int | toxicology | Pharmacology | -- |
| fn | toxicology_struct_count | toxicology_struct_count() -> Int | toxicology | Pharmacology | -- |
| fn | toxicology_marker_count | toxicology_marker_count() -> Int | toxicology | Pharmacology | -- |
| fn | toxicology_toxidrome_count | toxicology_toxidrome_count() -> Int | toxicology | Pharmacology | -- |
| fn | toxicology_antidote_count | toxicology_antidote_count() -> Int | toxicology | Pharmacology | -- |
| fn | toxicology_qt_drug_count | toxicology_qt_drug_count() -> Int | toxicology | Pharmacology | -- |
| struct | OrganMarker | struct { organ: String, biomarker: String, normal_low: Float, normal_high: Float, unit: String, toxic_threshold: Float, mechanism: String, common_drugs: String, citation: String } | toxicology | Pharmacology | -- |
| struct | Toxidrome | struct { name: String, vital_signs: String, pupils: String, skin: String, mental_status: String, other_findings: String, treatment: String, prototype_drugs: String, citation: String } | toxicology | Pharmacology | -- |
| struct | AntidoteEntry | struct { poison: String, antidote: String, mechanism_of_antidote: String, dosing: String, time_window: String, monitoring: String, citation: String } | toxicology | Pharmacology | -- |
| struct | NACProtocol | struct { weight_kg: Float, bag_one_dose_mg: Float, bag_one_volume_ml: Float, bag_one_duration_min: Float, bag_two_dose_mg: Float, bag_two_volume_ml: Float, bag_two_duration_min: Float, bag_three_dose_mg: Float, bag_three_volume_ml: Float, bag_three_duration_min: Float, total_dose_mg: Float, total_duration_hours: Float, citation: String } | toxicology | Pharmacology | -- |
| struct | QTDrug | struct { name: String, risk_category: String, typical_qtc_prolongation_ms: Float, mechanism: String, citation: String } | toxicology | Pharmacology | -- |
| fn | lab | lab(tn: String, u: String, nl: Float, nh: Float, cl: Float, ch: Float, cs: String, ci: String) -> LabTest | clinical_labs | Pharmacology | -- |
| fn | pattern | pattern(pn: String, cat: String, cr: String, interp: String, diff: String, ci: String) -> LabPattern | clinical_labs | Pharmacology | -- |
| fn | ua_component | ua_component(cn: String, nv: String, ab: String, meth: String, ci: String) -> UrinalysisComponent | clinical_labs | Pharmacology | -- |
| fn | calc | calc(cn: String, f: String, nr: String, interp: String, lim: String, ci: String) -> LabCalculation | clinical_labs | Pharmacology | -- |
| fn | lookup_cbc | lookup_cbc(test: String) -> LabTest | clinical_labs | Pharmacology | WBC, RBC_male, RBC_female, hemoglobin_male, hemoglobin_female, hematocrit_male, hematocrit_female, MCV, MCH, MCHC, ... (+3) |
| fn | lookup_wbc_differential | lookup_wbc_differential(cell: String) -> LabTest | clinical_labs | Pharmacology | neutrophils, lymphocytes, monocytes, eosinophils, basophils, bands |
| fn | calculate_anc | calculate_anc(wbc: Float, segs_pct: Float, bands_pct: Float) -> Float | clinical_labs | Pharmacology | -- |
| fn | classify_anc | classify_anc(anc: Float) -> String | clinical_labs | Pharmacology | -- |
| fn | reticulocyte_maturation_factor | reticulocyte_maturation_factor(hct: Float) -> Float | clinical_labs | Pharmacology | -- |
| fn | calculate_rpi | calculate_rpi(retic_pct: Float, patient_hct: Float, normal_hct: Float) -> Float | clinical_labs | Pharmacology | -- |
| fn | classify_rpi | classify_rpi(rpi: Float) -> String | clinical_labs | Pharmacology | -- |
| fn | cbc_test_count | cbc_test_count() -> Int | clinical_labs | Pharmacology | -- |
| fn | wbc_differential_count | wbc_differential_count() -> Int | clinical_labs | Pharmacology | -- |
| fn | lookup_cmp | lookup_cmp(test: String) -> LabTest | clinical_labs | Pharmacology | glucose, BUN, creatinine, sodium, potassium, chloride, CO2, calcium, total_protein, albumin, ... (+4) |
| fn | cmp_test_count | cmp_test_count() -> Int | clinical_labs | Pharmacology | -- |
| fn | calculate_anion_gap | calculate_anion_gap(na: Float, cl: Float, hco3: Float) -> Float | clinical_labs | Pharmacology | -- |
| fn | classify_anion_gap | classify_anion_gap(ag: Float) -> String | clinical_labs | Pharmacology | -- |
| fn | calculate_corrected_calcium | calculate_corrected_calcium(measured_ca: Float, albumin: Float) -> Float | clinical_labs | Pharmacology | -- |
| fn | calculate_bun_creatinine_ratio | calculate_bun_creatinine_ratio(bun: Float, creatinine: Float) -> Float | clinical_labs | Pharmacology | -- |
| fn | classify_bun_creatinine_ratio | classify_bun_creatinine_ratio(ratio: Float) -> String | clinical_labs | Pharmacology | -- |
| fn | calculate_cockcroft_gault | calculate_cockcroft_gault(age: Float, weight_kg: Float, creatinine: Float, is_female: Bool) -> Float | clinical_labs | Pharmacology | -- |
| fn | classify_gfr | classify_gfr(gfr: Float) -> String | clinical_labs | Pharmacology | -- |
| fn | calculate_serum_osmolality | calculate_serum_osmolality(na: Float, glucose: Float, bun: Float) -> Float | clinical_labs | Pharmacology | -- |
| fn | classify_osmolality | classify_osmolality(osm: Float) -> String | clinical_labs | Pharmacology | -- |
| fn | lookup_lft_pattern | lookup_lft_pattern(name: String) -> LabPattern | clinical_labs | Pharmacology | hepatocellular, cholestatic, alcoholic, mixed |
| fn | calculate_r_factor | calculate_r_factor(alt: Float, alt_uln: Float, alp: Float, alp_uln: Float) -> Float | clinical_labs | Pharmacology | -- |
| fn | classify_r_factor | classify_r_factor(r: Float) -> String | clinical_labs | Pharmacology | -- |
| fn | classify_meld | classify_meld(meld: Float) -> String | clinical_labs | Pharmacology | -- |
| fn | lft_pattern_count | lft_pattern_count() -> Int | clinical_labs | Pharmacology | -- |
| fn | lookup_coagulation | lookup_coagulation(test: String) -> LabTest | clinical_labs | Pharmacology | PT, INR, PTT, fibrinogen, d_dimer, thrombin_time |
| fn | coagulation_test_count | coagulation_test_count() -> Int | clinical_labs | Pharmacology | -- |
| fn | lookup_dic_criteria | lookup_dic_criteria(component: String) -> LabPattern | clinical_labs | Pharmacology | platelets, PT, fibrinogen, d_dimer, schistocytes |
| fn | dic_criteria_count | dic_criteria_count() -> Int | clinical_labs | Pharmacology | -- |
| fn | lookup_thyroid | lookup_thyroid(test: String) -> LabTest | clinical_labs | Pharmacology | TSH, free_T4, free_T3, total_T4, total_T3 |
| fn | thyroid_test_count | thyroid_test_count() -> Int | clinical_labs | Pharmacology | -- |
| fn | lookup_thyroid_pattern | lookup_thyroid_pattern(name: String) -> LabPattern | clinical_labs | Pharmacology | primary_hypothyroid, subclinical_hypothyroid, primary_hyperthyroid, subclinical_hyperthyroid, T3_thyrotoxicosis, sick_euthyroid, central_hypothyroid |
| fn | thyroid_pattern_count | thyroid_pattern_count() -> Int | clinical_labs | Pharmacology | -- |
| fn | lookup_cardiac | lookup_cardiac(test: String) -> LabTest | clinical_labs | Pharmacology | troponin_I, troponin_T_hs, BNP, NT_proBNP, CK_MB, LDH |
| fn | cardiac_test_count | cardiac_test_count() -> Int | clinical_labs | Pharmacology | -- |
| fn | lookup_cardiac_pattern | lookup_cardiac_pattern(name: String) -> LabPattern | clinical_labs | Pharmacology | STEMI, NSTEMI, HF_by_BNP |
| fn | cardiac_pattern_count | cardiac_pattern_count() -> Int | clinical_labs | Pharmacology | -- |
| fn | lookup_lipid | lookup_lipid(test: String) -> LabTest | clinical_labs | Pharmacology | total_cholesterol, LDL, HDL_male, HDL_female, triglycerides, VLDL |
| fn | lipid_test_count | lipid_test_count() -> Int | clinical_labs | Pharmacology | -- |
| fn | calculate_friedewald_ldl | calculate_friedewald_ldl(total_chol: Float, hdl: Float, trig: Float) -> Float | clinical_labs | Pharmacology | -- |
| fn | friedewald_valid | friedewald_valid(trig: Float) -> Bool | clinical_labs | Pharmacology | -- |
| fn | calculate_non_hdl | calculate_non_hdl(total_chol: Float, hdl: Float) -> Float | clinical_labs | Pharmacology | -- |
| fn | calculate_tc_hdl_ratio | calculate_tc_hdl_ratio(total_chol: Float, hdl: Float) -> Float | clinical_labs | Pharmacology | -- |
| fn | classify_tc_hdl_ratio | classify_tc_hdl_ratio(ratio: Float) -> String | clinical_labs | Pharmacology | -- |
| fn | classify_ldl | classify_ldl(ldl: Float) -> String | clinical_labs | Pharmacology | -- |
| fn | lookup_hba1c | lookup_hba1c(test: String) -> LabTest | clinical_labs | Pharmacology | HbA1c |
| fn | calculate_eag | calculate_eag(a1c: Float) -> Float | clinical_labs | Pharmacology | -- |
| fn | classify_a1c | classify_a1c(a1c: Float) -> String | clinical_labs | Pharmacology | -- |
| fn | a1c_to_eag_reference | a1c_to_eag_reference(a1c_pct: Float) -> Float | clinical_labs | Pharmacology | -- |
| fn | lookup_urinalysis | lookup_urinalysis(component: String) -> UrinalysisComponent | clinical_labs | Pharmacology | pH, specific_gravity, protein, glucose, ketones, blood, bilirubin, urobilinogen, nitrites, leukocyte_esterase, ... (+4) |
| fn | urinalysis_component_count | urinalysis_component_count() -> Int | clinical_labs | Pharmacology | -- |
| fn | lookup_iron_study | lookup_iron_study(test: String) -> LabTest | clinical_labs | Pharmacology | serum_iron, TIBC, ferritin_male, ferritin_female, transferrin_sat |
| fn | iron_study_count | iron_study_count() -> Int | clinical_labs | Pharmacology | -- |
| fn | lookup_iron_pattern | lookup_iron_pattern(name: String) -> LabPattern | clinical_labs | Pharmacology | iron_deficiency, anemia_chronic_disease, hemochromatosis, sideroblastic |
| fn | iron_pattern_count | iron_pattern_count() -> Int | clinical_labs | Pharmacology | -- |
| fn | calculate_transferrin_saturation | calculate_transferrin_saturation(serum_iron: Float, tibc: Float) -> Float | clinical_labs | Pharmacology | -- |
| fn | lookup_lab_calculation | lookup_lab_calculation(name: String) -> LabCalculation | clinical_labs | Pharmacology | anion_gap, corrected_calcium, bun_creatinine_ratio, friedewald_ldl, eag, cockcroft_gault, anc, r_factor, transferrin_sat, osmolality |
| fn | lab_calculation_count | lab_calculation_count() -> Int | clinical_labs | Pharmacology | -- |
| fn | total_lab_test_count | total_lab_test_count() -> Int | clinical_labs | Pharmacology | -- |
| fn | total_pattern_count | total_pattern_count() -> Int | clinical_labs | Pharmacology | -- |
| fn | total_urinalysis_count | total_urinalysis_count() -> Int | clinical_labs | Pharmacology | -- |
| fn | total_calculation_count | total_calculation_count() -> Int | clinical_labs | Pharmacology | -- |
| struct | LabTest | struct { test_name: String, units: String, normal_low: Float, normal_high: Float, critical_low: Float, critical_high: Float, clinical_significance: String, citation: String } | clinical_labs | Pharmacology | -- |
| struct | LabPattern | struct { pattern_name: String, category: String, criteria: String, interpretation: String, differential: String, citation: String } | clinical_labs | Pharmacology | -- |
| struct | UrinalysisComponent | struct { component_name: String, normal_value: String, abnormal_significance: String, method: String, citation: String } | clinical_labs | Pharmacology | -- |
| struct | LabCalculation | struct { calc_name: String, formula: String, normal_range: String, interpretation: String, limitations: String, citation: String } | clinical_labs | Pharmacology | -- |
| fn | rentry | rentry(n: String, sf: String, gp: String, m: String, el: String, ti: String, cd: String, ci: String) -> ReceptorEntry | receptor_pharmacology | Pharmacology | -- |
| fn | drpair | drpair(dn: String, r: String, at: String, cu: String, ci: String) -> DrugReceptorPair | receptor_pharmacology | Pharmacology | -- |
| fn | scentry | scentry(n: String, p: String, ci: String) -> SignalCascadeEntry | receptor_pharmacology | Pharmacology | -- |
| fn | unknown_receptor | unknown_receptor() -> ReceptorEntry | receptor_pharmacology | Pharmacology | -- |
| fn | unknown_drug_receptor | unknown_drug_receptor() -> DrugReceptorPair | receptor_pharmacology | Pharmacology | -- |
| fn | receptor | receptor(name: String) -> ReceptorEntry | receptor_pharmacology | Pharmacology | beta1, beta2, D1, H2, V2, 5HT4, alpha2, D2, mu_opioid, delta_opioid, ... (+25) |
| fn | dose_response | dose_response(dose: Float, emax: Float, ec50: Float, hill_n: Float) -> Float | receptor_pharmacology | Pharmacology | -- |
| fn | receptor_occupancy | receptor_occupancy(conc: Float, kd: Float) -> Float | receptor_pharmacology | Pharmacology | -- |
| fn | ic50_to_ki | ic50_to_ki(ic50: Float, ligand_conc: Float, kd: Float) -> Float | receptor_pharmacology | Pharmacology | -- |
| fn | selectivity_ratio | selectivity_ratio(ki_target: Float, ki_off_target: Float) -> Float | receptor_pharmacology | Pharmacology | -- |
| fn | therapeutic_window | therapeutic_window(ec50: Float, toxic_conc: Float) -> Float | receptor_pharmacology | Pharmacology | -- |
| fn | potency_comparison | potency_comparison(ec50_a: Float, ec50_b: Float) -> Float | receptor_pharmacology | Pharmacology | -- |
| fn | schild_dose_ratio | schild_dose_ratio(antagonist_conc: Float, kb: Float) -> Float | receptor_pharmacology | Pharmacology | -- |
| fn | signal_cascade | signal_cascade(name: String) -> SignalCascadeEntry | receptor_pharmacology | Pharmacology | gs, gi, gq, rtk_mapk, jak_stat, nuclear_receptor |
| fn | drug_receptor | drug_receptor(drug_name: String) -> DrugReceptorPair | receptor_pharmacology | Pharmacology | METOPROLOL, ALBUTEROL, MORPHINE, NALOXONE, BUPRENORPHINE, LOSARTAN, SERTRALINE, DIAZEPAM, HALOPERIDOL, ARIPIPRAZOLE, ... (+20) |
| fn | receptor_count | receptor_count() -> Int | receptor_pharmacology | Pharmacology | -- |
| fn | drug_receptor_pair_count | drug_receptor_pair_count() -> Int | receptor_pharmacology | Pharmacology | -- |
| fn | signal_cascade_count | signal_cascade_count() -> Int | receptor_pharmacology | Pharmacology | -- |
| struct | ReceptorEntry | struct { name: String, superfamily: String, g_protein: String, mechanism: String, endogenous_ligand: String, tissue: String, clinical_drugs: String, citation: String } | receptor_pharmacology | Pharmacology | -- |
| struct | DrugReceptorPair | struct { drug_name: String, receptor: String, action_type: String, clinical_use: String, citation: String } | receptor_pharmacology | Pharmacology | -- |
| struct | SignalCascadeEntry | struct { name: String, pathway: String, citation: String } | receptor_pharmacology | Pharmacology | -- |
| fn | liver_blood_flow | liver_blood_flow() -> Float | organ_models | Pharmacology | -- |
| fn | hepatic_extraction | hepatic_extraction(cl_intrinsic: Float, blood_flow: Float, fu: Float) -> Float | organ_models | Pharmacology | -- |
| fn | first_pass_bioavailability | first_pass_bioavailability(extraction: Float) -> Float | organ_models | Pharmacology | -- |
| fn | cyp_expression_liver | cyp_expression_liver(enzyme: String) -> String | organ_models | Pharmacology | CYP3A4, CYP2C9, CYP1A2, CYP2E1, CYP2D6, CYP2C19, CYP2B6 |
| fn | liver_zone | liver_zone(zone: Int) -> String | organ_models | Pharmacology | -- |
| fn | alt_half_life_hours | alt_half_life_hours() -> Float | organ_models | Pharmacology | -- |
| fn | renal_blood_flow | renal_blood_flow() -> Float | organ_models | Pharmacology | -- |
| fn | gfr_normal | gfr_normal() -> Float | organ_models | Pharmacology | -- |
| fn | tubular_transporter | tubular_transporter(name: String) -> String | organ_models | Pharmacology | OAT1, OAT3, OCT2, MATE1, Pgp, MRP2 |
| fn | ion_trapping_reabsorbed | ion_trapping_reabsorbed(pka: Float, urine_ph: Float, is_weak_acid: Bool) -> Bool | organ_models | Pharmacology | -- |
| fn | nephrotoxic_drug | nephrotoxic_drug(name: String) -> String | organ_models | Pharmacology | aminoglycosides, vancomycin, cisplatin, NSAIDs, contrast_dye, lithium, methotrexate, acyclovir |
| fn | drug_dialyzable | drug_dialyzable(mw: Float, protein_binding_pct: Float, vd_l_kg: Float) -> Bool | organ_models | Pharmacology | -- |
| fn | cardiac_output | cardiac_output() -> Float | organ_models | Pharmacology | -- |
| fn | qt_drug_risk | qt_drug_risk(drug: String) -> String | organ_models | Pharmacology | AMIODARONE, SOTALOL, HALOPERIDOL, METHADONE, ERYTHROMYCIN, CIPROFLOXACIN, MOXIFLOXACIN, ONDANSETRON, CITALOPRAM, QUETIAPINE |
| fn | ef_classification | ef_classification(ef_pct: Float) -> String | organ_models | Pharmacology | -- |
| fn | bbb_permeable | bbb_permeable(log_p: Float, mw: Float, hbd: Int, psa: Float) -> Bool | organ_models | Pharmacology | -- |
| fn | pgp_substrate_bbb | pgp_substrate_bbb(drug: String) -> Bool | organ_models | Pharmacology | LOPERAMIDE, DIGOXIN, CYCLOSPORINE, TACROLIMUS, RITONAVIR, INDINAVIR, SAQUINAVIR, DOXORUBICIN, VINBLASTINE, COLCHICINE, ... (+1) |
| fn | circumventricular_organ | circumventricular_organ(name: String) -> String | organ_models | Pharmacology | area_postrema, median_eminence, neurohypophysis, pineal, SFO, OVLT |
| fn | pulmonary_blood_flow | pulmonary_blood_flow() -> Float | organ_models | Pharmacology | -- |
| fn | inhaled_deposition | inhaled_deposition(particle_size_um: Float) -> String | organ_models | Pharmacology | -- |
| fn | first_pass_pulmonary | first_pass_pulmonary(drug: String) -> String | organ_models | Pharmacology | FENTANYL, PROPRANOLOL, LIDOCAINE, NOREPINEPHRINE |
| fn | gi_ph | gi_ph(region: String) -> Float | organ_models | Pharmacology | stomach, duodenum, jejunum, ileum, colon, rectum |
| fn | drug_absorption_site | drug_absorption_site(pka: Float, is_weak_acid: Bool) -> String | organ_models | Pharmacology | -- |
| fn | cyp3a4_gut_description | cyp3a4_gut_description() -> String | organ_models | Pharmacology | -- |
| fn | placental_transfer_likely | placental_transfer_likely(mw: Float, protein_binding_pct: Float, is_lipophilic: Bool) -> Bool | organ_models | Pharmacology | -- |
| fn | teratogenic_drug | teratogenic_drug(drug: String) -> String | organ_models | Pharmacology | THALIDOMIDE, ISOTRETINOIN, WARFARIN, VALPROIC_ACID, METHOTREXATE, ACE_INHIBITORS, PHENYTOIN, LITHIUM, DIETHYLSTILBESTROL |
| fn | organ_model_count | organ_model_count() -> Int | organ_models | Pharmacology | -- |
| fn | organ_function_count | organ_function_count() -> Int | organ_models | Pharmacology | -- |
| fn | typical_value | typical_value(theta: Float, cov_effect: Float) -> Float | population_pk | Pharmacology | -- |
| fn | individual_parameter | individual_parameter(tv: Float, eta: Float) -> Float | population_pk | Pharmacology | -- |
| fn | residual_proportional | residual_proportional(predicted: Float, epsilon: Float) -> Float | population_pk | Pharmacology | -- |
| fn | residual_additive | residual_additive(predicted: Float, epsilon: Float) -> Float | population_pk | Pharmacology | -- |
| fn | residual_combined | residual_combined(predicted: Float, eps_prop: Float, eps_add: Float) -> Float | population_pk | Pharmacology | -- |
| fn | residual_exponential | residual_exponential(predicted: Float, epsilon: Float) -> Float | population_pk | Pharmacology | -- |
| fn | weight_allometric_cl | weight_allometric_cl(cl_ref: Float, weight_kg: Float) -> Float | population_pk | Pharmacology | -- |
| fn | weight_allometric_vd | weight_allometric_vd(vd_ref: Float, weight_kg: Float) -> Float | population_pk | Pharmacology | -- |
| fn | age_maturation | age_maturation(pma_weeks: Float, tm50: Float, hill: Float) -> Float | population_pk | Pharmacology | -- |
| fn | renal_covariate | renal_covariate(cl_ref: Float, crcl: Float) -> Float | population_pk | Pharmacology | -- |
| fn | renal_covariate_mixed | renal_covariate_mixed(cl_nonrenal: Float, cl_renal_ref: Float, crcl: Float) -> Float | population_pk | Pharmacology | -- |
| fn | cyp2d6_phenotype | cyp2d6_phenotype(phenotype: String) -> Float | population_pk | Pharmacology | poor, intermediate, extensive, ultrarapid |
| fn | cyp2c19_phenotype | cyp2c19_phenotype(phenotype: String) -> Float | population_pk | Pharmacology | poor, intermediate, extensive, ultrarapid |
| fn | cyp3a_activity | cyp3a_activity(phenotype: String) -> Float | population_pk | Pharmacology | inhibited, normal, induced |
| fn | bsa_covariate | bsa_covariate(param_ref: Float, bsa: Float) -> Float | population_pk | Pharmacology | -- |
| fn | sex_effect | sex_effect(param_ref: Float, is_female: Bool, female_factor: Float) -> Float | population_pk | Pharmacology | -- |
| fn | power_covariate | power_covariate(theta: Float, covariate: Float, reference: Float, exponent: Float) -> Float | population_pk | Pharmacology | -- |
| fn | iiv_cv_from_omega | iiv_cv_from_omega(omega_sq: Float) -> Float | population_pk | Pharmacology | -- |
| fn | iiv_omega_from_cv | iiv_omega_from_cv(cv_pct: Float) -> Float | population_pk | Pharmacology | -- |
| fn | shrinkage | shrinkage(omega_sq: Float, se_eta_sq: Float) -> Float | population_pk | Pharmacology | -- |
| fn | cv_percent | cv_percent(sd: Float, mean_val: Float) -> Float | population_pk | Pharmacology | -- |
| fn | rse_percent | rse_percent(se: Float, estimate: Float) -> Float | population_pk | Pharmacology | -- |
| fn | auc_ratio | auc_ratio(auc_test: Float, auc_ref: Float) -> Float | population_pk | Pharmacology | -- |
| fn | cmax_ratio | cmax_ratio(cmax_test: Float, cmax_ref: Float) -> Float | population_pk | Pharmacology | -- |
| fn | be_pass | be_pass(lower_ci: Float, upper_ci: Float) -> Bool | population_pk | Pharmacology | -- |
| fn | be_pass_nti | be_pass_nti(lower_ci: Float, upper_ci: Float) -> Bool | population_pk | Pharmacology | -- |
| fn | be_assess | be_assess(gmr: Float, lower_ci: Float, upper_ci: Float) -> String | population_pk | Pharmacology | -- |
| fn | pediatric_cl | pediatric_cl(adult_cl: Float, weight_kg: Float, pma_weeks: Float, tm50: Float, hill: Float) -> Float | population_pk | Pharmacology | -- |
| fn | pediatric_cl_simple | pediatric_cl_simple(adult_cl: Float, age_years: Float) -> Float | population_pk | Pharmacology | -- |
| fn | neonatal_cl_fraction | neonatal_cl_fraction(postnatal_days: Float) -> Float | population_pk | Pharmacology | -- |
| fn | geriatric_cl | geriatric_cl(adult_cl: Float, age: Float) -> Float | population_pk | Pharmacology | -- |
| fn | hepatic_scaling | hepatic_scaling(cl_ref: Float, child_pugh_class: String) -> Float | population_pk | Pharmacology | A, B, C |
| fn | obesity_dosing_weight | obesity_dosing_weight(drug_class: String) -> String | population_pk | Pharmacology | aminoglycosides, vancomycin, fluoroquinolones, beta_lactams, heparin |
| fn | pregnancy_pk_changes | pregnancy_pk_changes() -> String | population_pk | Pharmacology | -- |
| fn | box_muller | box_muller(u1: Float, u2: Float) -> Float | population_pk | Pharmacology | -- |
| fn | log_normal_sample | log_normal_sample(mean_val: Float, omega_sq: Float, z: Float) -> Float | population_pk | Pharmacology | -- |
| fn | prediction_interval_lower | prediction_interval_lower(mean_val: Float, omega_sq: Float) -> Float | population_pk | Pharmacology | -- |
| fn | prediction_interval_upper | prediction_interval_upper(mean_val: Float, omega_sq: Float) -> Float | population_pk | Pharmacology | -- |
| fn | geometric_mean_2 | geometric_mean_2(a: Float, b: Float) -> Float | population_pk | Pharmacology | -- |
| fn | geometric_cv | geometric_cv(omega_sq: Float) -> Float | population_pk | Pharmacology | -- |
| fn | aic | aic(neg2ll: Float, n_params: Float) -> Float | population_pk | Pharmacology | -- |
| fn | bic | bic(neg2ll: Float, n_params: Float, n_obs: Float) -> Float | population_pk | Pharmacology | -- |
| fn | lrt_significant_p05 | lrt_significant_p05(delta_ofv: Float, df: Int) -> Bool | population_pk | Pharmacology | -- |
| fn | structural_model | structural_model(name: String) -> String | population_pk | Pharmacology | one_compartment, two_compartment, three_compartment |
| fn | absorption_model | absorption_model(name: String) -> String | population_pk | Pharmacology | first_order, zero_order, transit |
| fn | popPK_function_count | popPK_function_count() -> Int | population_pk | Pharmacology | -- |
| fn | casvar | casvar(n: String, o: String, p: String, ct: String, tt: String, sa: Int, dc: String, cs: String, ci: String) -> CasVariant | crispr | Gene Editing | -- |
| fn | grule | grule(rn: String, d: String, ov: String, ci: String) -> GuideRNARule | crispr | Gene Editing | -- |
| fn | dmethod | dmethod(n: String, me: String, pl: String, ad: String, li: String, cu: String, ci: String) -> DeliveryMethod | crispr | Gene Editing | -- |
| fn | ctrial | ctrial(n: String, tn: String, tg: String, cs: String, ind: String, sp: String, ap: String, me: String, ci: String) -> ClinicalTrial | crispr | Gene Editing | -- |
| fn | rpathway | rpathway(p: String, fn_name: String, me: String, fi: String, ef: String, cc: String, kp: String, ap: String, ci: String) -> RepairPathway | crispr | Gene Editing | -- |
| fn | otresult | otresult(s: Float, i: String) -> OffTargetResult | crispr | Gene Editing | -- |
| fn | otfeature | otfeature(fn_val: String, po: String, pr: String, ef: String, ci: String) -> OnTargetFeature | crispr | Gene Editing | -- |
| fn | cas_variant | cas_variant(name: String) -> CasVariant | crispr | Gene Editing | SpCas9, Cas9_D10A, Cas9_H840A, SaCas9, Cas12a, Cas12b, Cas13a, Cas13d, CBE, ABE, ... (+1) |
| fn | cas_variant_count | cas_variant_count() -> Int | crispr | Gene Editing | -- |
| fn | grna_design_rule | grna_design_rule(rule: String) -> GuideRNARule | crispr | Gene Editing | gc_content, avoid_tttt, spacer_length, seed_region, no_homopolymers, position_20_g, position_1 |
| fn | grna_design_rule_count | grna_design_rule_count() -> Int | crispr | Gene Editing | -- |
| fn | off_target_score | off_target_score(mismatches: Int, pam_proximal_mismatches: Int) -> OffTargetResult | crispr | Gene Editing | -- |
| fn | on_target_feature | on_target_feature(feature: String) -> OnTargetFeature | crispr | Gene Editing | pos20_G, pos16_not_G, pos3_not_C, gc_window, dinuc_GG_20, pos1_G, central_GC, pos2_not_T |
| fn | on_target_feature_count | on_target_feature_count() -> Int | crispr | Gene Editing | -- |
| fn | delivery_method | delivery_method(name: String) -> DeliveryMethod | crispr | Gene Editing | AAV, LNP, electroporation, RNP |
| fn | delivery_method_count | delivery_method_count() -> Int | crispr | Gene Editing | -- |
| fn | clinical_trial | clinical_trial(name: String) -> ClinicalTrial | crispr | Gene Editing | casgevy_scd, casgevy_thal, ntla2001, ntla2002, cart_crispr, verve101 |
| fn | clinical_trial_count | clinical_trial_count() -> Int | crispr | Gene Editing | -- |
| fn | dna_repair | dna_repair(pathway: String) -> RepairPathway | crispr | Gene Editing | NHEJ, HDR, MMEJ |
| fn | dna_repair_count | dna_repair_count() -> Int | crispr | Gene Editing | -- |
| fn | is_dna_targeting | is_dna_targeting(name: String) -> Bool | crispr | Gene Editing | -- |
| fn | is_rna_targeting | is_rna_targeting(name: String) -> Bool | crispr | Gene Editing | -- |
| fn | is_dsb_free | is_dsb_free(name: String) -> Bool | crispr | Gene Editing | CBE, ABE, PE |
| fn | fits_aav | fits_aav(name: String) -> Bool | crispr | Gene Editing | SaCas9, Cas13d |
| fn | pam_for | pam_for(name: String) -> String | crispr | Gene Editing | -- |
| fn | nobel_prize_year | nobel_prize_year() -> Int | crispr | Gene Editing | -- |
| fn | first_crispr_therapy_approval | first_crispr_therapy_approval() -> String | crispr | Gene Editing | -- |
| struct | CasVariant | struct { name: String, organism: String, pam_sequence: String, cut_type: String, target_type: String, size_aa: Int, delivery_compatible: String, clinical_stage: String, citation: String } | crispr | Gene Editing | -- |
| struct | GuideRNARule | struct { rule_name: String, description: String, optimal_value: String, citation: String } | crispr | Gene Editing | -- |
| struct | DeliveryMethod | struct { name: String, mechanism: String, packaging_limit: String, advantages: String, limitations: String, clinical_use: String, citation: String } | crispr | Gene Editing | -- |
| struct | ClinicalTrial | struct { name: String, trade_name: String, target_gene: String, cas_system: String, indication: String, sponsor: String, approval_status: String, mechanism: String, citation: String } | crispr | Gene Editing | -- |
| struct | RepairPathway | struct { pathway: String, full_name: String, mechanism: String, fidelity: String, efficiency: String, cell_cycle_phase: String, key_proteins: String, applications: String, citation: String } | crispr | Gene Editing | -- |
| struct | OffTargetResult | struct { score: Float, interpretation: String } | crispr | Gene Editing | -- |
| struct | OnTargetFeature | struct { feature_name: String, position: String, preferred: String, effect: String, citation: String } | crispr | Gene Editing | -- |
| fn | PI | PI() -> Float | math | Mathematics | -- |
| fn | E | E() -> Float | math | Mathematics | -- |
| fn | TAU | TAU() -> Float | math | Mathematics | -- |
| fn | PHI | PHI() -> Float | math | Mathematics | -- |
| fn | EULER_GAMMA | EULER_GAMMA() -> Float | math | Mathematics | -- |
| fn | LN2 | LN2() -> Float | math | Mathematics | -- |
| fn | LN10 | LN10() -> Float | math | Mathematics | -- |
| fn | SQRT2 | SQRT2() -> Float | math | Mathematics | -- |
| fn | EPSILON | EPSILON() -> Float | math | Mathematics | -- |
| fn | sec | sec(x: Float) -> Float | math | Mathematics | -- |
| fn | csc | csc(x: Float) -> Float | math | Mathematics | -- |
| fn | cot | cot(x: Float) -> Float | math | Mathematics | -- |
| fn | asec | asec(x: Float) -> Float | math | Mathematics | -- |
| fn | acsc | acsc(x: Float) -> Float | math | Mathematics | -- |
| fn | acot | acot(x: Float) -> Float | math | Mathematics | -- |
| fn | log_base | log_base(x: Float, base: Float) -> Float | math | Mathematics | -- |
| fn | exp_decay | exp_decay(y0: Float, lambda: Float, t: Float) -> Float | math | Mathematics | -- |
| fn | sigmoid_standard | sigmoid_standard(x: Float) -> Float | math | Mathematics | -- |
| fn | relu | relu(x: Float) -> Float | math | Mathematics | -- |
| fn | softplus | softplus(x: Float) -> Float | math | Mathematics | -- |
| fn | gaussian | gaussian(x: Float, mu: Float, sigma: Float) -> Float | math | Mathematics | -- |
| fn | erf_approx | erf_approx(x: Float) -> Float | math | Mathematics | -- |
| fn | factorial | factorial(n: Int) -> Float | math | Mathematics | -- |
| fn | binomial | binomial(n: Int, k: Int) -> Float | math | Mathematics | -- |
| fn | gcd | gcd(a: Int, b: Int) -> Int | math | Mathematics | -- |
| fn | lcm | lcm(a: Int, b: Int) -> Int | math | Mathematics | -- |
| fn | is_prime | is_prime(n: Int) -> Bool | math | Mathematics | -- |
| fn | fibonacci | fibonacci(n: Int) -> Int | math | Mathematics | -- |
| fn | mod_int | mod_int(a: Int, b: Int) -> Int | math | Mathematics | -- |
| fn | mean_2 | mean_2(a: Float, b: Float) -> Float | math | Mathematics | -- |
| fn | mean_3 | mean_3(a: Float, b: Float, c: Float) -> Float | math | Mathematics | -- |
| fn | variance_2 | variance_2(a: Float, b: Float) -> Float | math | Mathematics | -- |
| fn | std_dev_2 | std_dev_2(a: Float, b: Float) -> Float | math | Mathematics | -- |
| fn | z_score | z_score(x: Float, mu: Float, sigma: Float) -> Float | math | Mathematics | -- |
| fn | percentile_rank | percentile_rank(value: Float, min_val: Float, max_val: Float) -> Float | math | Mathematics | -- |
| fn | linear_interpolate | linear_interpolate(x0: Float, y0: Float, x1: Float, y1: Float, x: Float) -> Float | math | Mathematics | -- |
| fn | weighted_mean_2 | weighted_mean_2(a: Float, wa: Float, b: Float, wb: Float) -> Float | math | Mathematics | -- |
| fn | celsius_to_fahrenheit | celsius_to_fahrenheit(c: Float) -> Float | math | Mathematics | -- |
| fn | fahrenheit_to_celsius | fahrenheit_to_celsius(f: Float) -> Float | math | Mathematics | -- |
| fn | celsius_to_kelvin | celsius_to_kelvin(c: Float) -> Float | math | Mathematics | -- |
| fn | kelvin_to_celsius | kelvin_to_celsius(k: Float) -> Float | math | Mathematics | -- |
| fn | degrees_to_radians | degrees_to_radians(d: Float) -> Float | math | Mathematics | -- |
| fn | radians_to_degrees | radians_to_degrees(r: Float) -> Float | math | Mathematics | -- |
| fn | SPEED_OF_LIGHT | SPEED_OF_LIGHT() -> Float | math | Mathematics | -- |
| fn | PLANCK | PLANCK() -> Float | math | Mathematics | -- |
| fn | BOLTZMANN | BOLTZMANN() -> Float | math | Mathematics | -- |
| fn | AVOGADRO | AVOGADRO() -> Float | math | Mathematics | -- |
| fn | GAS_CONSTANT | GAS_CONSTANT() -> Float | math | Mathematics | -- |
| fn | FARADAY | FARADAY() -> Float | math | Mathematics | -- |
| fn | GRAVITATIONAL | GRAVITATIONAL() -> Float | math | Mathematics | -- |
| fn | ELECTRON_MASS | ELECTRON_MASS() -> Float | math | Mathematics | -- |
| fn | PROTON_MASS | PROTON_MASS() -> Float | math | Mathematics | -- |
| fn | ELEMENTARY_CHARGE | ELEMENTARY_CHARGE() -> Float | math | Mathematics | -- |
| fn | math_constant_count | math_constant_count() -> Int | math | Mathematics | -- |
| fn | math_function_count | math_function_count() -> Int | math | Mathematics | -- |
| fn | physical_constant_count | physical_constant_count() -> Int | math | Mathematics | -- |
| fn | derivative | derivative(f_at_x: Float, f_at_x_plus_h: Float, h: Float) -> Float | calculus | Mathematics | -- |
| fn | derivative_central | derivative_central(f_at_x_minus_h: Float, f_at_x_plus_h: Float, h: Float) -> Float | calculus | Mathematics | -- |
| fn | derivative_second | derivative_second(f_at_x_minus_h: Float, f_at_x: Float, f_at_x_plus_h: Float, h: Float) -> Float | calculus | Mathematics | -- |
| fn | partial_x | partial_x(f_xy: Float, f_x_plus_h_y: Float, h: Float) -> Float | calculus | Mathematics | -- |
| fn | partial_y | partial_y(f_xy: Float, f_x_y_plus_h: Float, h: Float) -> Float | calculus | Mathematics | -- |
| fn | gradient_2d_x | gradient_2d_x(f_x_minus: Float, f_x_plus: Float, h: Float) -> Float | calculus | Mathematics | -- |
| fn | gradient_2d_y | gradient_2d_y(f_y_minus: Float, f_y_plus: Float, h: Float) -> Float | calculus | Mathematics | -- |
| fn | derivative_five_point | derivative_five_point(f_m2h: Float, f_mh: Float, f_ph: Float, f_p2h: Float, h: Float) -> Float | calculus | Mathematics | -- |
| fn | trapezoid | trapezoid(f_a: Float, f_b: Float, h: Float) -> Float | calculus | Mathematics | -- |
| fn | simpson | simpson(f_a: Float, f_mid: Float, f_b: Float, h: Float) -> Float | calculus | Mathematics | -- |
| fn | simpson_38 | simpson_38(f0: Float, f1: Float, f2: Float, f3: Float, h: Float) -> Float | calculus | Mathematics | -- |
| fn | midpoint_rule | midpoint_rule(f_mid: Float, h: Float) -> Float | calculus | Mathematics | -- |
| fn | gauss_legendre_2pt | gauss_legendre_2pt(f_neg: Float, f_pos: Float, a: Float, b: Float) -> Float | calculus | Mathematics | -- |
| fn | gauss_legendre_2pt_node_left | gauss_legendre_2pt_node_left(a: Float, b: Float) -> Float | calculus | Mathematics | -- |
| fn | gauss_legendre_2pt_node_right | gauss_legendre_2pt_node_right(a: Float, b: Float) -> Float | calculus | Mathematics | -- |
| fn | divergence_2d | divergence_2d(df_dx: Float, df_dy: Float) -> Float | calculus | Mathematics | -- |
| fn | divergence_3d | divergence_3d(df_dx: Float, df_dy: Float, df_dz: Float) -> Float | calculus | Mathematics | -- |
| fn | curl_2d | curl_2d(dfy_dx: Float, dfx_dy: Float) -> Float | calculus | Mathematics | -- |
| fn | laplacian_2d | laplacian_2d(d2f_dx2: Float, d2f_dy2: Float) -> Float | calculus | Mathematics | -- |
| fn | laplacian_3d | laplacian_3d(d2f_dx2: Float, d2f_dy2: Float, d2f_dz2: Float) -> Float | calculus | Mathematics | -- |
| fn | directional_derivative_2d | directional_derivative_2d(grad_x: Float, grad_y: Float, dir_x: Float, dir_y: Float) -> Float | calculus | Mathematics | -- |
| fn | gradient_magnitude_2d | gradient_magnitude_2d(grad_x: Float, grad_y: Float) -> Float | calculus | Mathematics | -- |
| fn | d_power | d_power(x: Float, n: Float) -> Float | calculus | Mathematics | -- |
| fn | d_exp | d_exp(x: Float) -> Float | calculus | Mathematics | -- |
| fn | d_exp_base | d_exp_base(x: Float, a: Float) -> Float | calculus | Mathematics | -- |
| fn | d_ln | d_ln(x: Float) -> Float | calculus | Mathematics | -- |
| fn | d_log_base | d_log_base(x: Float, a: Float) -> Float | calculus | Mathematics | -- |
| fn | d_sin | d_sin(x: Float) -> Float | calculus | Mathematics | -- |
| fn | d_cos | d_cos(x: Float) -> Float | calculus | Mathematics | -- |
| fn | d_tan | d_tan(x: Float) -> Float | calculus | Mathematics | -- |
| fn | d_asin | d_asin(x: Float) -> Float | calculus | Mathematics | -- |
| fn | d_acos | d_acos(x: Float) -> Float | calculus | Mathematics | -- |
| fn | d_atan | d_atan(x: Float) -> Float | calculus | Mathematics | -- |
| fn | d_sinh | d_sinh(x: Float) -> Float | calculus | Mathematics | -- |
| fn | d_cosh | d_cosh(x: Float) -> Float | calculus | Mathematics | -- |
| fn | int_power | int_power(x: Float, n: Float) -> Float | calculus | Mathematics | -- |
| fn | int_exp | int_exp(x: Float) -> Float | calculus | Mathematics | -- |
| fn | int_sin | int_sin(x: Float) -> Float | calculus | Mathematics | -- |
| fn | int_cos | int_cos(x: Float) -> Float | calculus | Mathematics | -- |
| fn | int_recip | int_recip(x: Float) -> Float | calculus | Mathematics | -- |
| fn | int_sec2 | int_sec2(x: Float) -> Float | calculus | Mathematics | -- |
| fn | definite_integral | definite_integral(antideriv_at_a: Float, antideriv_at_b: Float) -> Float | calculus | Mathematics | -- |
| fn | series_factorial | series_factorial(n: Int) -> Float | calculus | Mathematics | -- |
| fn | taylor_exp | taylor_exp(x: Float, n_terms: Int) -> Float | calculus | Mathematics | -- |
| fn | taylor_sin | taylor_sin(x: Float, n_terms: Int) -> Float | calculus | Mathematics | -- |
| fn | taylor_cos | taylor_cos(x: Float, n_terms: Int) -> Float | calculus | Mathematics | -- |
| fn | euler_mascheroni | euler_mascheroni() -> Float | calculus | Mathematics | -- |
| fn | golden_ratio | golden_ratio() -> Float | calculus | Mathematics | -- |
| fn | calculus_function_count | calculus_function_count() -> Int | calculus | Mathematics | -- |
| fn | euler_step | euler_step(y: Float, f_ty: Float, dt: Float) -> Float | diffeq | Mathematics | -- |
| fn | heun_step | heun_step(y: Float, f_ty: Float, f_ty_euler: Float, dt: Float) -> Float | diffeq | Mathematics | -- |
| fn | rk4_step | rk4_step(y: Float, k1: Float, k2: Float, k3: Float, k4: Float, dt: Float) -> Float | diffeq | Mathematics | -- |
| fn | rk4_k2_y | rk4_k2_y(y: Float, k1: Float, dt: Float) -> Float | diffeq | Mathematics | -- |
| fn | rk4_k3_y | rk4_k3_y(y: Float, k2: Float, dt: Float) -> Float | diffeq | Mathematics | -- |
| fn | rk4_k4_y | rk4_k4_y(y: Float, k3: Float, dt: Float) -> Float | diffeq | Mathematics | -- |
| fn | rk4_t_mid | rk4_t_mid(t: Float, dt: Float) -> Float | diffeq | Mathematics | -- |
| fn | rk4_t_end | rk4_t_end(t: Float, dt: Float) -> Float | diffeq | Mathematics | -- |
| fn | euler_step_2d_x | euler_step_2d_x(x: Float, f_val: Float, dt: Float) -> Float | diffeq | Mathematics | -- |
| fn | euler_step_2d_y | euler_step_2d_y(y: Float, g_val: Float, dt: Float) -> Float | diffeq | Mathematics | -- |
| fn | rk4_step_2d | rk4_step_2d(val: Float, k1: Float, k2: Float, k3: Float, k4: Float, dt: Float) -> Float | diffeq | Mathematics | -- |
| fn | euler_stability_limit | euler_stability_limit(eigenvalue_real: Float) -> Float | diffeq | Mathematics | -- |
| fn | stiffness_ratio | stiffness_ratio(fast_eigenvalue: Float, slow_eigenvalue: Float) -> Float | diffeq | Mathematics | -- |
| fn | heat_equation_explicit | heat_equation_explicit(u_left: Float,
u_center: Float,
u_right: Float,
alpha: Float,
dt: Float,
dx: Float) -> Float | diffeq | Mathematics | -- |
| fn | heat_cfl | heat_cfl(alpha: Float, dt: Float, dx: Float) -> Float | diffeq | Mathematics | -- |
| fn | wave_equation_step | wave_equation_step(u_left: Float,
u_center: Float,
u_right: Float,
u_prev_center: Float,
c: Float,
dt: Float,
dx: Float) -> Float | diffeq | Mathematics | -- |
| fn | wave_cfl | wave_cfl(c: Float, dt: Float, dx: Float) -> Float | diffeq | Mathematics | -- |
| fn | laplace_jacobi | laplace_jacobi(u_left: Float, u_right: Float, u_up: Float, u_down: Float) -> Float | diffeq | Mathematics | -- |
| fn | poisson_jacobi | poisson_jacobi(u_left: Float,
u_right: Float,
u_up: Float,
u_down: Float,
f_center: Float,
dx: Float) -> Float | diffeq | Mathematics | -- |
| fn | laplace_gauss_seidel | laplace_gauss_seidel(u_left_new: Float, u_right: Float, u_up_new: Float, u_down: Float) -> Float | diffeq | Mathematics | -- |
| fn | logistic_growth | logistic_growth(y: Float, r: Float, k_capacity: Float) -> Float | diffeq | Mathematics | -- |
| fn | logistic_exact | logistic_exact(y0: Float, r: Float, k_capacity: Float, t: Float) -> Float | diffeq | Mathematics | -- |
| fn | exponential_decay | exponential_decay(y: Float, lambda: Float) -> Float | diffeq | Mathematics | -- |
| fn | exponential_decay_exact | exponential_decay_exact(y0: Float, lambda: Float, t: Float) -> Float | diffeq | Mathematics | -- |
| fn | half_life | half_life(lambda: Float) -> Float | diffeq | Mathematics | -- |
| fn | decay_constant | decay_constant(t_half: Float) -> Float | diffeq | Mathematics | -- |
| fn | michaelis_menten | michaelis_menten(substrate: Float, vmax: Float, km: Float) -> Float | diffeq | Mathematics | -- |
| fn | hill_equation | hill_equation(substrate: Float, vmax: Float, k: Float, n: Float) -> Float | diffeq | Mathematics | -- |
| fn | hodgkin_huxley_gate | hodgkin_huxley_gate(x: Float, alpha: Float, beta: Float) -> Float | diffeq | Mathematics | -- |
| fn | hh_steady_state | hh_steady_state(alpha: Float, beta: Float) -> Float | diffeq | Mathematics | -- |
| fn | hh_time_constant | hh_time_constant(alpha: Float, beta: Float) -> Float | diffeq | Mathematics | -- |
| fn | lotka_volterra_prey | lotka_volterra_prey(x: Float, y: Float, alpha: Float, beta: Float) -> Float | diffeq | Mathematics | -- |
| fn | lotka_volterra_predator | lotka_volterra_predator(x: Float, y: Float, delta: Float, gamma_r: Float) -> Float | diffeq | Mathematics | -- |
| fn | sir_dS | sir_dS(s_pop: Float, i_pop: Float, beta: Float, n_pop: Float) -> Float | diffeq | Mathematics | -- |
| fn | sir_dI | sir_dI(s_pop: Float, i_pop: Float, beta: Float, gamma_r: Float, n_pop: Float) -> Float | diffeq | Mathematics | -- |
| fn | sir_dR | sir_dR(i_pop: Float, gamma_r: Float) -> Float | diffeq | Mathematics | -- |
| fn | sir_r0 | sir_r0(beta: Float, gamma_r: Float) -> Float | diffeq | Mathematics | -- |
| fn | pk_one_compartment | pk_one_compartment(dose: Float, ka: Float, ke: Float, vd: Float, t: Float) -> Float | diffeq | Mathematics | -- |
| fn | pk_tmax | pk_tmax(ka: Float, ke: Float) -> Float | diffeq | Mathematics | -- |
| fn | pk_steady_state | pk_steady_state(infusion_rate: Float, clearance: Float) -> Float | diffeq | Mathematics | -- |
| fn | richardson_extrapolation | richardson_extrapolation(approx_h: Float, approx_h2: Float, p: Float) -> Float | diffeq | Mathematics | -- |
| fn | truncation_error_euler | truncation_error_euler(d2y_dt2: Float, dt: Float) -> Float | diffeq | Mathematics | -- |
| fn | truncation_error_rk4 | truncation_error_rk4(d5y_dt5: Float, dt: Float) -> Float | diffeq | Mathematics | -- |
| fn | diffeq_function_count | diffeq_function_count() -> Int | diffeq | Mathematics | -- |
| fn | protein | protein(a: String, n: String, g: String, l: Int, s: String) -> ProteinEntry | human_proteome | Proteomics | -- |
| fn | unknown_protein | unknown_protein() -> ProteinEntry | human_proteome | Proteomics | -- |
| fn | lookup_protein_A | lookup_protein_A(acc: String) -> ProteinEntry | human_proteome | Proteomics | A0A087X1C5, A0A096LP01, A0A0B4J2F0, A0A0C5B5G6, A0A0K2S4Q6, A0A0U1RRE5, A0A1B0GTW7, A0A2R8Y7D0, A0A8I5KQE6, A0AV02, ... (+1056) |
| fn | lookup_protein_B | lookup_protein_B(acc: String) -> ProteinEntry | human_proteome | Proteomics | B0I1T2, B0L3A2, B0YJ81, B1AK53, B2RPK0, B2RTY4, B2RUY7, B2RUZ4, B2RXF5, B2RXH2, ... (+63) |
| fn | lookup_protein_C | lookup_protein_C(acc: String) -> ProteinEntry | human_proteome | Proteomics | C0HME6, C4AMC7, C9JE40, C9JLW8, C9JR72, C9JRZ8, C0HLU2, C0HLV8, C0HM02, C0HM98, ... (+41) |
| fn | lookup_protein_D | lookup_protein_D(acc: String) -> ProteinEntry | human_proteome | Proteomics | D3W0D1, D6RGH6, D6R901, D6R9N7, D6RA61, D6RBQ6, D6RCP7, D6RIA3, D6RJB6, D3DTV9, ... (+5) |
| fn | lookup_protein_E | lookup_protein_E(acc: String) -> ProteinEntry | human_proteome | Proteomics | E0CX11, E9PAV3, E9PQX1, E2RYF6, E2RYF7, E7ETH6, E9PB15, E9PQ53, E5RG02, E5RHQ5, ... (+14) |
| fn | lookup_protein_F | lookup_protein_F(acc: String) -> ProteinEntry | human_proteome | Proteomics | F5H094, F7VJQ1, F2Z333, F5GYI3, F5H284, F5H4A9, F5H4B4, F8VTS6, F8W0I5, F8W1W9, ... (+5) |
| fn | lookup_protein_G | lookup_protein_G(acc: String) -> ProteinEntry | human_proteome | Proteomics | G2XKQ0, G3V0H7, G9CGD6, G5E9R7, G3V211 |
| fn | lookup_protein_H | lookup_protein_H(acc: String) -> ProteinEntry | human_proteome | Proteomics | H0YL14, H3BV60, H3BRN8, H3BSY2, H0UI37, H0Y354, H0Y7S4, H0YKK7, H0YM25, H3BPF8, ... (+17) |
| fn | lookup_protein_I | lookup_protein_I(acc: String) -> ProteinEntry | human_proteome | Proteomics | I0J062, I3L273, I3L3R5, I1YAP6, I3L0S3, I3L1E1, I3L3L1, I6L899 |
| fn | lookup_protein_J | lookup_protein_J(acc: String) -> ProteinEntry | human_proteome | Proteomics | J3KSC0 |
| fn | lookup_protein_K | lookup_protein_K(acc: String) -> ProteinEntry | human_proteome | Proteomics | K7EJ46, K9M1U5, K7EIQ3 |
| fn | lookup_protein_L | lookup_protein_L(acc: String) -> ProteinEntry | human_proteome | Proteomics | L0R8F8, L0R6Q1, L0R819 |
| fn | lookup_protein_M | lookup_protein_M(acc: String) -> ProteinEntry | human_proteome | Proteomics | M0R2J8, M5A8F1, M0QZC1 |
| fn | lookup_protein_O | lookup_protein_O(acc: String) -> ProteinEntry | human_proteome | Proteomics | O00115, O00116, O00124, O00139, O00141, O00142, O00144, O00148, O00151, O00154, ... (+1814) |
| fn | lookup_protein_P | lookup_protein_P(acc: String) -> ProteinEntry | human_proteome | Proteomics | P00156, P00167, P00325, P00326, P00338, P00352, P00367, P00374, P00387, P00390, ... (+4076) |
| fn | lookup_protein_Q | lookup_protein_Q(acc: String) -> ProteinEntry | human_proteome | Proteomics | Q00005, Q00013, Q00056, Q00059, Q00169, Q00266, Q00325, Q00341, Q00403, Q00444, ... (+13210) |
| fn | lookup_protein_S | lookup_protein_S(acc: String) -> ProteinEntry | human_proteome | Proteomics | S4R3P1, S4R3Y5 |
| fn | lookup_protein_U | lookup_protein_U(acc: String) -> ProteinEntry | human_proteome | Proteomics | U3KPV4 |
| fn | lookup_protein_W | lookup_protein_W(acc: String) -> ProteinEntry | human_proteome | Proteomics | W5XKT8, W6CW81 |
| fn | lookup_protein_X | lookup_protein_X(acc: String) -> ProteinEntry | human_proteome | Proteomics | X6R8D5, X6R8R1 |
| fn | lookup_protein | lookup_protein(acc: String) -> ProteinEntry | human_proteome | Proteomics | A, B, C, D, E, F, G, H, I, J, ... (+10) |
| fn | proteome_count | proteome_count() -> Int | human_proteome | Proteomics | -- |
| struct | ProteinEntry | struct { accession: String, name: String, gene: String, length: Int, sequence: String } | human_proteome | Proteomics | -- |
| fn | phoneme | phoneme(a: Int, i: String, c: String, p: String, m: String, v: String, e: String, h: String) -> Phoneme | phonemes | Linguistics | -- |
| fn | unknown_phoneme | unknown_phoneme() -> Phoneme | phonemes | Linguistics | -- |
| fn | lookup_phoneme | lookup_phoneme(addr: Int) -> Phoneme | phonemes | Linguistics | -- |
| fn | phoneme_by_ipa | phoneme_by_ipa(ipa: String) -> Phoneme | phonemes | Linguistics | p, b, t, d, k, g, f, v, θ, ð, ... (+34) |
| fn | phoneme_count | phoneme_count() -> Int | phonemes | Linguistics | -- |
| fn | consonant_count | consonant_count() -> Int | phonemes | Linguistics | -- |
| fn | vowel_count | vowel_count() -> Int | phonemes | Linguistics | -- |
| fn | diphthong_count | diphthong_count() -> Int | phonemes | Linguistics | -- |
| fn | is_valid_phoneme_address | is_valid_phoneme_address(addr: Int) -> Bool | phonemes | Linguistics | -- |
| struct | Phoneme | struct { address: Int, ipa: String, category: String, place: String, manner: String, voicing: String, example: String, example_highlight: String } | phonemes | Linguistics | -- |
| fn | pos | pos(a: Int, n: String, s: String, f: String, e: String, o: Bool) -> PartOfSpeech | parts_of_speech | Linguistics | -- |
| fn | unknown_pos | unknown_pos() -> PartOfSpeech | parts_of_speech | Linguistics | -- |
| fn | lookup_pos | lookup_pos(addr: Int) -> PartOfSpeech | parts_of_speech | Linguistics | -- |
| fn | pos_by_name | pos_by_name(name: String) -> PartOfSpeech | parts_of_speech | Linguistics | noun, verb, adjective, adverb, pronoun, preposition, conjunction, interjection, determiner, numeral |
| fn | pos_fits_slot | pos_fits_slot(p: PartOfSpeech, slot: String) -> Bool | parts_of_speech | Linguistics | -- |
| fn | pos_count | pos_count() -> Int | parts_of_speech | Linguistics | -- |
| fn | is_valid_pos_address | is_valid_pos_address(addr: Int) -> Bool | parts_of_speech | Linguistics | -- |
| fn | is_open_class | is_open_class(p: PartOfSpeech) -> Bool | parts_of_speech | Linguistics | -- |
| struct | PartOfSpeech | struct { address: Int, name: String, slots: String, function: String, examples: String, open_class: Bool } | parts_of_speech | Linguistics | -- |
| struct | HeartChamber | struct HeartChamber | cardiovascular | Physiology | -- |
| fn | chamber | chamber(nm: String, abbr: String, edv: Float, esv: Float, wt: Float, sp: Float, dp: Float, desc: String, ci: String) | cardiovascular | Physiology | -- |
| fn | left_ventricle | left_ventricle() | cardiovascular | Physiology | -- |
| fn | right_ventricle | right_ventricle() | cardiovascular | Physiology | -- |
| fn | left_atrium | left_atrium() | cardiovascular | Physiology | -- |
| fn | right_atrium | right_atrium() | cardiovascular | Physiology | -- |
| struct | HeartValve | struct HeartValve | cardiovascular | Physiology | -- |
| fn | valve | valve(nm: String, vt: String, loc: String, na: Float, ss: Float, lf: Int, od: String, snd: String, cn: String, ci: String) | cardiovascular | Physiology | -- |
| fn | mitral_valve | mitral_valve() | cardiovascular | Physiology | -- |
| fn | aortic_valve | aortic_valve() | cardiovascular | Physiology | -- |
| fn | tricuspid_valve | tricuspid_valve() | cardiovascular | Physiology | -- |
| fn | pulmonic_valve | pulmonic_valve() | cardiovascular | Physiology | -- |
| struct | CoronaryArtery | struct CoronaryArtery | cardiovascular | Physiology | -- |
| fn | coronary | coronary(nm: String, abbr: String, orig: String, terr: String, dia: Float, fl: Float, ecg: String, clin: String, ci: String) | cardiovascular | Physiology | -- |
| fn | lad | lad() | cardiovascular | Physiology | -- |
| fn | lcx | lcx() | cardiovascular | Physiology | -- |
| fn | rca | rca() | cardiovascular | Physiology | -- |
| fn | coronary_blood_flow_mL_per_min | coronary_blood_flow_mL_per_min() | cardiovascular | Physiology | -- |
| fn | coronary_blood_flow_percent_diastole | coronary_blood_flow_percent_diastole() | cardiovascular | Physiology | -- |
| fn | coronary_oxygen_extraction_percent | coronary_oxygen_extraction_percent() | cardiovascular | Physiology | -- |
| fn | stroke_volume | stroke_volume(edv_mL: Float, esv_mL: Float) | cardiovascular | Physiology | -- |
| fn | ejection_fraction | ejection_fraction(edv_mL: Float, esv_mL: Float) | cardiovascular | Physiology | -- |
| fn | cardiac_output | cardiac_output(hr_bpm: Float, sv_mL: Float) | cardiovascular | Physiology | -- |
| fn | cardiac_index | cardiac_index(co_L_per_min: Float, bsa_m2: Float) | cardiovascular | Physiology | -- |
| fn | body_surface_area | body_surface_area(height_cm: Float, weight_kg: Float) | cardiovascular | Physiology | -- |
| fn | frank_starling_sv | frank_starling_sv(edv_mL: Float, sv_max: Float, k: Float, edv_min: Float) | cardiovascular | Physiology | -- |
| fn | frank_starling_normal | frank_starling_normal(edv_mL: Float) | cardiovascular | Physiology | -- |
| fn | frank_starling_failing | frank_starling_failing(edv_mL: Float) | cardiovascular | Physiology | -- |
| fn | rate_pressure_product | rate_pressure_product(hr: Float, sbp: Float) | cardiovascular | Physiology | -- |
| fn | cardiac_power_output | cardiac_power_output(map_mmHg: Float, co_L_per_min: Float) | cardiovascular | Physiology | -- |
| fn | mean_arterial_pressure | mean_arterial_pressure(sbp: Float, dbp: Float) | cardiovascular | Physiology | -- |
| fn | pulse_pressure | pulse_pressure(sbp: Float, dbp: Float) | cardiovascular | Physiology | -- |
| fn | systemic_vascular_resistance | systemic_vascular_resistance(map: Float, cvp: Float, co_L_per_min: Float) | cardiovascular | Physiology | -- |
| fn | svr_wood_units | svr_wood_units(map: Float, cvp: Float, co_L_per_min: Float) | cardiovascular | Physiology | -- |
| fn | pulmonary_vascular_resistance | pulmonary_vascular_resistance(mpap: Float, pcwp: Float, co_L_per_min: Float) | cardiovascular | Physiology | -- |
| struct | BaroreceptorResponse | struct BaroreceptorResponse | cardiovascular | Physiology | -- |
| fn | baroreceptor | baroreceptor(nm: String, loc: String, stim: String, aff: String, onset: Float, peak: Float, resp: String, ci: String) | cardiovascular | Physiology | -- |
| fn | carotid_sinus_baroreceptor | carotid_sinus_baroreceptor() | cardiovascular | Physiology | -- |
| fn | aortic_arch_baroreceptor | aortic_arch_baroreceptor() | cardiovascular | Physiology | -- |
| fn | baroreceptor_firing_rate | baroreceptor_firing_rate(map_mmHg: Float, set_point: Float, gain: Float) | cardiovascular | Physiology | -- |
| struct | RAASComponent | struct RAASComponent | cardiovascular | Physiology | -- |
| fn | raas | raas(nm: String, src: String, stim: String, prod: String, eff: String, on: String, tgt: String, ci: String) | cardiovascular | Physiology | -- |
| fn | renin | renin() | cardiovascular | Physiology | -- |
| fn | ace | ace() | cardiovascular | Physiology | -- |
| fn | angiotensin_ii | angiotensin_ii() | cardiovascular | Physiology | -- |
| fn | aldosterone | aldosterone() | cardiovascular | Physiology | -- |
| struct | SympatheticEffect | struct SympatheticEffect | cardiovascular | Physiology | -- |
| fn | sympathetic | sympathetic(rec: String, loc: String, ag: String, eff: String, block: String, ci: String) | cardiovascular | Physiology | -- |
| fn | alpha_1_vascular | alpha_1_vascular() | cardiovascular | Physiology | -- |
| fn | beta_1_cardiac | beta_1_cardiac() | cardiovascular | Physiology | -- |
| fn | beta_2_vascular | beta_2_vascular() | cardiovascular | Physiology | -- |
| fn | m2_parasympathetic | m2_parasympathetic() | cardiovascular | Physiology | -- |
| fn | arterial_oxygen_content | arterial_oxygen_content(hgb_g_dL: Float, sao2_percent: Float, pao2_mmHg: Float) | cardiovascular | Physiology | -- |
| fn | venous_oxygen_content | venous_oxygen_content(hgb_g_dL: Float, svo2_percent: Float, pvo2_mmHg: Float) | cardiovascular | Physiology | -- |
| fn | oxygen_delivery | oxygen_delivery(co_L_per_min: Float, cao2_mL_per_dL: Float) | cardiovascular | Physiology | -- |
| fn | oxygen_consumption | oxygen_consumption(co_L_per_min: Float, cao2: Float, cvo2: Float) | cardiovascular | Physiology | -- |
| fn | oxygen_extraction_ratio | oxygen_extraction_ratio(cao2: Float, cvo2: Float) | cardiovascular | Physiology | -- |
| fn | fick_cardiac_output | fick_cardiac_output(vo2_mL_per_min: Float, cao2: Float, cvo2: Float) | cardiovascular | Physiology | -- |
| fn | svo2_normal | svo2_normal() | cardiovascular | Physiology | -- |
| fn | evolve | evolve(&mut self, dt: Duration, flow_in: Float) | cardiovascular | Physiology | -- |
| fn | evolve | evolve(&mut self, dt: Duration, flow_in: Float) | cardiovascular | Physiology | -- |
| fn | total_pressure | total_pressure(&self, flow_in: Float) | cardiovascular | Physiology | -- |
| fn | evolve | evolve(&mut self, dt: Duration, pressure_in: Float) | cardiovascular | Physiology | -- |
| fn | windkessel_params_healthy | windkessel_params_healthy() | cardiovascular | Physiology | -- |
| fn | windkessel_params_heart_failure | windkessel_params_heart_failure() | cardiovascular | Physiology | -- |
| fn | windkessel_params_hemorrhagic_shock | windkessel_params_hemorrhagic_shock() | cardiovascular | Physiology | -- |
| fn | windkessel_params_hypertension | windkessel_params_hypertension() | cardiovascular | Physiology | -- |
| fn | gorlin_valve_area | gorlin_valve_area(co_mL_per_min: Float, dfp_seconds: Float, hr: Float, mean_gradient_mmHg: Float) | cardiovascular | Physiology | -- |
| fn | poiseuille_flow | poiseuille_flow(radius_cm: Float, pressure_drop_dyn_per_cm2: Float, viscosity_poise: Float, length_cm: Float) | cardiovascular | Physiology | -- |
| fn | reynolds_number | reynolds_number(density_g_per_cm3: Float, velocity_cm_per_s: Float, diameter_cm: Float, viscosity_poise: Float) | cardiovascular | Physiology | -- |
| fn | bernoulli_gradient | bernoulli_gradient(velocity_m_per_s: Float) | cardiovascular | Physiology | -- |
| fn | wall_shear_stress | wall_shear_stress(viscosity_poise: Float, flow_mL_per_s: Float, radius_cm: Float) | cardiovascular | Physiology | -- |
| fn | lv_stroke_work_index | lv_stroke_work_index(svi_mL_per_m2: Float, map: Float, pcwp: Float) | cardiovascular | Physiology | -- |
| fn | rv_stroke_work_index | rv_stroke_work_index(svi_mL_per_m2: Float, mpap: Float, cvp: Float) | cardiovascular | Physiology | -- |
| fn | shock_index | shock_index(hr: Float, sbp: Float) | cardiovascular | Physiology | -- |
| fn | modified_shock_index | modified_shock_index(hr: Float, map: Float) | cardiovascular | Physiology | -- |
| fn | espvr_pressure | espvr_pressure(ees: Float, volume_mL: Float, v0: Float) | cardiovascular | Physiology | -- |
| fn | ees_normal | ees_normal() | cardiovascular | Physiology | -- |
| fn | ees_heart_failure | ees_heart_failure() | cardiovascular | Physiology | -- |
| fn | ees_dobutamine | ees_dobutamine() | cardiovascular | Physiology | -- |
| fn | edpvr_pressure | edpvr_pressure(a: Float, b: Float, volume_mL: Float, v0: Float) | cardiovascular | Physiology | -- |
| fn | edpvr_normal | edpvr_normal(volume_mL: Float) | cardiovascular | Physiology | -- |
| fn | edpvr_stiff | edpvr_stiff(volume_mL: Float) | cardiovascular | Physiology | -- |
| fn | effective_arterial_elastance | effective_arterial_elastance(esp: Float, sv_mL: Float) | cardiovascular | Physiology | -- |
| fn | ventricular_arterial_coupling | ventricular_arterial_coupling(ea: Float, ees: Float) | cardiovascular | Physiology | -- |
| fn | stroke_work_approx | stroke_work_approx(sv_mL: Float, esp: Float, edp: Float) | cardiovascular | Physiology | -- |
| fn | dpdt_max_normal | dpdt_max_normal() | cardiovascular | Physiology | -- |
| fn | dpdt_max_hf | dpdt_max_hf() | cardiovascular | Physiology | -- |
| fn | tau_normal_ms | tau_normal_ms() | cardiovascular | Physiology | -- |
| fn | tau_diastolic_dysfunction_ms | tau_diastolic_dysfunction_ms() | cardiovascular | Physiology | -- |
| fn | blood_density_kg_per_m3 | blood_density_kg_per_m3() | cardiovascular | Physiology | -- |
| fn | blood_viscosity_cP | blood_viscosity_cP() | cardiovascular | Physiology | -- |
| fn | plasma_viscosity_cP | plasma_viscosity_cP() | cardiovascular | Physiology | -- |
| fn | blood_viscosity_from_hct | blood_viscosity_from_hct(hct_fraction: Float, shear_rate: Float) | cardiovascular | Physiology | -- |
| fn | total_blood_volume_male | total_blood_volume_male(height_m: Float, weight_kg: Float) | cardiovascular | Physiology | -- |
| fn | total_blood_volume_female | total_blood_volume_female(height_m: Float, weight_kg: Float) | cardiovascular | Physiology | -- |
| fn | avg_blood_volume_mL | avg_blood_volume_mL(weight_kg: Float) | cardiovascular | Physiology | -- |
| struct | HemodynamicNormal | struct HemodynamicNormal | cardiovascular | Physiology | -- |
| fn | hd_normal | hd_normal(p: String, nr: String, u: String, loc: String, cs: String, ci: String) | cardiovascular | Physiology | -- |
| fn | hemodynamic_normals | hemodynamic_normals() | cardiovascular | Physiology | -- |
| fn | pa_catheter_normals | pa_catheter_normals() | cardiovascular | Physiology | -- |
| fn | mmHg_to_Pa | mmHg_to_Pa(mmHg: Float) | cardiovascular | Physiology | -- |
| fn | Pa_to_mmHg | Pa_to_mmHg(pa: Float) | cardiovascular | Physiology | -- |
| fn | mmHg_to_cmH2O | mmHg_to_cmH2O(mmHg: Float) | cardiovascular | Physiology | -- |
| fn | wood_units_to_dyn | wood_units_to_dyn(wu: Float) | cardiovascular | Physiology | -- |
| fn | dyn_to_wood_units | dyn_to_wood_units(dyn: Float) | cardiovascular | Physiology | -- |
| fn | cP_to_Pa_s | cP_to_Pa_s(cp: Float) | cardiovascular | Physiology | -- |
| fn | mL_per_s_to_L_per_min | mL_per_s_to_L_per_min(mls: Float) | cardiovascular | Physiology | -- |
| fn | L_per_min_to_mL_per_s | L_per_min_to_mL_per_s(lpm: Float) | cardiovascular | Physiology | -- |
| fn | evolve | evolve(&mut self, dt: Duration, flow_in: Float) | hemodynamics | Physiology | -- |
| fn | analytic_step | analytic_step(&mut self, dt_s: Float, flow_in: Float) | hemodynamics | Physiology | -- |
| fn | time_constant | time_constant(&self) | hemodynamics | Physiology | -- |
| fn | diastolic_pressure | diastolic_pressure(&self, p0: Float, t_s: Float) | hemodynamics | Physiology | -- |
| fn | wk2_healthy | wk2_healthy() | hemodynamics | Physiology | -- |
| fn | wk2_heart_failure | wk2_heart_failure() | hemodynamics | Physiology | -- |
| fn | wk2_hemorrhagic_shock | wk2_hemorrhagic_shock() | hemodynamics | Physiology | -- |
| fn | wk2_hypertension | wk2_hypertension() | hemodynamics | Physiology | -- |
| fn | wk2_septic_shock | wk2_septic_shock() | hemodynamics | Physiology | -- |
| fn | evolve | evolve(&mut self, dt: Duration, flow_in: Float) | hemodynamics | Physiology | -- |
| fn | total_pressure | total_pressure(&self, flow_in: Float) | hemodynamics | Physiology | -- |
| fn | analytic_step | analytic_step(&mut self, dt_s: Float, flow_in: Float) | hemodynamics | Physiology | -- |
| fn | impedance_magnitude_sq | impedance_magnitude_sq(&self, omega: Float) | hemodynamics | Physiology | -- |
| fn | wk3_healthy | wk3_healthy() | hemodynamics | Physiology | -- |
| fn | wk3_heart_failure | wk3_heart_failure() | hemodynamics | Physiology | -- |
| fn | wk3_hemorrhagic_shock | wk3_hemorrhagic_shock() | hemodynamics | Physiology | -- |
| fn | wk3_hypertension | wk3_hypertension() | hemodynamics | Physiology | -- |
| fn | wk3_aortic_stenosis | wk3_aortic_stenosis() | hemodynamics | Physiology | -- |
| fn | evolve | evolve(&mut self, dt: Duration, pressure_in: Float) | hemodynamics | Physiology | -- |
| fn | total_pressure | total_pressure(&self) | hemodynamics | Physiology | -- |
| fn | natural_frequency | natural_frequency(&self) | hemodynamics | Physiology | -- |
| fn | damping_ratio | damping_ratio(&self) | hemodynamics | Physiology | -- |
| fn | wk4_healthy | wk4_healthy() | hemodynamics | Physiology | -- |
| fn | wk4_heart_failure | wk4_heart_failure() | hemodynamics | Physiology | -- |
| fn | wk4_hemorrhagic_shock | wk4_hemorrhagic_shock() | hemodynamics | Physiology | -- |
| fn | wk4_elderly_stiff | wk4_elderly_stiff() | hemodynamics | Physiology | -- |
| fn | blood_density_kg_m3 | blood_density_kg_m3() | hemodynamics | Physiology | -- |
| fn | blood_density_g_cm3 | blood_density_g_cm3() | hemodynamics | Physiology | -- |
| fn | plasma_density_kg_m3 | plasma_density_kg_m3() | hemodynamics | Physiology | -- |
| fn | blood_viscosity_high_shear_cP | blood_viscosity_high_shear_cP() | hemodynamics | Physiology | -- |
| fn | blood_viscosity_high_shear_Pa_s | blood_viscosity_high_shear_Pa_s() | hemodynamics | Physiology | -- |
| fn | plasma_viscosity_cP | plasma_viscosity_cP() | hemodynamics | Physiology | -- |
| fn | plasma_viscosity_Pa_s | plasma_viscosity_Pa_s() | hemodynamics | Physiology | -- |
| fn | carreau_blood_params | carreau_blood_params() | hemodynamics | Physiology | -- |
| fn | carreau_blood_viscosity | carreau_blood_viscosity(gamma_dot: Float) | hemodynamics | Physiology | -- |
| fn | casson_viscosity | casson_viscosity(gamma_dot: Float, tau_yield: Float, mu_casson: Float) | hemodynamics | Physiology | -- |
| fn | casson_blood_viscosity | casson_blood_viscosity(gamma_dot: Float) | hemodynamics | Physiology | -- |
| fn | casson_blood_params | casson_blood_params() | hemodynamics | Physiology | -- |
| fn | power_law_viscosity | power_law_viscosity(gamma_dot: Float, k: Float, n: Float) | hemodynamics | Physiology | -- |
| fn | power_law_blood_params | power_law_blood_params() | hemodynamics | Physiology | -- |
| fn | quemada_viscosity | quemada_viscosity(hct_fraction: Float, mu_plasma: Float, k: Float) | hemodynamics | Physiology | -- |
| fn | quemada_blood_viscosity | quemada_blood_viscosity(hct_fraction: Float) | hemodynamics | Physiology | -- |
| fn | reynolds_number | reynolds_number(rho: Float, velocity: Float, diameter: Float, mu: Float) | hemodynamics | Physiology | -- |
| fn | reynolds_classify | reynolds_classify(re: Float) | hemodynamics | Physiology | -- |
| fn | reynolds_aorta_rest | reynolds_aorta_rest() | hemodynamics | Physiology | -- |
| fn | reynolds_aorta_exercise | reynolds_aorta_exercise() | hemodynamics | Physiology | -- |
| fn | reynolds_femoral | reynolds_femoral() | hemodynamics | Physiology | -- |
| fn | reynolds_capillary | reynolds_capillary() | hemodynamics | Physiology | -- |
| fn | womersley_number | womersley_number(radius: Float, omega: Float, rho: Float, mu: Float) | hemodynamics | Physiology | -- |
| fn | womersley_from_hr | womersley_from_hr(radius_m: Float, hr_bpm: Float, rho: Float, mu: Float) | hemodynamics | Physiology | -- |
| fn | womersley_classify | womersley_classify(alpha: Float) | hemodynamics | Physiology | -- |
| fn | womersley_aorta | womersley_aorta() | hemodynamics | Physiology | -- |
| fn | womersley_femoral | womersley_femoral() | hemodynamics | Physiology | -- |
| fn | womersley_arteriole | womersley_arteriole() | hemodynamics | Physiology | -- |
| fn | dean_number | dean_number(re: Float, tube_radius: Float, curvature_radius: Float) | hemodynamics | Physiology | -- |
| fn | strouhal_number | strouhal_number(frequency: Float, diameter: Float, velocity: Float) | hemodynamics | Physiology | -- |
| fn | ns_convective_acceleration | ns_convective_acceleration(rho: Float, velocity: Float, du_dx: Float) | hemodynamics | Physiology | -- |
| fn | ns_viscous_term | ns_viscous_term(mu: Float, d2u_dx2: Float) | hemodynamics | Physiology | -- |
| fn | ns_unsteady_term | ns_unsteady_term(rho: Float, du_dt: Float) | hemodynamics | Physiology | -- |
| fn | ns_pressure_gradient | ns_pressure_gradient(dp_dx: Float) | hemodynamics | Physiology | -- |
| fn | poiseuille_flow | poiseuille_flow(radius_cm: Float, pressure_drop: Float, viscosity_poise: Float, length_cm: Float) | hemodynamics | Physiology | -- |
| fn | poiseuille_resistance | poiseuille_resistance(radius_cm: Float, viscosity_poise: Float, length_cm: Float) | hemodynamics | Physiology | -- |
| fn | poiseuille_velocity | poiseuille_velocity(radial_position: Float, tube_radius: Float, pressure_drop: Float, viscosity: Float, length: Float) | hemodynamics | Physiology | -- |
| fn | poiseuille_max_velocity | poiseuille_max_velocity(tube_radius: Float, pressure_drop: Float, viscosity: Float, length: Float) | hemodynamics | Physiology | -- |
| fn | poiseuille_mean_velocity | poiseuille_mean_velocity(tube_radius: Float, pressure_drop: Float, viscosity: Float, length: Float) | hemodynamics | Physiology | -- |
| fn | wall_shear_stress | wall_shear_stress(viscosity: Float, flow: Float, radius: Float) | hemodynamics | Physiology | -- |
| fn | wall_shear_stress_from_gradient | wall_shear_stress_from_gradient(pressure_drop: Float, radius: Float, length: Float) | hemodynamics | Physiology | -- |
| fn | wss_classify | wss_classify(tau_dyne_cm2: Float) | hemodynamics | Physiology | -- |
| fn | oscillatory_shear_index | oscillatory_shear_index(mean_wss_magnitude: Float, time_avg_wss_vector_magnitude: Float) | hemodynamics | Physiology | -- |
| fn | osi_classify | osi_classify(osi: Float) | hemodynamics | Physiology | -- |
| fn | entrance_length | entrance_length(re: Float, diameter: Float) | hemodynamics | Physiology | -- |
| fn | moens_korteweg | moens_korteweg(youngs_modulus_Pa: Float, wall_thickness_m: Float, rho: Float, inner_radius_m: Float) | hemodynamics | Physiology | -- |
| fn | bramwell_hill | bramwell_hill(volume: Float, dp: Float, rho: Float, dv: Float) | hemodynamics | Physiology | -- |
| fn | pwv_from_distensibility | pwv_from_distensibility(rho: Float, distensibility: Float) | hemodynamics | Physiology | -- |
| fn | pwv_reference_age | pwv_reference_age(age: Float) | hemodynamics | Physiology | -- |
| fn | pwv_classify | pwv_classify(pwv_m_s: Float, age: Float) | hemodynamics | Physiology | -- |
| fn | pwv_cv_risk_threshold | pwv_cv_risk_threshold() | hemodynamics | Physiology | -- |
| fn | reflection_coefficient | reflection_coefficient(z_distal: Float, z_proximal: Float) | hemodynamics | Physiology | -- |
| fn | transmission_coefficient | transmission_coefficient(z_distal: Float, z_proximal: Float) | hemodynamics | Physiology | -- |
| fn | bifurcation_reflection | bifurcation_reflection(z_parent: Float, z_daughter_a: Float, z_daughter_b: Float) | hemodynamics | Physiology | -- |
| fn | augmentation_index | augmentation_index(p1_systolic_shoulder: Float, p2_systolic_peak: Float, pulse_pressure: Float) | hemodynamics | Physiology | -- |
| fn | aix_classify | aix_classify(aix: Float) | hemodynamics | Physiology | -- |
| fn | characteristic_impedance | characteristic_impedance(rho: Float, pwv: Float, area: Float) | hemodynamics | Physiology | -- |
| fn | wave_intensity | wave_intensity(dp: Float, du: Float) | hemodynamics | Physiology | -- |
| fn | wave_intensity_classify | wave_intensity_classify(di: Float) | hemodynamics | Physiology | -- |
| fn | forward_pressure_increment | forward_pressure_increment(dp: Float, rho: Float, c: Float, du: Float) | hemodynamics | Physiology | -- |
| fn | backward_pressure_increment | backward_pressure_increment(dp: Float, rho: Float, c: Float, du: Float) | hemodynamics | Physiology | -- |
| fn | espvr_pressure | espvr_pressure(ees: Float, volume_mL: Float, v0: Float) | hemodynamics | Physiology | -- |
| fn | ees_normal | ees_normal() | hemodynamics | Physiology | -- |
| fn | ees_heart_failure | ees_heart_failure() | hemodynamics | Physiology | -- |
| fn | ees_dobutamine | ees_dobutamine() | hemodynamics | Physiology | -- |
| fn | ees_dilated_cm | ees_dilated_cm() | hemodynamics | Physiology | -- |
| fn | v0_normal | v0_normal() | hemodynamics | Physiology | -- |
| fn | v0_dilated | v0_dilated() | hemodynamics | Physiology | -- |
| fn | edpvr_pressure | edpvr_pressure(a: Float, b: Float, volume_mL: Float, v0: Float) | hemodynamics | Physiology | -- |
| fn | edpvr_normal | edpvr_normal(volume_mL: Float) | hemodynamics | Physiology | -- |
| fn | edpvr_hfpef | edpvr_hfpef(volume_mL: Float) | hemodynamics | Physiology | -- |
| fn | edpvr_restrictive | edpvr_restrictive(volume_mL: Float) | hemodynamics | Physiology | -- |
| fn | edpvr_dilated | edpvr_dilated(volume_mL: Float) | hemodynamics | Physiology | -- |
| fn | effective_arterial_elastance | effective_arterial_elastance(end_systolic_pressure: Float, stroke_volume: Float) | hemodynamics | Physiology | -- |
| fn | ea_normal | ea_normal() | hemodynamics | Physiology | -- |
| fn | ea_hypertension | ea_hypertension() | hemodynamics | Physiology | -- |
| fn | ea_vasodilation | ea_vasodilation() | hemodynamics | Physiology | -- |
| fn | ventricular_arterial_coupling | ventricular_arterial_coupling(ea: Float, ees: Float) | hemodynamics | Physiology | -- |
| fn | va_coupling_classify | va_coupling_classify(ratio: Float) | hemodynamics | Physiology | -- |
| fn | stroke_work | stroke_work(sv_mL: Float, esp: Float, edp: Float) | hemodynamics | Physiology | -- |
| fn | stroke_work_joules | stroke_work_joules(sv_mL: Float, esp: Float, edp: Float) | hemodynamics | Physiology | -- |
| fn | potential_energy | potential_energy(ees: Float, v0: Float, esv: Float, edv: Float, edp: Float) | hemodynamics | Physiology | -- |
| fn | mechanical_efficiency | mechanical_efficiency(stroke_work_val: Float, pva: Float) | hemodynamics | Physiology | -- |
| fn | dpdt_max_normal | dpdt_max_normal() | hemodynamics | Physiology | -- |
| fn | dpdt_max_mild_dysfunction | dpdt_max_mild_dysfunction() | hemodynamics | Physiology | -- |
| fn | dpdt_max_severe_dysfunction | dpdt_max_severe_dysfunction() | hemodynamics | Physiology | -- |
| fn | tau_normal_ms | tau_normal_ms() | hemodynamics | Physiology | -- |
| fn | tau_diastolic_dysfunction_ms | tau_diastolic_dysfunction_ms() | hemodynamics | Physiology | -- |
| fn | tau_severe_ms | tau_severe_ms() | hemodynamics | Physiology | -- |
| fn | isovolumic_relaxation | isovolumic_relaxation(p0: Float, t_ms: Float, tau_ms: Float) | hemodynamics | Physiology | -- |
| fn | continuity_1d_dA_dt | continuity_1d_dA_dt(dQ_dx: Float) | hemodynamics | Physiology | -- |
| fn | momentum_1d_friction_coeff | momentum_1d_friction_coeff(mu: Float, rho: Float) | hemodynamics | Physiology | -- |
| fn | momentum_1d_convective_flux | momentum_1d_convective_flux(alpha: Float, flow: Float, area: Float) | hemodynamics | Physiology | -- |
| fn | momentum_1d_pressure_term | momentum_1d_pressure_term(area: Float, rho: Float, dp_dx: Float) | hemodynamics | Physiology | -- |
| fn | momentum_1d_friction_term | momentum_1d_friction_term(k_f: Float, flow: Float, area: Float) | hemodynamics | Physiology | -- |
| fn | alpha_flat_profile | alpha_flat_profile() | hemodynamics | Physiology | -- |
| fn | alpha_poiseuille | alpha_poiseuille() | hemodynamics | Physiology | -- |
| fn | tube_law_pressure | tube_law_pressure(area: Float, area_ref: Float, beta: Float, p_ext: Float) | hemodynamics | Physiology | -- |
| fn | tube_law_area | tube_law_area(pressure: Float, area_ref: Float, beta: Float, p_ext: Float) | hemodynamics | Physiology | -- |
| fn | tube_law_beta | tube_law_beta(youngs_modulus: Float, wall_thickness: Float, poisson: Float) | hemodynamics | Physiology | -- |
| fn | wave_speed_1d | wave_speed_1d(beta: Float, rho: Float, area_ref: Float, area: Float) | hemodynamics | Physiology | -- |
| fn | junction_mass_balance | junction_mass_balance(q_parent: Float, q_d1: Float, q_d2: Float) | hemodynamics | Physiology | -- |
| fn | junction_total_pressure | junction_total_pressure(static_pressure: Float, rho: Float, velocity: Float) | hemodynamics | Physiology | -- |
| fn | evolve | evolve(&mut self, dt: Duration, flow_in: Float) | hemodynamics | Physiology | -- |
| fn | boundary_pressure | boundary_pressure(&self, flow_in: Float) | hemodynamics | Physiology | -- |
| fn | structured_tree_impedance_note | structured_tree_impedance_note() | hemodynamics | Physiology | -- |
| fn | cfl_1d | cfl_1d(velocity: Float, wave_speed: Float, dx: Float) | hemodynamics | Physiology | -- |
| fn | coupling_3d1d_note | coupling_3d1d_note() | hemodynamics | Physiology | -- |
| fn | flow_rate_bc_note | flow_rate_bc_note() | hemodynamics | Physiology | -- |
| fn | time_varying_elastance | time_varying_elastance(e_t: Float, ees: Float, v: Float, v0: Float, edpvr_val: Float) | hemodynamics | Physiology | -- |
| fn | elastance_double_hill | elastance_double_hill(t: Float, t_es: Float) | hemodynamics | Physiology | -- |
| fn | valve_open | valve_open(upstream_pressure: Float, downstream_pressure: Float) | hemodynamics | Physiology | -- |
| fn | valve_flow | valve_flow(upstream_pressure: Float, downstream_pressure: Float, r_valve: Float, is_open: Bool) | hemodynamics | Physiology | -- |
| fn | venous_pressure | venous_pressure(volume: Float, unstressed_volume: Float, compliance: Float) | hemodynamics | Physiology | -- |
| fn | venous_compliance_systemic | venous_compliance_systemic() | hemodynamics | Physiology | -- |
| fn | venous_compliance_pulmonary | venous_compliance_pulmonary() | hemodynamics | Physiology | -- |
| fn | venous_unstressed_volume | venous_unstressed_volume() | hemodynamics | Physiology | -- |
| fn | laplace_wall_stress | laplace_wall_stress(transmural_pressure: Float, radius: Float, wall_thickness: Float) | hemodynamics | Physiology | -- |
| fn | laplace_wall_stress_sphere | laplace_wall_stress_sphere(transmural_pressure: Float, radius: Float, wall_thickness: Float) | hemodynamics | Physiology | -- |
| fn | compliance | compliance(delta_volume: Float, delta_pressure: Float) | hemodynamics | Physiology | -- |
| fn | distensibility | distensibility(area_change: Float, area_ref: Float, pressure_change: Float) | hemodynamics | Physiology | -- |
| fn | peterson_elastic_modulus | peterson_elastic_modulus(delta_pressure: Float, radius: Float, delta_radius: Float) | hemodynamics | Physiology | -- |
| fn | stiffness_index_beta | stiffness_index_beta(p_sys: Float, p_dia: Float, d_sys: Float, d_dia: Float) | hemodynamics | Physiology | -- |
| fn | incremental_elastic_modulus | incremental_elastic_modulus(ep: Float, radius: Float, wall_thickness: Float) | hemodynamics | Physiology | -- |
| fn | mooney_rivlin_strain_energy | mooney_rivlin_strain_energy(c1: Float, c2: Float, i1: Float, i2: Float) | hemodynamics | Physiology | -- |
| fn | hgo_strain_energy | hgo_strain_energy(c10: Float, k1: Float, k2: Float, kappa: Float, i1: Float, i4: Float) | hemodynamics | Physiology | -- |
| fn | hgo_params_aorta | hgo_params_aorta() | hemodynamics | Physiology | -- |
| fn | hgo_params_carotid | hgo_params_carotid() | hemodynamics | Physiology | -- |
| fn | fung_strain_energy | fung_strain_energy(c: Float, q: Float) | hemodynamics | Physiology | -- |
| fn | fung_q_biaxial | fung_q_biaxial(a1: Float, a2: Float, a4: Float, e11: Float, e22: Float) | hemodynamics | Physiology | -- |
| fn | wall_ratio_aorta | wall_ratio_aorta() | hemodynamics | Physiology | -- |
| fn | wall_ratio_carotid | wall_ratio_carotid() | hemodynamics | Physiology | -- |
| fn | wall_ratio_coronary | wall_ratio_coronary() | hemodynamics | Physiology | -- |
| fn | wall_ratio_cerebral | wall_ratio_cerebral() | hemodynamics | Physiology | -- |
| fn | cardiac_output | cardiac_output(hr_bpm: Float, sv_mL: Float) | hemodynamics | Physiology | -- |
| fn | cardiac_index | cardiac_index(co_L_min: Float, bsa_m2: Float) | hemodynamics | Physiology | -- |
| fn | cardiac_index_classify | cardiac_index_classify(ci: Float) | hemodynamics | Physiology | -- |
| fn | stroke_volume_index | stroke_volume_index(sv_mL: Float, bsa_m2: Float) | hemodynamics | Physiology | -- |
| fn | svr | svr(map: Float, cvp: Float, co_L_min: Float) | hemodynamics | Physiology | -- |
| fn | svr_wood_units | svr_wood_units(map: Float, cvp: Float, co_L_min: Float) | hemodynamics | Physiology | -- |
| fn | svr_classify | svr_classify(svr_dynes: Float) | hemodynamics | Physiology | -- |
| fn | pvr | pvr(mpap: Float, pcwp: Float, co_L_min: Float) | hemodynamics | Physiology | -- |
| fn | pvr_wood_units | pvr_wood_units(mpap: Float, pcwp: Float, co_L_min: Float) | hemodynamics | Physiology | -- |
| fn | pvr_classify | pvr_classify(pvr_wu: Float) | hemodynamics | Physiology | -- |
| fn | lvswi | lvswi(svi: Float, map: Float, pcwp: Float) | hemodynamics | Physiology | -- |
| fn | rvswi | rvswi(svi: Float, mpap: Float, cvp: Float) | hemodynamics | Physiology | -- |
| fn | cardiac_power_output | cardiac_power_output(map: Float, co_L_min: Float) | hemodynamics | Physiology | -- |
| fn | cpo_classify | cpo_classify(cpo: Float) | hemodynamics | Physiology | -- |
| fn | cardiac_power_index | cardiac_power_index(cpo: Float, bsa: Float) | hemodynamics | Physiology | -- |
| fn | fick_cardiac_output | fick_cardiac_output(vo2_mL_min: Float, cao2: Float, cvo2: Float) | hemodynamics | Physiology | -- |
| fn | assumed_vo2 | assumed_vo2(bsa_m2: Float) | hemodynamics | Physiology | -- |
| fn | thermodilution_note | thermodilution_note() | hemodynamics | Physiology | -- |
| fn | transpulmonary_note | transpulmonary_note() | hemodynamics | Physiology | -- |
| fn | shock_index | shock_index(hr: Float, sbp: Float) | hemodynamics | Physiology | -- |
| fn | mean_arterial_pressure | mean_arterial_pressure(sbp: Float, dbp: Float) | hemodynamics | Physiology | -- |
| fn | pulse_pressure | pulse_pressure(sbp: Float, dbp: Float) | hemodynamics | Physiology | -- |
| fn | rate_pressure_product | rate_pressure_product(hr: Float, sbp: Float) | hemodynamics | Physiology | -- |
| fn | coronary_perfusion_pressure | coronary_perfusion_pressure(dbp: Float, lvedp: Float) | hemodynamics | Physiology | -- |
| fn | cpp_classify | cpp_classify(cpp: Float) | hemodynamics | Physiology | -- |
| fn | mmHg_to_Pa | mmHg_to_Pa(mmHg: Float) | hemodynamics | Physiology | -- |
| fn | Pa_to_mmHg | Pa_to_mmHg(pa: Float) | hemodynamics | Physiology | -- |
| fn | mmHg_to_kPa | mmHg_to_kPa(mmHg: Float) | hemodynamics | Physiology | -- |
| fn | kPa_to_mmHg | kPa_to_mmHg(kpa: Float) | hemodynamics | Physiology | -- |
| fn | mmHg_to_cmH2O | mmHg_to_cmH2O(mmHg: Float) | hemodynamics | Physiology | -- |
| fn | cmH2O_to_mmHg | cmH2O_to_mmHg(cmH2O: Float) | hemodynamics | Physiology | -- |
| fn | atm_to_mmHg | atm_to_mmHg(atm: Float) | hemodynamics | Physiology | -- |
| fn | mmHg_to_atm | mmHg_to_atm(mmHg: Float) | hemodynamics | Physiology | -- |
| fn | bar_to_mmHg | bar_to_mmHg(bar: Float) | hemodynamics | Physiology | -- |
| fn | mmHg_to_dyne_cm2 | mmHg_to_dyne_cm2(mmHg: Float) | hemodynamics | Physiology | -- |
| fn | dyne_cm2_to_mmHg | dyne_cm2_to_mmHg(dyne: Float) | hemodynamics | Physiology | -- |
| fn | wood_units_to_dyne_s_cm5 | wood_units_to_dyne_s_cm5(wu: Float) | hemodynamics | Physiology | -- |
| fn | dyne_s_cm5_to_wood_units | dyne_s_cm5_to_wood_units(dyn: Float) | hemodynamics | Physiology | -- |
| fn | wood_units_to_Pa_s_m3 | wood_units_to_Pa_s_m3(wu: Float) | hemodynamics | Physiology | -- |
| fn | cP_to_Pa_s | cP_to_Pa_s(cp: Float) | hemodynamics | Physiology | -- |
| fn | Pa_s_to_cP | Pa_s_to_cP(pa_s: Float) | hemodynamics | Physiology | -- |
| fn | poise_to_Pa_s | poise_to_Pa_s(poise: Float) | hemodynamics | Physiology | -- |
| fn | Pa_s_to_poise | Pa_s_to_poise(pa_s: Float) | hemodynamics | Physiology | -- |
| fn | cP_to_poise | cP_to_poise(cp: Float) | hemodynamics | Physiology | -- |
| fn | mL_s_to_L_min | mL_s_to_L_min(mls: Float) | hemodynamics | Physiology | -- |
| fn | L_min_to_mL_s | L_min_to_mL_s(lpm: Float) | hemodynamics | Physiology | -- |
| fn | mL_s_to_m3_s | mL_s_to_m3_s(mls: Float) | hemodynamics | Physiology | -- |
| fn | m3_s_to_mL_s | m3_s_to_mL_s(m3s: Float) | hemodynamics | Physiology | -- |
| fn | cm_s_to_m_s | cm_s_to_m_s(cms: Float) | hemodynamics | Physiology | -- |
| fn | m_s_to_cm_s | m_s_to_cm_s(ms: Float) | hemodynamics | Physiology | -- |
| fn | cm2_to_m2 | cm2_to_m2(cm2: Float) | hemodynamics | Physiology | -- |
| fn | m2_to_cm2 | m2_to_cm2(m2: Float) | hemodynamics | Physiology | -- |
| fn | mm2_to_cm2 | mm2_to_cm2(mm2: Float) | hemodynamics | Physiology | -- |
| fn | kPa_to_Pa | kPa_to_Pa(kpa: Float) | hemodynamics | Physiology | -- |
| fn | MPa_to_kPa | MPa_to_kPa(mpa: Float) | hemodynamics | Physiology | -- |
| fn | dyne_cm2_to_Pa | dyne_cm2_to_Pa(dyne: Float) | hemodynamics | Physiology | -- |
| fn | Pa_to_dyne_cm2 | Pa_to_dyne_cm2(pa: Float) | hemodynamics | Physiology | -- |
| fn | mL_per_mmHg_to_m3_per_Pa | mL_per_mmHg_to_m3_per_Pa(c: Float) | hemodynamics | Physiology | -- |
| fn | mmHg_s2_per_mL_to_Pa_s2_per_m3 | mmHg_s2_per_mL_to_Pa_s2_per_m3(l: Float) | hemodynamics | Physiology | -- |
| fn | hemodynamics_function_count | hemodynamics_function_count() | hemodynamics | Physiology | -- |
| fn | hemodynamics_struct_count | hemodynamics_struct_count() | hemodynamics | Physiology | -- |
| fn | hemodynamics_temporal_struct_count | hemodynamics_temporal_struct_count() | hemodynamics | Physiology | -- |
| fn | hemodynamics_section_count | hemodynamics_section_count() | hemodynamics | Physiology | -- |
| struct | HemorrhageClass | struct HemorrhageClass | hemorrhagic_shock | Physiology | -- |
| struct | ShockPhase | struct ShockPhase | hemorrhagic_shock | Physiology | -- |
| struct | CompensatoryMechanism | struct CompensatoryMechanism | hemorrhagic_shock | Physiology | -- |
| struct | LethalTriadComponent | struct LethalTriadComponent | hemorrhagic_shock | Physiology | -- |
| struct | VitalSignTrajectory | struct VitalSignTrajectory | hemorrhagic_shock | Physiology | -- |
| struct | Intervention | struct Intervention | hemorrhagic_shock | Physiology | -- |
| struct | PointOfCareParam | struct PointOfCareParam | hemorrhagic_shock | Physiology | -- |
| struct | PredictionTarget | struct PredictionTarget | hemorrhagic_shock | Physiology | -- |
| struct | BloodProduct | struct BloodProduct | hemorrhagic_shock | Physiology | -- |
| struct | Vasopressor | struct Vasopressor | hemorrhagic_shock | Physiology | -- |
| struct | ShockScore | struct ShockScore | hemorrhagic_shock | Physiology | -- |
| struct | CoagulopathyType | struct CoagulopathyType | hemorrhagic_shock | Physiology | -- |
| struct | TemporalDynamic | struct TemporalDynamic | hemorrhagic_shock | Physiology | -- |
| struct | SensorNoiseModel | struct SensorNoiseModel | hemorrhagic_shock | Physiology | -- |
| fn | hclass | hclass(cid: Int, cn: String, blpl: Float, blph: Float, blml: Float, blmh: Float, hrd: String, hrl: Float, hrh: Float, sbp: String, pp: String, rrl: Int, rrh: Int, uo_desc: String, uol: Float, uoh: Float, ms: String, frg: String, sir: String, bdr: String, lr: String, ci: String) | hemorrhagic_shock | Physiology | -- |
| fn | sphase | sphase(pn: String, desc: String, mr: String, copn: Float, svrc: String, lac: String, bd: String, phr: String, rev: Bool, km: String, cs: String, dur: String, ci: String) | hemorrhagic_shock | Physiology | -- |
| fn | cmech | cmech(mn: String, sys: String, ons: Float, pks: Float, dur: Float, mag: String, eff: String, rec: String, pe: String, fm: String, ar: Float, br: Float, ci: String) | hemorrhagic_shock | Physiology | -- |
| fn | ltriad | ltriad(comp: String, tm: Float, ts: Float, u: String, mech: String, syn: String, mc: String, rs: String, ci: String) | hemorrhagic_shock | Physiology | -- |
| fn | vstraj | vstraj(param: String, u: String, nv: Float, c1: Float, c2: Float, c3: Float, c4: Float, hda: Float, hdb: Float, ttd: Float, ili: Bool, pu: String, ci: String) | hemorrhagic_shock | Physiology | -- |
| fn | interv | interv(nm: String, cat: String, mech: String, dose: String, route: String, ons: Float, pes: Float, dur: Float, hl: Float, contra: String, fd: Bool, el: String, tn: String, ci: String) | hemorrhagic_shock | Physiology | -- |
| fn | poc | poc(param: String, mm: String, nr: String, st: String, fd: Bool, ncv: Float, lat: Float, ui: Float, cu: String, ci: String) | hemorrhagic_shock | Physiology | -- |
| fn | ptarget | ptarget(tn: String, hm: Float, inf: String, ot: String, ca: String, ar: String, dp: String, ci: String) | hemorrhagic_shock | Physiology | -- |
| fn | bprod | bprod(pn: String, vol: Float, stc: String, sl: String, ac: String, de: String, tt: String, roa: String, comp: String, fa: Bool, ci: String) | hemorrhagic_shock | Physiology | -- |
| fn | vpressor | vpressor(dn: String, rp: String, dr: String, ons: Float, hl: Float, pe: String, coe: String, svre: String, re: String, contra: String, ci: String) | hemorrhagic_shock | Physiology | -- |
| fn | sscore | sscore(sn: String, f: String, nr: String, st: String, ss: String, comp: String, vp: String, sens: Float, spec: Float, ci: String) | hemorrhagic_shock | Physiology | -- |
| fn | coag_type | coag_type(tn: String, mech: String, lf: String, trig: String, tx: String, mi: String, ci: String) | hemorrhagic_shock | Physiology | -- |
| fn | tdyn | tdyn(param: String, mt: String, ar: Float, br: Float, ss: Float, tc: Float, eq: String, ci: String) | hemorrhagic_shock | Physiology | -- |
| fn | snoise | snoise(st: String, env: String, ncv: Float, as_str: String, mit: String, msr: Float, ci: String) | hemorrhagic_shock | Physiology | -- |
| fn | total_blood_volume_ml | total_blood_volume_ml() | hemorrhagic_shock | Physiology | -- |
| fn | blood_volume_ml_per_kg | blood_volume_ml_per_kg() | hemorrhagic_shock | Physiology | -- |
| fn | normal_cardiac_output_l_min | normal_cardiac_output_l_min() | hemorrhagic_shock | Physiology | -- |
| fn | normal_heart_rate | normal_heart_rate() | hemorrhagic_shock | Physiology | -- |
| fn | normal_systolic_bp | normal_systolic_bp() | hemorrhagic_shock | Physiology | -- |
| fn | normal_diastolic_bp | normal_diastolic_bp() | hemorrhagic_shock | Physiology | -- |
| fn | normal_map | normal_map() | hemorrhagic_shock | Physiology | -- |
| fn | normal_svr_dyn_s_cm5 | normal_svr_dyn_s_cm5() | hemorrhagic_shock | Physiology | -- |
| fn | normal_cvp_mmhg | normal_cvp_mmhg() | hemorrhagic_shock | Physiology | -- |
| fn | normal_lactate_mmol_l | normal_lactate_mmol_l() | hemorrhagic_shock | Physiology | -- |
| fn | normal_base_excess | normal_base_excess() | hemorrhagic_shock | Physiology | -- |
| fn | normal_ph | normal_ph() | hemorrhagic_shock | Physiology | -- |
| fn | normal_hemoglobin_g_dl | normal_hemoglobin_g_dl() | hemorrhagic_shock | Physiology | -- |
| fn | normal_hematocrit_pct | normal_hematocrit_pct() | hemorrhagic_shock | Physiology | -- |
| fn | normal_platelet_count_k_ul | normal_platelet_count_k_ul() | hemorrhagic_shock | Physiology | -- |
| fn | normal_fibrinogen_mg_dl | normal_fibrinogen_mg_dl() | hemorrhagic_shock | Physiology | -- |
| fn | normal_inr | normal_inr() | hemorrhagic_shock | Physiology | -- |
| fn | normal_ptt_seconds | normal_ptt_seconds() | hemorrhagic_shock | Physiology | -- |
| fn | normal_svo2_pct | normal_svo2_pct() | hemorrhagic_shock | Physiology | -- |
| fn | normal_scvo2_pct | normal_scvo2_pct() | hemorrhagic_shock | Physiology | -- |
| fn | normal_temperature_c | normal_temperature_c() | hemorrhagic_shock | Physiology | -- |
| fn | normal_urine_output_ml_hr | normal_urine_output_ml_hr() | hemorrhagic_shock | Physiology | -- |
| fn | normal_respiratory_rate | normal_respiratory_rate() | hemorrhagic_shock | Physiology | -- |
| fn | normal_spo2_pct | normal_spo2_pct() | hemorrhagic_shock | Physiology | -- |
| fn | nca_gate | nca_gate(x: Float) | hemorrhagic_shock | Physiology | -- |
| fn | hh_alpha | hh_alpha(v: Float, a: Float, v_half: Float, k: Float) | hemorrhagic_shock | Physiology | -- |
| fn | hh_beta | hh_beta(v: Float, b: Float, v_half: Float, k: Float) | hemorrhagic_shock | Physiology | -- |
| fn | hh_steady_state | hh_steady_state(alpha: Float, beta: Float) | hemorrhagic_shock | Physiology | -- |
| fn | hh_time_constant | hh_time_constant(alpha: Float, beta: Float) | hemorrhagic_shock | Physiology | -- |
| fn | hh_gate_at_time | hh_gate_at_time(n_inf: Float, n_0: Float, tau: Float, t: Float) | hemorrhagic_shock | Physiology | -- |
| fn | map_trajectory | map_trajectory(map_0: Float, map_floor: Float, alpha_rate: Float, t_seconds: Float) | hemorrhagic_shock | Physiology | -- |
| fn | hr_compensatory | hr_compensatory(hr_baseline: Float, hr_max: Float, alpha_rate: Float, t_seconds: Float, t_onset: Float) | hemorrhagic_shock | Physiology | -- |
| fn | lactate_trajectory | lactate_trajectory(l_0: Float, l_max: Float, beta_rate: Float, t_seconds: Float) | hemorrhagic_shock | Physiology | -- |
| fn | base_deficit_trajectory | base_deficit_trajectory(bd_0: Float, rate: Float, k: Float, t_seconds: Float) | hemorrhagic_shock | Physiology | -- |
| fn | compensatory_reserve_index | compensatory_reserve_index(blood_loss_fraction: Float) | hemorrhagic_shock | Physiology | -- |
| fn | urine_output_trajectory | urine_output_trajectory(uo_0: Float, alpha_rate: Float, t_seconds: Float) | hemorrhagic_shock | Physiology | -- |
| fn | svo2_trajectory | svo2_trajectory(svo2_0: Float, svo2_floor: Float, alpha_rate: Float, t_seconds: Float) | hemorrhagic_shock | Physiology | -- |
| fn | shock_index | shock_index(hr: Float, sbp: Float) | hemorrhagic_shock | Physiology | -- |
| fn | modified_shock_index | modified_shock_index(hr: Float, map_val: Float) | hemorrhagic_shock | Physiology | -- |
| fn | pulse_pressure | pulse_pressure(sbp: Float, dbp: Float) | hemorrhagic_shock | Physiology | -- |
| fn | mean_arterial_pressure | mean_arterial_pressure(sbp: Float, dbp: Float) | hemorrhagic_shock | Physiology | -- |
| fn | estimated_blood_loss_from_bd | estimated_blood_loss_from_bd(base_deficit: Float, body_weight_kg: Float) | hemorrhagic_shock | Physiology | -- |
| fn | oxygen_content | oxygen_content(hgb: Float, sao2_fraction: Float, pao2: Float) | hemorrhagic_shock | Physiology | -- |
| fn | oxygen_delivery | oxygen_delivery(cardiac_output_l_min: Float, cao2: Float) | hemorrhagic_shock | Physiology | -- |
| fn | oxygen_consumption | oxygen_consumption(cardiac_output_l_min: Float, cao2: Float, cvo2: Float) | hemorrhagic_shock | Physiology | -- |
| fn | oxygen_extraction_ratio | oxygen_extraction_ratio(cao2: Float, cvo2: Float) | hemorrhagic_shock | Physiology | -- |
| fn | critical_do2_ml_min_m2 | critical_do2_ml_min_m2() | hemorrhagic_shock | Physiology | -- |
| fn | lookup_hemorrhage_class | lookup_hemorrhage_class(class_id: Int) | hemorrhagic_shock | Physiology | -- |
| fn | estimated_blood_volume | estimated_blood_volume(body_weight_kg: Float, age_category: String) | hemorrhagic_shock | Physiology | -- |
| fn | allowable_blood_loss | allowable_blood_loss(ebv_ml: Float, hct_initial: Float, hct_minimum: Float) | hemorrhagic_shock | Physiology | -- |
| fn | lookup_shock_phase | lookup_shock_phase(phase: String) | hemorrhagic_shock | Physiology | -- |
| fn | lookup_compensatory_mechanism | lookup_compensatory_mechanism(name: String) | hemorrhagic_shock | Physiology | -- |
| fn | lookup_lethal_triad | lookup_lethal_triad(component: String) | hemorrhagic_shock | Physiology | -- |
| fn | lethal_triad_mortality_multiplier | lethal_triad_mortality_multiplier(temp_c: Float, ph: Float, inr: Float) | hemorrhagic_shock | Physiology | -- |
| fn | hypo_risk | hypo_risk(t: Float) | hemorrhagic_shock | Physiology | -- |
| fn | acid_risk | acid_risk(p: Float) | hemorrhagic_shock | Physiology | -- |
| fn | coag_risk | coag_risk(i: Float) | hemorrhagic_shock | Physiology | -- |
| fn | lookup_coagulopathy | lookup_coagulopathy(type_name: String) | hemorrhagic_shock | Physiology | -- |
| fn | lookup_vital_trajectory | lookup_vital_trajectory(parameter: String) | hemorrhagic_shock | Physiology | -- |
| fn | lookup_shock_score | lookup_shock_score(name: String) | hemorrhagic_shock | Physiology | -- |
| fn | lookup_intervention | lookup_intervention(name: String) | hemorrhagic_shock | Physiology | -- |
| fn | lookup_blood_product | lookup_blood_product(name: String) | hemorrhagic_shock | Physiology | -- |
| fn | proppr_ratio_units | proppr_ratio_units(prbc_units: Int) | hemorrhagic_shock | Physiology | -- |
| fn | massive_transfusion_trigger | massive_transfusion_trigger(si: Float, abc_score: Int, mechanism: String) | hemorrhagic_shock | Physiology | -- |
| fn | lookup_vasopressor | lookup_vasopressor(drug: String) | hemorrhagic_shock | Physiology | -- |
| fn | lookup_temporal_dynamic | lookup_temporal_dynamic(parameter: String) | hemorrhagic_shock | Physiology | -- |
| fn | lookup_poc_parameter | lookup_poc_parameter(param: String) | hemorrhagic_shock | Physiology | -- |
| fn | lookup_sensor_noise | lookup_sensor_noise(sensor: String) | hemorrhagic_shock | Physiology | -- |
| fn | lookup_prediction_target | lookup_prediction_target(target: String) | hemorrhagic_shock | Physiology | -- |
| fn | battlefield_hemorrhage_death_rate | battlefield_hemorrhage_death_rate() | hemorrhagic_shock | Physiology | -- |
| fn | hemorrhage_as_cause_of_preventable_death | hemorrhage_as_cause_of_preventable_death() | hemorrhagic_shock | Physiology | -- |
| fn | extremity_hemorrhage_preventable_pct | extremity_hemorrhage_preventable_pct() | hemorrhagic_shock | Physiology | -- |
| fn | junctional_hemorrhage_preventable_pct | junctional_hemorrhage_preventable_pct() | hemorrhagic_shock | Physiology | -- |
| fn | truncal_hemorrhage_preventable_pct | truncal_hemorrhage_preventable_pct() | hemorrhagic_shock | Physiology | -- |
| fn | golden_hour_survival_benefit | golden_hour_survival_benefit() | hemorrhagic_shock | Physiology | -- |
| fn | resuscitation_endpoint | resuscitation_endpoint(target: String) | hemorrhagic_shock | Physiology | -- |
| fn | classify_hemorrhage_from_vitals | classify_hemorrhage_from_vitals(hr: Float, sbp: Float, rr: Int, uo_ml_hr: Float, gcs: Int, base_deficit: Float) | hemorrhagic_shock | Physiology | -- |
| fn | lethal_triad_score | lethal_triad_score(temp_c: Float, ph: Float, inr: Float) | hemorrhagic_shock | Physiology | -- |
| fn | score_val | score_val() | hemorrhagic_shock | Physiology | -- |
| fn | intervention_priority | intervention_priority(hemorrhage_class: Int, extremity_wound: Bool, time_since_injury_min: Float) | hemorrhagic_shock | Physiology | -- |
| fn | estimated_time_to_decompensation_min | estimated_time_to_decompensation_min(si_current: Float, si_5min_ago: Float, lactate_current: Float) | hemorrhagic_shock | Physiology | -- |
| fn | vital_hemorrhage_assessment | vital_hemorrhage_assessment(hr: Float, sbp: Float, dbp: Float, rr: Int, spo2: Float, temp_c: Float, gcs: Int, lactate: Float, base_deficit: Float, inr: Float, hgb: Float) | hemorrhagic_shock | Physiology | -- |
| fn | population_modifier | population_modifier(population: String) | hemorrhagic_shock | Physiology | -- |
| fn | dcr_principle | dcr_principle(principle: String) | hemorrhagic_shock | Physiology | -- |
| fn | critical_threshold | critical_threshold(parameter: String) | hemorrhagic_shock | Physiology | -- |
| struct | NYHAClass | struct NYHAClass | heart_failure | Physiology | -- |
| struct | ACCAHAStage | struct ACCAHAStage | heart_failure | Physiology | -- |
| struct | EjectionFractionClass | struct EjectionFractionClass | heart_failure | Physiology | -- |
| struct | INTERMACSProfile | struct INTERMACSProfile | heart_failure | Physiology | -- |
| struct | CardiacParameter | struct CardiacParameter | heart_failure | Physiology | -- |
| struct | BiomarkerEntry | struct BiomarkerEntry | heart_failure | Physiology | -- |
| struct | NeurohormoneEntry | struct NeurohormoneEntry | heart_failure | Physiology | -- |
| struct | RemodelingEntry | struct RemodelingEntry | heart_failure | Physiology | -- |
| struct | LVDimension | struct LVDimension | heart_failure | Physiology | -- |
| struct | HFMedication | struct HFMedication | heart_failure | Physiology | -- |
| struct | MechanicalSupport | struct MechanicalSupport | heart_failure | Physiology | -- |
| struct | PrognosticModel | struct PrognosticModel | heart_failure | Physiology | -- |
| struct | StageTransition | struct StageTransition | heart_failure | Physiology | -- |
| struct | DecompensationTrigger | struct DecompensationTrigger | heart_failure | Physiology | -- |
| struct | DARPAMetric | struct DARPAMetric | heart_failure | Physiology | -- |
| struct | DiureticEntry | struct DiureticEntry | heart_failure | Physiology | -- |
| struct | InotropeEntry | struct InotropeEntry | heart_failure | Physiology | -- |
| struct | TransplantCriteria | struct TransplantCriteria | heart_failure | Physiology | -- |
| fn | nyha | nyha(cn: Int, l: String, s: String, ec: String, pv: String, m1: Float, m5: Float, ci: String) | heart_failure | Physiology | -- |
| fn | stage | stage(st: String, l: String, d: String, ex: String, pn: String, ci: String) | heart_failure | Physiology | -- |
| fn | ef_class | ef_class(cn: String, ab: String, el: Float, eu: Float, pp: String, eb: String, ci: String) | heart_failure | Physiology | -- |
| fn | intermacs | intermacs(pn: Int, l: String, d: String, tf: String, hs: String, surv: Float, ci: String) | heart_failure | Physiology | -- |
| fn | cparam | cparam(n: String, u: String, nl: Float, nh: Float, ht: Float, mm: String, cs: String, ci: String) | heart_failure | Physiology | -- |
| fn | biomarker | biomarker(n: String, u: String, nc: Float, hc: Float, gl: Float, gh: Float, aa: String, cf: String, pv: String, ci: String) | heart_failure | Physiology | -- |
| fn | neurohormone | neurohormone(sn: String, med: String, rec: String, eff: String, cm: String, tt: String, ci: String) | heart_failure | Physiology | -- |
| fn | remodel | remodel(rt: String, st: String, sp: String, gc: String, wt: String, cs: String, mm: String, rv: String, ci: String) | heart_failure | Physiology | -- |
| fn | lvdim | lvdim(pn: String, u: String, nml: Float, nmh: Float, nfl: Float, nfh: Float, mild: Float, sev: Float, ci: String) | heart_failure | Physiology | -- |
| fn | hfmed | hfmed(dc: String, dn: String, mech: String, sd: String, td: String, efi: Float, mr: Float, nnt: Float, hr: Float, contra: String, lt: String, ci: String) | heart_failure | Physiology | -- |
| fn | mechsupport | mechsupport(dn: String, dt: String, mech: String, fr: String, he: String, ind: String, comp: String, ci: String) | heart_failure | Physiology | -- |
| fn | progmodel | progmodel(mn: String, v: String, cs: Float, vc: String, om: String, ci: String) | heart_failure | Physiology | -- |
| fn | transition | transition(fs: String, ts: String, ar: Float, rf: String, pi: String, ci: String) | heart_failure | Physiology | -- |
| fn | trigger | trigger(tn: String, mech: String, fp: Float, prev: String, ci: String) | heart_failure | Physiology | -- |
| fn | darpa_metric | darpa_metric(mn: String, d: String, tv: String, mm: String, pb: String, ci: String) | heart_failure | Physiology | -- |
| fn | diuretic | diuretic(dn: String, dc: String, mech: String, oral: String, iv: String, onset: String, dur: String, ceil: String, pot: Float, elec: String, ci: String) | heart_failure | Physiology | -- |
| fn | inotrope | inotrope(dn: String, mech: String, dr: String, he: String, hre: String, ar: String, me: String, ci: String) | heart_failure | Physiology | -- |
| fn | transplant_criterion | transplant_criterion(cr: String, th: String, rat: String, ur: String, ci: String) | heart_failure | Physiology | -- |
| fn | nyha_class | nyha_class(class_num: Int) | heart_failure | Physiology | -- |
| fn | acc_aha_stage | acc_aha_stage(s: String) | heart_failure | Physiology | -- |
| fn | ef_classification | ef_classification(name: String) | heart_failure | Physiology | -- |
| fn | intermacs_profile | intermacs_profile(p: Int) | heart_failure | Physiology | -- |
| fn | cardiac_param | cardiac_param(name: String) | heart_failure | Physiology | -- |
| fn | compute_cpo | compute_cpo(map_mmhg: Float, co_lmin: Float) | heart_failure | Physiology | -- |
| fn | compute_ci | compute_ci(co_lmin: Float, bsa_m2: Float) | heart_failure | Physiology | -- |
| fn | compute_svr | compute_svr(map_mmhg: Float, cvp_mmhg: Float, co_lmin: Float) | heart_failure | Physiology | -- |
| fn | compute_pvr | compute_pvr(mpap_mmhg: Float, pcwp_mmhg: Float, co_lmin: Float) | heart_failure | Physiology | -- |
| fn | compute_va_coupling | compute_va_coupling(ea: Float, ees: Float) | heart_failure | Physiology | -- |
| fn | compute_ea | compute_ea(sbp_mmhg: Float, sv_ml: Float) | heart_failure | Physiology | -- |
| fn | compute_ef | compute_ef(edv_ml: Float, esv_ml: Float) | heart_failure | Physiology | -- |
| fn | compute_sv | compute_sv(edv_ml: Float, esv_ml: Float) | heart_failure | Physiology | -- |
| fn | compute_stroke_work | compute_stroke_work(sv_ml: Float, map_mmhg: Float, pcwp_mmhg: Float) | heart_failure | Physiology | -- |
| fn | compute_tpg | compute_tpg(mpap_mmhg: Float, pcwp_mmhg: Float) | heart_failure | Physiology | -- |
| fn | compute_dpti | compute_dpti(dbp_mmhg: Float, lvedp_mmhg: Float, diastolic_time_s: Float) | heart_failure | Physiology | -- |
| fn | compute_spti | compute_spti(sbp_mmhg: Float, systolic_time_s: Float) | heart_failure | Physiology | -- |
| fn | compute_buckberg | compute_buckberg(dpti: Float, spti: Float) | heart_failure | Physiology | -- |
| fn | nca_gate | nca_gate(x: Float) | heart_failure | Physiology | -- |
| fn | severity_gate | severity_gate(x_val: Float, x_normal: Float, x_severe: Float) | heart_failure | Physiology | -- |
| fn | hh_alpha_rate | hh_alpha_rate(v: Float, v_half: Float, k: Float) | heart_failure | Physiology | -- |
| fn | hh_beta_rate | hh_beta_rate(v: Float, v_half: Float, k: Float) | heart_failure | Physiology | -- |
| fn | hh_steady_state | hh_steady_state(alpha: Float, beta: Float) | heart_failure | Physiology | -- |
| fn | hh_time_constant | hh_time_constant(alpha: Float, beta: Float) | heart_failure | Physiology | -- |
| fn | ees_decay | ees_decay(ees_initial: Float, time_months: Float, tau_months: Float) | heart_failure | Physiology | -- |
| fn | ef_trajectory | ef_trajectory(ef_initial: Float, time_months: Float, decline_rate: Float, gdmt_factor: Float) | heart_failure | Physiology | -- |
| fn | natriuretic_peptide | natriuretic_peptide(name: String) | heart_failure | Physiology | -- |
| fn | bnp_hf_probability | bnp_hf_probability(bnp_pgml: Float) | heart_failure | Physiology | -- |
| fn | ntprobnp_hf_probability | ntprobnp_hf_probability(ntprobnp_pgml: Float, age_years: Int) | heart_failure | Physiology | -- |
| fn | biomarker_change_significant | biomarker_change_significant(baseline: Float, current: Float) | heart_failure | Physiology | -- |
| fn | neurohormonal_system | neurohormonal_system(name: String) | heart_failure | Physiology | -- |
| fn | remodeling_type | remodeling_type(name: String) | heart_failure | Physiology | -- |
| fn | lv_dimension | lv_dimension(param: String) | heart_failure | Physiology | -- |
| fn | compute_rwt | compute_rwt(pwd_mm: Float, lvedd_mm: Float) | heart_failure | Physiology | -- |
| fn | compute_lv_mass | compute_lv_mass(lvedd_mm: Float, ivsd_mm: Float, pwd_mm: Float) | heart_failure | Physiology | -- |
| fn | compute_lv_mass_index | compute_lv_mass_index(lv_mass_g: Float, bsa_m2: Float) | heart_failure | Physiology | -- |
| fn | compute_wall_stress | compute_wall_stress(pressure_mmhg: Float, radius_cm: Float, thickness_cm: Float) | heart_failure | Physiology | -- |
| fn | lv_geometry | lv_geometry(rwt: Float, lv_mass_index: Float, sex: String) | heart_failure | Physiology | -- |
| fn | hf_med | hf_med(name: String) | heart_failure | Physiology | -- |
| fn | hf_diuretic | hf_diuretic(name: String) | heart_failure | Physiology | -- |
| fn | hf_inotrope | hf_inotrope(name: String) | heart_failure | Physiology | -- |
| fn | mechanical_support_device | mechanical_support_device(name: String) | heart_failure | Physiology | -- |
| fn | transplant_listing | transplant_listing(criterion: String) | heart_failure | Physiology | -- |
| fn | unos_status | unos_status(status: Int) | heart_failure | Physiology | -- |
| fn | stage_transition | stage_transition(from: String, to: String) | heart_failure | Physiology | -- |
| fn | readmission_stats | readmission_stats() | heart_failure | Physiology | -- |
| fn | decompensation_trigger | decompensation_trigger(name: String) | heart_failure | Physiology | -- |
| fn | hf_prognostic_model | hf_prognostic_model(name: String) | heart_failure | Physiology | -- |
| fn | annual_mortality_by_nyha | annual_mortality_by_nyha(class_num: Int) | heart_failure | Physiology | -- |
| fn | admission_sbp_mortality | admission_sbp_mortality(sbp: Float) | heart_failure | Physiology | -- |
| fn | darpa_vital_metric | darpa_vital_metric(name: String) | heart_failure | Physiology | -- |
| fn | predict_stage_d | predict_stage_d(ef_pct: Float, bnp_pgml: Float, gfr_mlmin: Float, hosp_past_year: Int, nyha_class: Int, days_since_stage_c: Float) | heart_failure | Physiology | -- |
| fn | predict_ef_response | predict_ef_response(drug_class: String, baseline_ef: Float, months_on_therapy: Float) | heart_failure | Physiology | -- |
| fn | predict_quadruple_therapy_ef | predict_quadruple_therapy_ef(baseline_ef: Float, months: Float) | heart_failure | Physiology | -- |
| fn | predict_bnp_trajectory | predict_bnp_trajectory(baseline_bnp: Float, months_on_gdmt: Float, num_gdmt_classes: Int) | heart_failure | Physiology | -- |
| fn | decompensation_risk_from_weight | decompensation_risk_from_weight(weight_change_3d_kg: Float) | heart_failure | Physiology | -- |
| fn | heart_rate_reserve | heart_rate_reserve(peak_hr: Float, resting_hr: Float, age_years: Int) | heart_failure | Physiology | -- |
| fn | chronotropic_incompetence | chronotropic_incompetence(hrr: Float) | heart_failure | Physiology | -- |
| fn | forrester_profile | forrester_profile(ci: Float, pcwp: Float) | heart_failure | Physiology | -- |
| fn | clinical_profile | clinical_profile(warm: Int, wet: Int) | heart_failure | Physiology | -- |
| fn | icd_indication | icd_indication(ef_pct: Float, nyha_class: Int, etiology: String, qrs_ms: Int) | heart_failure | Physiology | -- |
| fn | crt_indication | crt_indication(ef_pct: Float, qrs_ms: Int, qrs_morphology: String, nyha_class: Int) | heart_failure | Physiology | -- |
| fn | iron_deficiency_hf | iron_deficiency_hf(ferritin: Float, tsat_pct: Float) | heart_failure | Physiology | -- |
| fn | hyponatremia_hf | hyponatremia_hf(sodium_meql: Float) | heart_failure | Physiology | -- |
| fn | cardiac_rehab_hf | cardiac_rehab_hf() | heart_failure | Physiology | -- |
| fn | full_hf_assessment | full_hf_assessment(ef_pct: Float, nyha_class: Int, bnp_pgml: Float, stage: String, ci: Float, pcwp: Float) | heart_failure | Physiology | -- |
| fn | gdmt_completeness | gdmt_completeness(on_arni_or_acei: Int, on_bb: Int, on_mra: Int, on_sglt2i: Int) | heart_failure | Physiology | -- |
| fn | gdmt_optimization_score | gdmt_optimization_score(arni_pct_target: Float, bb_pct_target: Float, mra_pct_target: Float, sglt2i_pct_target: Float) | heart_failure | Physiology | -- |
| fn | darpa_composite_risk | darpa_composite_risk(ef_pct: Float, bnp_pgml: Float, na_meql: Float, gfr_mlmin: Float, nyha_class: Int, hospitalizations_1yr: Int, gdmt_classes: Int, age_years: Int) | heart_failure | Physiology | -- |
| fn | predict_months_to_next_hospitalization | predict_months_to_next_hospitalization(composite_risk: Float) | heart_failure | Physiology | -- |
| fn | scd_vs_pump_failure_ratio | scd_vs_pump_failure_ratio(nyha_class: Int) | heart_failure | Physiology | -- |
| fn | cardiorenal_syndrome_type | cardiorenal_syndrome_type(type_num: Int) | heart_failure | Physiology | -- |
| fn | cardiomyopathy_etiology | cardiomyopathy_etiology(name: String) | heart_failure | Physiology | -- |
| fn | gdmt_initiation_priority | gdmt_initiation_priority(sbp: Float, hr: Float, gfr: Float, k: Float) | heart_failure | Physiology | -- |
| fn | hf_special_population | hf_special_population(population: String) | heart_failure | Physiology | -- |
| fn | monitoring_schedule | monitoring_schedule() | heart_failure | Physiology | -- |
| fn | lab_monitoring_after_raas_initiation | lab_monitoring_after_raas_initiation() | heart_failure | Physiology | -- |
| fn | palliative_care_triggers | palliative_care_triggers() | heart_failure | Physiology | -- |
| fn | hospice_criteria_hf | hospice_criteria_hf() | heart_failure | Physiology | -- |
| fn | biomarker_guided_therapy | biomarker_guided_therapy() | heart_failure | Physiology | -- |
| fn | remote_monitoring_device | remote_monitoring_device(name: String) | heart_failure | Physiology | -- |
| fn | compute_map | compute_map(sbp: Float, dbp: Float) | heart_failure | Physiology | -- |
| fn | compute_pulse_pressure | compute_pulse_pressure(sbp: Float, dbp: Float) | heart_failure | Physiology | -- |
| fn | compute_proportional_pp | compute_proportional_pp(sbp: Float, dbp: Float) | heart_failure | Physiology | -- |
| fn | compute_fick_co | compute_fick_co(vo2_mlmin: Float, cao2_mldl: Float, cvo2_mldl: Float) | heart_failure | Physiology | -- |
| fn | compute_o2_content | compute_o2_content(hgb_gdl: Float, sao2_pct: Float, pao2_mmhg: Float) | heart_failure | Physiology | -- |
| fn | estimated_vo2 | estimated_vo2(bsa_m2: Float) | heart_failure | Physiology | -- |
| fn | compute_rvswi | compute_rvswi(mpap: Float, rap: Float, svi: Float) | heart_failure | Physiology | -- |
| fn | compute_lvswi | compute_lvswi(map_val: Float, pcwp: Float, svi: Float) | heart_failure | Physiology | -- |
| fn | compute_svi | compute_svi(sv_ml: Float, bsa_m2: Float) | heart_failure | Physiology | -- |
| fn | compute_cpi | compute_cpi(cpo_watts: Float, bsa_m2: Float) | heart_failure | Physiology | -- |
| fn | compute_diastolic_time | compute_diastolic_time(hr: Float) | heart_failure | Physiology | -- |
| fn | compute_rpp | compute_rpp(hr: Float, sbp: Float) | heart_failure | Physiology | -- |
| struct | CardiacIonConcentration | struct CardiacIonConcentration | cardiac_electrophysiology | Physiology | -- |
| fn | cardiac_ion | cardiac_ion(i: String, ec: Float, ic: Float, n: Float, v: Int, ch: String, cn: String, ci: String) | cardiac_electrophysiology | Physiology | -- |
| fn | cardiac_sodium | cardiac_sodium() | cardiac_electrophysiology | Physiology | -- |
| fn | cardiac_potassium | cardiac_potassium() | cardiac_electrophysiology | Physiology | -- |
| fn | cardiac_calcium | cardiac_calcium() | cardiac_electrophysiology | Physiology | -- |
| fn | cardiac_chloride | cardiac_chloride() | cardiac_electrophysiology | Physiology | -- |
| fn | lookup_cardiac_ion | lookup_cardiac_ion(ion: String) | cardiac_electrophysiology | Physiology | -- |
| fn | cardiac_nernst | cardiac_nernst(ion_out: Float, ion_in: Float, valence: Int) | cardiac_electrophysiology | Physiology | -- |
| struct | CardiacAPPhase | struct CardiacAPPhase | cardiac_electrophysiology | Physiology | -- |
| fn | ap_cardiac | ap_cardiac(p: Int, nm: String, vs: Float, ve: Float, dur: String, dc: String, cg: String, cp: String, mech: String, cr: String, ci: String) | cardiac_electrophysiology | Physiology | -- |
| fn | phase_0 | phase_0() | cardiac_electrophysiology | Physiology | -- |
| fn | phase_1 | phase_1() | cardiac_electrophysiology | Physiology | -- |
| fn | phase_2 | phase_2() | cardiac_electrophysiology | Physiology | -- |
| fn | phase_3 | phase_3() | cardiac_electrophysiology | Physiology | -- |
| fn | phase_4 | phase_4() | cardiac_electrophysiology | Physiology | -- |
| fn | lookup_cardiac_phase | lookup_cardiac_phase(phase: Int) | cardiac_electrophysiology | Physiology | -- |
| fn | evolve | evolve(&mut self, dt: Duration, v: Float) | cardiac_electrophysiology | Physiology | -- |
| fn | conductance | conductance(&self) | cardiac_electrophysiology | Physiology | -- |
| fn | current | current(&self, v: Float) | cardiac_electrophysiology | Physiology | -- |
| fn | is_available | is_available(&self) | cardiac_electrophysiology | Physiology | -- |
| fn | recovery_fraction | recovery_fraction(&self) | cardiac_electrophysiology | Physiology | -- |
| fn | evolve | evolve(&mut self, dt: Duration, v: Float, ca_i: Float) | cardiac_electrophysiology | Physiology | -- |
| fn | conductance | conductance(&self) | cardiac_electrophysiology | Physiology | -- |
| fn | current | current(&self, v: Float) | cardiac_electrophysiology | Physiology | -- |
| fn | cicr_trigger | cicr_trigger(&self) | cardiac_electrophysiology | Physiology | -- |
| fn | evolve | evolve(&mut self, dt: Duration, v: Float) | cardiac_electrophysiology | Physiology | -- |
| fn | inward_rectification | inward_rectification(&self, v: Float) | cardiac_electrophysiology | Physiology | -- |
| fn | conductance | conductance(&self, v: Float) | cardiac_electrophysiology | Physiology | -- |
| fn | current | current(&self, v: Float) | cardiac_electrophysiology | Physiology | -- |
| fn | herg_block_fraction | herg_block_fraction(drug_conc: Float, ic50: Float) | cardiac_electrophysiology | Physiology | -- |
| fn | evolve | evolve(&mut self, dt: Duration, v: Float) | cardiac_electrophysiology | Physiology | -- |
| fn | conductance | conductance(&self) | cardiac_electrophysiology | Physiology | -- |
| fn | current | current(&self, v: Float) | cardiac_electrophysiology | Physiology | -- |
| fn | beta_adrenergic_enhancement | beta_adrenergic_enhancement(&self, iso_conc: Float) | cardiac_electrophysiology | Physiology | -- |
| fn | steady_state | steady_state(&self, v: Float, ko: Float) | cardiac_electrophysiology | Physiology | -- |
| fn | current | current(&self, v: Float, ko: Float) | cardiac_electrophysiology | Physiology | -- |
| fn | resting_potential | resting_potential(&self, ko: Float) | cardiac_electrophysiology | Physiology | -- |
| fn | evolve | evolve(&mut self, dt: Duration, v: Float) | cardiac_electrophysiology | Physiology | -- |
| fn | conductance | conductance(&self) | cardiac_electrophysiology | Physiology | -- |
| fn | conductance_layer | conductance_layer(&self, layer: String) | cardiac_electrophysiology | Physiology | -- |
| fn | current | current(&self, v: Float) | cardiac_electrophysiology | Physiology | -- |
| fn | evolve | evolve(&mut self, dt: Duration, v: Float) | cardiac_electrophysiology | Physiology | -- |
| fn | conductance | conductance(&self) | cardiac_electrophysiology | Physiology | -- |
| fn | current | current(&self, v: Float) | cardiac_electrophysiology | Physiology | -- |
| fn | ivabradine_block | ivabradine_block(&self, drug_conc: Float) | cardiac_electrophysiology | Physiology | -- |
| fn | depolarization_rate | depolarization_rate(&self, v: Float) | cardiac_electrophysiology | Physiology | -- |
| fn | evolve | evolve(&mut self, dt: Duration, v: Float) | cardiac_electrophysiology | Physiology | -- |
| fn | conductance | conductance(&self) | cardiac_electrophysiology | Physiology | -- |
| fn | current | current(&self, v: Float) | cardiac_electrophysiology | Physiology | -- |
| struct | ConductionNode | struct ConductionNode | cardiac_electrophysiology | Physiology | -- |
| fn | cnode | cnode(nm: String, ab: String, ir: String, cv: Float, dc: String, apd: Float, up: Float, rp: Float, th: Float, cn: String, ci: String) | cardiac_electrophysiology | Physiology | -- |
| fn | sa_node | sa_node() | cardiac_electrophysiology | Physiology | -- |
| fn | av_node | av_node() | cardiac_electrophysiology | Physiology | -- |
| fn | his_bundle | his_bundle() | cardiac_electrophysiology | Physiology | -- |
| fn | left_bundle | left_bundle() | cardiac_electrophysiology | Physiology | -- |
| fn | right_bundle | right_bundle() | cardiac_electrophysiology | Physiology | -- |
| fn | purkinje_fibers | purkinje_fibers() | cardiac_electrophysiology | Physiology | -- |
| fn | lookup_conduction_node | lookup_conduction_node(name: String) | cardiac_electrophysiology | Physiology | -- |
| fn | total_activation_time_ms | total_activation_time_ms() | cardiac_electrophysiology | Physiology | -- |
| struct | ECGInterval | struct ECGInterval | cardiac_electrophysiology | Physiology | -- |
| fn | ecg_int | ecg_int(nm: String, nr: String, eb: String, pc: String, sc: String, cs: String, ci: String) | cardiac_electrophysiology | Physiology | -- |
| fn | p_wave | p_wave() | cardiac_electrophysiology | Physiology | -- |
| fn | pr_interval | pr_interval() | cardiac_electrophysiology | Physiology | -- |
| fn | qrs_complex | qrs_complex() | cardiac_electrophysiology | Physiology | -- |
| fn | qt_interval | qt_interval() | cardiac_electrophysiology | Physiology | -- |
| fn | qtc_bazett | qtc_bazett(qt_ms: Float, rr_ms: Float) | cardiac_electrophysiology | Physiology | -- |
| fn | qtc_fridericia | qtc_fridericia(qt_ms: Float, rr_ms: Float) | cardiac_electrophysiology | Physiology | -- |
| fn | qtc_framingham | qtc_framingham(qt_ms: Float, rr_ms: Float) | cardiac_electrophysiology | Physiology | -- |
| fn | t_wave | t_wave() | cardiac_electrophysiology | Physiology | -- |
| fn | u_wave | u_wave() | cardiac_electrophysiology | Physiology | -- |
| fn | lookup_ecg_interval | lookup_ecg_interval(name: String) | cardiac_electrophysiology | Physiology | -- |
| struct | ArrhythmiaMechanism | struct ArrhythmiaMechanism | cardiac_electrophysiology | Physiology | -- |
| fn | arrhythmia | arrhythmia(nm: String, mc: String, icb: String, ecg: String, tr: String, tx: String, ce: String, ci: String) | cardiac_electrophysiology | Physiology | -- |
| fn | reentry_mechanism | reentry_mechanism() | cardiac_electrophysiology | Physiology | -- |
| fn | wavelength_model | wavelength_model(cv_ms: Float, erp_ms: Float) | cardiac_electrophysiology | Physiology | -- |
| fn | ead_mechanism | ead_mechanism() | cardiac_electrophysiology | Physiology | -- |
| fn | dad_mechanism | dad_mechanism() | cardiac_electrophysiology | Physiology | -- |
| fn | af_mechanism | af_mechanism() | cardiac_electrophysiology | Physiology | -- |
| fn | vt_mechanism | vt_mechanism() | cardiac_electrophysiology | Physiology | -- |
| fn | vf_mechanism | vf_mechanism() | cardiac_electrophysiology | Physiology | -- |
| fn | lookup_arrhythmia | lookup_arrhythmia(name: String) | cardiac_electrophysiology | Physiology | -- |
| struct | AntiarrhythmicDrug | struct AntiarrhythmicDrug | cardiac_electrophysiology | Physiology | -- |
| fn | aad | aad(nm: String, vc: String, sc: String, pt: String, cg: String, mech: String, eap: String, cu: String, ae: String, kin: String, ci: String) | cardiac_electrophysiology | Physiology | -- |
| fn | procainamide | procainamide() | cardiac_electrophysiology | Physiology | -- |
| fn | quinidine | quinidine() | cardiac_electrophysiology | Physiology | -- |
| fn | lidocaine | lidocaine() | cardiac_electrophysiology | Physiology | -- |
| fn | mexiletine | mexiletine() | cardiac_electrophysiology | Physiology | -- |
| fn | flecainide | flecainide() | cardiac_electrophysiology | Physiology | -- |
| fn | propafenone | propafenone() | cardiac_electrophysiology | Physiology | -- |
| fn | metoprolol_antiarrhythmic | metoprolol_antiarrhythmic() | cardiac_electrophysiology | Physiology | -- |
| fn | amiodarone | amiodarone() | cardiac_electrophysiology | Physiology | -- |
| fn | sotalol | sotalol() | cardiac_electrophysiology | Physiology | -- |
| fn | dofetilide | dofetilide() | cardiac_electrophysiology | Physiology | -- |
| fn | verapamil_antiarrhythmic | verapamil_antiarrhythmic() | cardiac_electrophysiology | Physiology | -- |
| fn | diltiazem_antiarrhythmic | diltiazem_antiarrhythmic() | cardiac_electrophysiology | Physiology | -- |
| fn | lookup_antiarrhythmic | lookup_antiarrhythmic(name: String) | cardiac_electrophysiology | Physiology | -- |
| fn | vw_class_summary | vw_class_summary(class: String) | cardiac_electrophysiology | Physiology | -- |
| struct | NCACardiacMapping | struct NCACardiacMapping | cardiac_electrophysiology | Physiology | -- |
| fn | nca_cardiac_map | nca_cardiac_map(nc: String, ca: String, sm: String, ns: String, cs: String, eq: String, cl: String) | cardiac_electrophysiology | Physiology | -- |
| fn | bridge_gate_dynamics | bridge_gate_dynamics() | cardiac_electrophysiology | Physiology | -- |
| fn | bridge_alpha_beta_rates | bridge_alpha_beta_rates() | cardiac_electrophysiology | Physiology | -- |
| fn | bridge_conductance_to_current | bridge_conductance_to_current() | cardiac_electrophysiology | Physiology | -- |
| fn | bridge_cascade_to_ap | bridge_cascade_to_ap() | cardiac_electrophysiology | Physiology | -- |
| fn | bridge_half_life_decay | bridge_half_life_decay() | cardiac_electrophysiology | Physiology | -- |
| fn | bridge_antagonistic_pairs | bridge_antagonistic_pairs() | cardiac_electrophysiology | Physiology | -- |
| fn | bridge_scar_to_remodeling | bridge_scar_to_remodeling() | cardiac_electrophysiology | Physiology | -- |
| fn | bridge_summary | bridge_summary() | cardiac_electrophysiology | Physiology | -- |
| fn | evolve | evolve(&mut self, dt: Duration) | cardiac_electrophysiology | Physiology | -- |
| fn | stimulate | stimulate(&mut self, current: Float) | cardiac_electrophysiology | Physiology | -- |
| fn | apd90 | apd90(&self) | cardiac_electrophysiology | Physiology | -- |
| fn | resting | resting(&self) | cardiac_electrophysiology | Physiology | -- |
| fn | depolarized | depolarized(&self) | cardiac_electrophysiology | Physiology | -- |
| fn | refractory | refractory(&self) | cardiac_electrophysiology | Physiology | -- |
| fn | diagnose | diagnose(&self) | cardiac_electrophysiology | Physiology | -- |
| fn | evolve | evolve(&mut self, dt: Duration) | cardiac_electrophysiology | Physiology | -- |
| fn | heart_rate_bpm | heart_rate_bpm(&self) | cardiac_electrophysiology | Physiology | -- |
| fn | autonomic_modulation | autonomic_modulation(&mut self, sympathetic: Float, parasympathetic: Float) | cardiac_electrophysiology | Physiology | -- |
| fn | diagnose | diagnose(&self) | cardiac_electrophysiology | Physiology | -- |
| fn | cardiac_ion_count | cardiac_ion_count() | cardiac_electrophysiology | Physiology | -- |
| fn | cardiac_phase_count | cardiac_phase_count() | cardiac_electrophysiology | Physiology | -- |
| fn | cardiac_gate_model_count | cardiac_gate_model_count() | cardiac_electrophysiology | Physiology | -- |
| fn | conduction_node_count | conduction_node_count() | cardiac_electrophysiology | Physiology | -- |
| fn | ecg_interval_count | ecg_interval_count() | cardiac_electrophysiology | Physiology | -- |
| fn | arrhythmia_mechanism_count | arrhythmia_mechanism_count() | cardiac_electrophysiology | Physiology | -- |
| fn | antiarrhythmic_drug_count | antiarrhythmic_drug_count() | cardiac_electrophysiology | Physiology | -- |
| fn | nca_cardiac_mapping_count | nca_cardiac_mapping_count() | cardiac_electrophysiology | Physiology | -- |
| fn | cardiac_electrophysiology_summary | cardiac_electrophysiology_summary() | cardiac_electrophysiology | Physiology | -- |
| struct | HemorrhageDevice | struct HemorrhageDevice | cv_interventions | Pharmacology | -- |
| struct | TourniquetModel | struct TourniquetModel | cv_interventions | Pharmacology | -- |
| struct | FluidProduct | struct FluidProduct | cv_interventions | Pharmacology | -- |
| struct | VolumeKineticsModel | struct VolumeKineticsModel | cv_interventions | Pharmacology | -- |
| struct | BloodProduct | struct BloodProduct | cv_interventions | Pharmacology | -- |
| struct | MassiveTransfusionProtocol | struct MassiveTransfusionProtocol | cv_interventions | Pharmacology | -- |
| struct | VasoactiveDrug | struct VasoactiveDrug | cv_interventions | Pharmacology | -- |
| struct | InotropeDrug | struct InotropeDrug | cv_interventions | Pharmacology | -- |
| struct | AntifibrinolyticDrug | struct AntifibrinolyticDrug | cv_interventions | Pharmacology | -- |
| struct | MechanicalSupport | struct MechanicalSupport | cv_interventions | Pharmacology | -- |
| struct | CPRParameters | struct CPRParameters | cv_interventions | Pharmacology | -- |
| struct | DrugPK | struct DrugPK | cv_interventions | Pharmacology | -- |
| struct | DamageControlResuscitation | struct DamageControlResuscitation | cv_interventions | Pharmacology | -- |
| struct | WoundPackingTechnique | struct WoundPackingTechnique | cv_interventions | Pharmacology | -- |
| struct | DirectPressure | struct DirectPressure | cv_interventions | Pharmacology | -- |
| fn | tourniquet_cat | tourniquet_cat() | cv_interventions | Pharmacology | -- |
| fn | tourniquet_softtw | tourniquet_softtw() | cv_interventions | Pharmacology | -- |
| fn | tourniquet_rmt | tourniquet_rmt() | cv_interventions | Pharmacology | -- |
| fn | tourniquet_jett | tourniquet_jett() | cv_interventions | Pharmacology | -- |
| fn | compartment_syndrome_risk | compartment_syndrome_risk(time_hr: Float) | cv_interventions | Pharmacology | -- |
| fn | limb_salvage_rate | limb_salvage_rate(time_hr: Float) | cv_interventions | Pharmacology | -- |
| fn | tourniquet_release_potassium_spike | tourniquet_release_potassium_spike(time_hr: Float) | cv_interventions | Pharmacology | -- |
| fn | tourniquet_release_lactate_spike | tourniquet_release_lactate_spike(time_hr: Float) | cv_interventions | Pharmacology | -- |
| fn | xstat_30 | xstat_30() | cv_interventions | Pharmacology | -- |
| fn | xstat_absorption_capacity_mL | xstat_absorption_capacity_mL() | cv_interventions | Pharmacology | -- |
| fn | xstat_sponge_diameter | xstat_sponge_diameter(time_sec: Float) | cv_interventions | Pharmacology | -- |
| fn | combat_gauze_quikclot | combat_gauze_quikclot() | cv_interventions | Pharmacology | -- |
| fn | celox_gauze | celox_gauze() | cv_interventions | Pharmacology | -- |
| fn | direct_pressure_efficacy | direct_pressure_efficacy(wound_type: String) | cv_interventions | Pharmacology | -- |
| fn | wound_packing | wound_packing(technique: String) | cv_interventions | Pharmacology | -- |
| fn | fluid_product | fluid_product(name: String) | cv_interventions | Pharmacology | -- |
| fn | volume_kinetics_ns | volume_kinetics_ns() | cv_interventions | Pharmacology | -- |
| fn | volume_kinetics_lr | volume_kinetics_lr() | cv_interventions | Pharmacology | -- |
| fn | volume_kinetics_albumin_5 | volume_kinetics_albumin_5() | cv_interventions | Pharmacology | -- |
| fn | volume_expansion_central | volume_expansion_central(infusion_rate_mL_min: Float, cl_mL_min: Float, vc_mL: Float, time_min: Float) | cv_interventions | Pharmacology | -- |
| fn | plasma_dilution | plasma_dilution(vc_expansion_mL: Float, vc_mL: Float) | cv_interventions | Pharmacology | -- |
| fn | damage_control_resuscitation | damage_control_resuscitation() | cv_interventions | Pharmacology | -- |
| fn | lethal_triad_score | lethal_triad_score(temp_C: Float, pH: Float, inr: Float) | cv_interventions | Pharmacology | -- |
| fn | blood_product | blood_product(name: String) | cv_interventions | Pharmacology | -- |
| fn | massive_transfusion_protocol | massive_transfusion_protocol() | cv_interventions | Pharmacology | -- |
| fn | abc_score | abc_score(penetrating: Int, sbp_lte_90: Int, hr_gte_120: Int, fast_positive: Int) | cv_interventions | Pharmacology | -- |
| fn | shock_index | shock_index(heart_rate: Float, systolic_bp: Float) | cv_interventions | Pharmacology | -- |
| fn | modified_shock_index | modified_shock_index(heart_rate: Float, mean_arterial_pressure: Float) | cv_interventions | Pharmacology | -- |
| fn | expected_hgb_increment | expected_hgb_increment(units_transfused: Float, patient_weight_kg: Float) | cv_interventions | Pharmacology | -- |
| fn | expected_platelet_increment | expected_platelet_increment(units_apheresis: Float, patient_bsa_m2: Float) | cv_interventions | Pharmacology | -- |
| fn | expected_fibrinogen_increment | expected_fibrinogen_increment(cryo_units: Float, patient_weight_kg: Float) | cv_interventions | Pharmacology | -- |
| fn | citrate_toxicity_risk | citrate_toxicity_risk(units_per_hour: Float, hepatic_function_fraction: Float) | cv_interventions | Pharmacology | -- |
| fn | vasoactive_drug | vasoactive_drug(name: String) | cv_interventions | Pharmacology | -- |
| fn | vasoactive_effect_conductance | vasoactive_effect_conductance(emax: Float, concentration: Float, ec50: Float) | cv_interventions | Pharmacology | -- |
| fn | ne_map_response | ne_map_response(dose_mcg_kg_min: Float) | cv_interventions | Pharmacology | -- |
| fn | ne_svr_response | ne_svr_response(dose_mcg_kg_min: Float) | cv_interventions | Pharmacology | -- |
| fn | ne_hr_response | ne_hr_response(dose_mcg_kg_min: Float) | cv_interventions | Pharmacology | -- |
| fn | dopamine_d1_fraction | dopamine_d1_fraction(dose_mcg_kg_min: Float) | cv_interventions | Pharmacology | -- |
| fn | dopamine_beta1_fraction | dopamine_beta1_fraction(dose_mcg_kg_min: Float) | cv_interventions | Pharmacology | -- |
| fn | dopamine_alpha1_fraction | dopamine_alpha1_fraction(dose_mcg_kg_min: Float) | cv_interventions | Pharmacology | -- |
| fn | inotrope_drug | inotrope_drug(name: String) | cv_interventions | Pharmacology | -- |
| fn | dobutamine_co_response | dobutamine_co_response(dose_mcg_kg_min: Float) | cv_interventions | Pharmacology | -- |
| fn | milrinone_co_response | milrinone_co_response(dose_mcg_kg_min: Float) | cv_interventions | Pharmacology | -- |
| fn | milrinone_svr_response | milrinone_svr_response(dose_mcg_kg_min: Float) | cv_interventions | Pharmacology | -- |
| fn | levosimendan_total_effect | levosimendan_total_effect(time_hr_after_infusion: Float) | cv_interventions | Pharmacology | -- |
| fn | tranexamic_acid | tranexamic_acid() | cv_interventions | Pharmacology | -- |
| fn | txa_plasma_concentration | txa_plasma_concentration(time_min: Float) | cv_interventions | Pharmacology | -- |
| fn | txa_above_therapeutic_threshold | txa_above_therapeutic_threshold(concentration_mcg_mL: Float) | cv_interventions | Pharmacology | -- |
| fn | txa_nnt_by_time | txa_nnt_by_time(time_to_treatment_hr: Float) | cv_interventions | Pharmacology | -- |
| fn | txa_woman_trial_rr | txa_woman_trial_rr() | cv_interventions | Pharmacology | -- |
| fn | mechanical_support | mechanical_support(name: String) | cv_interventions | Pharmacology | -- |
| fn | harlequin_detected | harlequin_detected(spo2_right_hand: Float, spo2_left_foot: Float) | cv_interventions | Pharmacology | -- |
| fn | ecmo_target_flow | ecmo_target_flow(weight_kg: Float, support_level: String) | cv_interventions | Pharmacology | -- |
| fn | cpr_parameters | cpr_parameters() | cv_interventions | Pharmacology | -- |
| fn | cpr_cardiac_output_fraction | cpr_cardiac_output_fraction(compression_depth_cm: Float, compression_rate: Float, chest_recoil_fraction: Float) | cv_interventions | Pharmacology | -- |
| fn | coronary_perfusion_pressure | coronary_perfusion_pressure(aortic_diastolic: Float, right_atrial_pressure: Float) | cv_interventions | Pharmacology | -- |
| fn | defib_success_probability | defib_success_probability(time_from_arrest_min: Float) | cv_interventions | Pharmacology | -- |
| fn | epinephrine_rosc_probability | epinephrine_rosc_probability(time_to_first_epi_min: Float) | cv_interventions | Pharmacology | -- |
| fn | drug_pk | drug_pk(name: String) | cv_interventions | Pharmacology | -- |
| fn | iv_infusion_concentration | iv_infusion_concentration(infusion_rate_mg_min: Float, clearance_mL_min: Float, ke_per_min: Float, time_min: Float, infusion_duration_min: Float) | cv_interventions | Pharmacology | -- |
| fn | two_compartment_iv_bolus | two_compartment_iv_bolus(A: Float, alpha: Float, B: Float, beta: Float, time_min: Float) | cv_interventions | Pharmacology | -- |
| fn | effect_site_concentration | effect_site_concentration(dose_mg: Float, vd_L: Float, ke: Float, ke0: Float, time_min: Float) | cv_interventions | Pharmacology | -- |
| fn | time_to_peak_effect | time_to_peak_effect(ke: Float, ke0: Float) | cv_interventions | Pharmacology | -- |
| fn | context_sensitive_half_time_1comp | context_sensitive_half_time_1comp(half_life_min: Float) | cv_interventions | Pharmacology | -- |
| fn | accumulation_factor | accumulation_factor(ke_per_min: Float, dosing_interval_min: Float) | cv_interventions | Pharmacology | -- |
| fn | time_to_steady_state_fraction | time_to_steady_state_fraction(ke_per_min: Float, fraction: Float) | cv_interventions | Pharmacology | -- |
| fn | half_lives_to_fraction | half_lives_to_fraction(fraction: Float) | cv_interventions | Pharmacology | -- |
| fn | hemodynamic_response_hh | hemodynamic_response_hh(emax: Float, concentration: Float, ec50: Float) | cv_interventions | Pharmacology | -- |
| fn | combined_vasopressor_map | combined_vasopressor_map(map_baseline: Float, ne_effect: Float, vaso_effect: Float, epi_effect: Float, angii_effect: Float) | cv_interventions | Pharmacology | -- |
| fn | map_from_co_svr | map_from_co_svr(cardiac_output_L_min: Float, svr_dynes_sec_cm5: Float) | cv_interventions | Pharmacology | -- |
| fn | cardiac_output_model | cardiac_output_model(sv_base_mL: Float, heart_rate: Float, inotrope_effect_pct: Float, afterload_factor: Float) | cv_interventions | Pharmacology | -- |
| struct | HemorrhageClass | struct HemorrhageClass | cv_interventions | Pharmacology | -- |
| fn | hemorrhage_class | hemorrhage_class(class_num: Int) | cv_interventions | Pharmacology | -- |
| fn | estimate_hemorrhage_class | estimate_hemorrhage_class(heart_rate: Float, systolic_bp: Float, gcs: Float, urine_mL_hr: Float) | cv_interventions | Pharmacology | -- |
| fn | estimated_blood_volume_male | estimated_blood_volume_male(height_cm: Float, weight_kg: Float) | cv_interventions | Pharmacology | -- |
| fn | estimated_blood_volume_female | estimated_blood_volume_female(height_cm: Float, weight_kg: Float) | cv_interventions | Pharmacology | -- |
| fn | allowable_blood_loss | allowable_blood_loss(ebv_L: Float, hgb_current: Float, hgb_trigger: Float) | cv_interventions | Pharmacology | -- |
| fn | o2_delivery | o2_delivery(cardiac_output_L_min: Float, hgb_g_dL: Float, sao2_pct: Float, pao2_mmHg: Float) | cv_interventions | Pharmacology | -- |
| fn | o2_consumption | o2_consumption(cardiac_output_L_min: Float, cao2: Float, cvo2: Float) | cv_interventions | Pharmacology | -- |
| fn | o2_extraction_ratio | o2_extraction_ratio(vo2: Float, do2: Float) | cv_interventions | Pharmacology | -- |
| fn | recommend_vasopressor | recommend_vasopressor(map_mmHg: Float, heart_rate: Float, cardiac_output_L_min: Float, svr: Float, shock_type: String) | cv_interventions | Pharmacology | -- |
| fn | fluid_or_blood | fluid_or_blood(hgb_g_dL: Float, hemorrhage_class: Int, estimated_blood_loss_pct: Float) | cv_interventions | Pharmacology | -- |
| fn | transfusion_trigger | transfusion_trigger(hgb_g_dL: Float, has_acs: Int, is_symptomatic: Int) | cv_interventions | Pharmacology | -- |
| fn | inr_from_pt | inr_from_pt(patient_pt_sec: Float, mean_normal_pt_sec: Float, isi: Float) | cv_interventions | Pharmacology | -- |
| fn | fibrinogen_after_cryo | fibrinogen_after_cryo(baseline_mg_dL: Float, cryo_units: Float, patient_weight_kg: Float) | cv_interventions | Pharmacology | -- |
| fn | teg_interpretation | teg_interpretation(r_time_min: Float, k_time_min: Float, ma_mm: Float, ly30_pct: Float) | cv_interventions | Pharmacology | -- |
| fn | base_deficit_to_hemorrhage | base_deficit_to_hemorrhage(base_deficit: Float) | cv_interventions | Pharmacology | -- |
| fn | lactate_clearance | lactate_clearance(initial_mmol_L: Float, current_mmol_L: Float) | cv_interventions | Pharmacology | -- |
| fn | lactate_clearance_adequate | lactate_clearance_adequate(clearance_pct: Float) | cv_interventions | Pharmacology | -- |
| fn | golden_hour_survival | golden_hour_survival(time_hr: Float, iss: Float) | cv_interventions | Pharmacology | -- |
| fn | limb_outcome | limb_outcome(tourniquet_time_hr: Float, or_time_hr: Float) | cv_interventions | Pharmacology | -- |
| fn | arrest_survival_by_defib_time | arrest_survival_by_defib_time(time_to_defib_min: Float, bystander_cpr: Int) | cv_interventions | Pharmacology | -- |
| fn | txa_mortality_model | txa_mortality_model(time_to_treatment_hr: Float, baseline_mortality_pct: Float) | cv_interventions | Pharmacology | -- |
| fn | hypothermia_from_cold_blood | hypothermia_from_cold_blood(units_unwarmed: Float, baseline_temp_C: Float) | cv_interventions | Pharmacology | -- |
| fn | time_to_warm_ffp_min | time_to_warm_ffp_min(method: String) | cv_interventions | Pharmacology | -- |
| fn | norepinephrine_equivalent_dose | norepinephrine_equivalent_dose(ne_dose: Float, vaso_dose_units_min: Float, epi_dose: Float, dopa_dose: Float, phenyl_dose_mcg_min: Float, angii_dose_ng_kg_min: Float) | cv_interventions | Pharmacology | -- |
| fn | vasopressor_dependency_index | vasopressor_dependency_index(ned: Float, map_mmHg: Float) | cv_interventions | Pharmacology | -- |
| fn | vasopressor_wean_step | vasopressor_wean_step(current_dose: Float, wean_fraction: Float) | cv_interventions | Pharmacology | -- |
| fn | target_map | target_map(shock_type: String) | cv_interventions | Pharmacology | -- |
| struct | MembraneComponent | struct MembraneComponent | vesicle | Cell Biology | -- |
| fn | memcomp | memcomp(nm: String, cat: String, pct: Float, form: String, mw: Float, chg: String, leaf: String, role: String, cite: String) | vesicle | Cell Biology | -- |
| fn | phosphatidylcholine | phosphatidylcholine() | vesicle | Cell Biology | -- |
| fn | phosphatidylethanolamine | phosphatidylethanolamine() | vesicle | Cell Biology | -- |
| fn | phosphatidylserine | phosphatidylserine() | vesicle | Cell Biology | -- |
| fn | phosphatidylinositol | phosphatidylinositol() | vesicle | Cell Biology | -- |
| fn | sphingomyelin | sphingomyelin() | vesicle | Cell Biology | -- |
| fn | cholesterol_membrane | cholesterol_membrane() | vesicle | Cell Biology | -- |
| fn | bilayer_thickness_nm | bilayer_thickness_nm() | vesicle | Cell Biology | -- |
| fn | membrane_fluidity_diffusion_um2_per_s | membrane_fluidity_diffusion_um2_per_s() | vesicle | Cell Biology | -- |
| fn | flip_flop_half_life_hours | flip_flop_half_life_hours() | vesicle | Cell Biology | -- |
| fn | membrane_permeability | membrane_permeability(molecule: String) | vesicle | Cell Biology | -- |
| struct | SNAREProtein | struct SNAREProtein | vesicle | Cell Biology | -- |
| fn | snare | snare(nm: String, gn: String, up: String, st: String, loc: String, ht: String, fd: String, dl: String, ci: String) | vesicle | Cell Biology | -- |
| fn | vamp2 | vamp2() | vesicle | Cell Biology | -- |
| fn | syntaxin1 | syntaxin1() | vesicle | Cell Biology | -- |
| fn | snap25 | snap25() | vesicle | Cell Biology | -- |
| fn | snare_complex_energy | snare_complex_energy() | vesicle | Cell Biology | -- |
| struct | VesicleStep | struct VesicleStep | vesicle | Cell Biology | -- |
| fn | vstep | vstep(sn: Int, nm: String, kp: String, mech: String, energy: String, time: String, ci: String) | vesicle | Cell Biology | -- |
| fn | vesicle_formation | vesicle_formation() | vesicle | Cell Biology | -- |
| fn | vesicle_loading | vesicle_loading() | vesicle | Cell Biology | -- |
| fn | vesicle_transport | vesicle_transport() | vesicle | Cell Biology | -- |
| fn | vesicle_tethering | vesicle_tethering() | vesicle | Cell Biology | -- |
| fn | vesicle_docking | vesicle_docking() | vesicle | Cell Biology | -- |
| fn | vesicle_priming | vesicle_priming() | vesicle | Cell Biology | -- |
| fn | vesicle_fusion | vesicle_fusion() | vesicle | Cell Biology | -- |
| fn | vesicle_step_count | vesicle_step_count() | vesicle | Cell Biology | -- |
| struct | VesicleType | struct VesicleType | vesicle | Cell Biology | -- |
| fn | vtype | vtype(nm: String, coat: String, orig: String, dest: String, cargo: String, ex: String, ci: String) | vesicle | Cell Biology | -- |
| fn | clathrin_vesicle | clathrin_vesicle() | vesicle | Cell Biology | -- |
| fn | copi_vesicle | copi_vesicle() | vesicle | Cell Biology | -- |
| fn | copii_vesicle | copii_vesicle() | vesicle | Cell Biology | -- |
| fn | synaptic_vesicle | synaptic_vesicle() | vesicle | Cell Biology | -- |
| fn | secretory_granule | secretory_granule() | vesicle | Cell Biology | -- |
| fn | insulin_granule | insulin_granule() | vesicle | Cell Biology | -- |
| fn | fusion_hemifusion_stalk | fusion_hemifusion_stalk() | vesicle | Cell Biology | -- |
| fn | fusion_pore_formation | fusion_pore_formation() | vesicle | Cell Biology | -- |
| fn | fusion_pore_expansion | fusion_pore_expansion() | vesicle | Cell Biology | -- |
| fn | kiss_and_run | kiss_and_run() | vesicle | Cell Biology | -- |
| struct | IonicRequirement | struct IonicRequirement | vesicle | Cell Biology | -- |
| fn | ionreq | ionreq(ion: String, conc: String, role: String, src: String, ci: String) | vesicle | Cell Biology | -- |
| fn | calcium_fusion | calcium_fusion() | vesicle | Cell Biology | -- |
| fn | proton_acidification | proton_acidification() | vesicle | Cell Biology | -- |
| fn | chloride_vesicle | chloride_vesicle() | vesicle | Cell Biology | -- |
| fn | zinc_insulin | zinc_insulin() | vesicle | Cell Biology | -- |
| fn | atp_vesicle | atp_vesicle() | vesicle | Cell Biology | -- |
| fn | atp_per_vesicle_cycle | atp_per_vesicle_cycle() | vesicle | Cell Biology | -- |
| fn | synaptic_vesicle_diameter_nm | synaptic_vesicle_diameter_nm() | vesicle | Cell Biology | -- |
| fn | insulin_granule_diameter_nm | insulin_granule_diameter_nm() | vesicle | Cell Biology | -- |
| fn | clathrin_vesicle_diameter_nm | clathrin_vesicle_diameter_nm() | vesicle | Cell Biology | -- |
| fn | copii_vesicle_diameter_nm | copii_vesicle_diameter_nm() | vesicle | Cell Biology | -- |
| fn | synaptic_vesicle_protein_count | synaptic_vesicle_protein_count() | vesicle | Cell Biology | -- |
| fn | synaptic_vesicle_lipid_count | synaptic_vesicle_lipid_count() | vesicle | Cell Biology | -- |
| fn | insulin_granules_per_beta_cell | insulin_granules_per_beta_cell() | vesicle | Cell Biology | -- |
| fn | readily_releasable_pool | readily_releasable_pool() | vesicle | Cell Biology | -- |
| fn | neurotransmitter_per_vesicle | neurotransmitter_per_vesicle(nt: String) | vesicle | Cell Biology | -- |
| struct | VesicleDisease | struct VesicleDisease | vesicle | Cell Biology | -- |
| fn | vdisease | vdisease(nm: String, gn: String, prot: String, step: String, mech: String, clin: String, ci: String) | vesicle | Cell Biology | -- |
| fn | botulism | botulism() | vesicle | Cell Biology | -- |
| fn | tetanus | tetanus() | vesicle | Cell Biology | -- |
| fn | type2_diabetes_vesicle | type2_diabetes_vesicle() | vesicle | Cell Biology | -- |
| fn | chediak_higashi | chediak_higashi() | vesicle | Cell Biology | -- |
| fn | vesicle_disease_count | vesicle_disease_count() | vesicle | Cell Biology | -- |
| struct | CellBase | struct CellBase | cell | Cell Biology | -- |
| fn | cell_base | cell_base(ct: String, nm: String, nuc: Bool, wall: Bool, mito: Bool, chloro: Bool, er: Bool, golgi: Bool, lyso: Bool, perox: Bool, cyto: Bool, dia: Float, ci: String) | cell | Cell Biology | -- |
| fn | eukaryote | eukaryote(name: String, diameter: Float) | cell | Cell Biology | -- |
| fn | prokaryote | prokaryote(name: String, diameter: Float) | cell | Cell Biology | -- |
| fn | plant_cell | plant_cell(name: String, diameter: Float) | cell | Cell Biology | -- |
| fn | hepatocyte | hepatocyte() | cell | Cell Biology | -- |
| fn | neuron | neuron() | cell | Cell Biology | -- |
| fn | cardiomyocyte | cardiomyocyte() | cell | Cell Biology | -- |
| fn | beta_cell | beta_cell() | cell | Cell Biology | -- |
| fn | erythrocyte | erythrocyte() | cell | Cell Biology | -- |
| fn | neutrophil | neutrophil() | cell | Cell Biology | -- |
| fn | macrophage | macrophage() | cell | Cell Biology | -- |
| fn | t_cell | t_cell() | cell | Cell Biology | -- |
| fn | adipocyte | adipocyte() | cell | Cell Biology | -- |
| fn | osteoblast | osteoblast() | cell | Cell Biology | -- |
| fn | skeletal_muscle | skeletal_muscle() | cell | Cell Biology | -- |
| fn | enterocyte | enterocyte() | cell | Cell Biology | -- |
| fn | podocyte | podocyte() | cell | Cell Biology | -- |
| fn | e_coli | e_coli() | cell | Cell Biology | -- |
| fn | s_aureus | s_aureus() | cell | Cell Biology | -- |
| fn | m_tuberculosis | m_tuberculosis() | cell | Cell Biology | -- |
| fn | mesophyll | mesophyll() | cell | Cell Biology | -- |
| fn | guard_cell | guard_cell() | cell | Cell Biology | -- |
| fn | root_hair | root_hair() | cell | Cell Biology | -- |
| fn | organelle_manifest | organelle_manifest(cell: CellBase) | cell | Cell Biology | -- |
| fn | cell_operations | cell_operations(cell: CellBase) | cell | Cell Biology | -- |
| fn | cells_in_human_body | cells_in_human_body() | cell | Cell Biology | -- |
| fn | bacteria_in_human_body | bacteria_in_human_body() | cell | Cell Biology | -- |
| fn | cell_size_range | cell_size_range() | cell | Cell Biology | -- |
| fn | mitochondria_per_cell | mitochondria_per_cell(cell_type: String) | cell | Cell Biology | -- |
| struct | MembraneDomain | struct MembraneDomain | cell_membrane | Cell Biology | -- |
| fn | mdomain | mdomain(nm: String, lip: String, prot: String, role: String, sz: String, lt: String, ci: String) | cell_membrane | Cell Biology | -- |
| fn | lipid_raft | lipid_raft() | cell_membrane | Cell Biology | -- |
| fn | caveolae | caveolae() | cell_membrane | Cell Biology | -- |
| fn | clathrin_pit | clathrin_pit() | cell_membrane | Cell Biology | -- |
| fn | active_zone | active_zone() | cell_membrane | Cell Biology | -- |
| fn | immunological_synapse | immunological_synapse() | cell_membrane | Cell Biology | -- |
| struct | DockingSite | struct DockingSite | cell_membrane | Cell Biology | -- |
| fn | dsite | dsite(nm: String, ms: String, vs: String, ca: String, fm: String, cargo: String, reg: String, ci: String) | cell_membrane | Cell Biology | -- |
| fn | exocytosis_site | exocytosis_site() | cell_membrane | Cell Biology | -- |
| fn | constitutive_secretion_site | constitutive_secretion_site() | cell_membrane | Cell Biology | -- |
| fn | endocytic_site | endocytic_site() | cell_membrane | Cell Biology | -- |
| fn | dock_vesicle | dock_vesicle(vesicle_type: String, site_type: String) | cell_membrane | Cell Biology | -- |
| fn | vesicle_budding_from_membrane | vesicle_budding_from_membrane() | cell_membrane | Cell Biology | -- |
| fn | vesicle_fusion_with_membrane | vesicle_fusion_with_membrane() | cell_membrane | Cell Biology | -- |
| struct | MembraneTransporter | struct MembraneTransporter | cell_membrane | Cell Biology | -- |
| fn | mtrans | mtrans(nm: String, gn: String, up: String, tt: String, sub: String, dir: String, en: String, tis: String, drug: String, ci: String) | cell_membrane | Cell Biology | -- |
| fn | na_k_atpase | na_k_atpase() | cell_membrane | Cell Biology | -- |
| fn | glut4 | glut4() | cell_membrane | Cell Biology | -- |
| fn | glut1 | glut1() | cell_membrane | Cell Biology | -- |
| fn | cftr | cftr() | cell_membrane | Cell Biology | -- |
| fn | aquaporin1 | aquaporin1() | cell_membrane | Cell Biology | -- |
| fn | voltage_gated_na | voltage_gated_na() | cell_membrane | Cell Biology | -- |
| struct | SurfaceMarker | struct SurfaceMarker | cell_membrane | Cell Biology | -- |
| fn | smarker | smarker(nm: String, gn: String, mt: String, role: String, clin: String, ci: String) | cell_membrane | Cell Biology | -- |
| fn | mhc_class_i | mhc_class_i() | cell_membrane | Cell Biology | -- |
| fn | mhc_class_ii | mhc_class_ii() | cell_membrane | Cell Biology | -- |
| fn | abo_antigen | abo_antigen() | cell_membrane | Cell Biology | -- |
| fn | membrane_capabilities | membrane_capabilities() | cell_membrane | Cell Biology | -- |
| fn | membrane_composition_eukaryote | membrane_composition_eukaryote() | cell_membrane | Cell Biology | -- |
| fn | membrane_composition_prokaryote | membrane_composition_prokaryote() | cell_membrane | Cell Biology | -- |
| fn | membrane_composition_plant | membrane_composition_plant() | cell_membrane | Cell Biology | -- |
| fn | eukaryote_genome_size_bp | eukaryote_genome_size_bp() | cell_eukaryote | Cell Biology | -- |
| fn | eukaryote_gene_count | eukaryote_gene_count() | cell_eukaryote | Cell Biology | -- |
| fn | eukaryote_chromosome_count | eukaryote_chromosome_count() | cell_eukaryote | Cell Biology | -- |
| fn | nuclear_pore_count | nuclear_pore_count() | cell_eukaryote | Cell Biology | -- |
| fn | ribosome_count_cytoplasmic | ribosome_count_cytoplasmic() | cell_eukaryote | Cell Biology | -- |
| fn | proteasome_count | proteasome_count() | cell_eukaryote | Cell Biology | -- |
| fn | eukaryote_defining_features | eukaryote_defining_features() | cell_eukaryote | Cell Biology | -- |
| fn | prokaryote_genome_size_bp | prokaryote_genome_size_bp(species: String) | cell_prokaryote | Cell Biology | -- |
| fn | prokaryote_gene_count | prokaryote_gene_count() | cell_prokaryote | Cell Biology | -- |
| fn | prokaryote_generation_time_min | prokaryote_generation_time_min() | cell_prokaryote | Cell Biology | -- |
| fn | prokaryote_defining_features | prokaryote_defining_features() | cell_prokaryote | Cell Biology | -- |
| fn | plant_defining_features | plant_defining_features() | cell_plant | Cell Biology | -- |
| fn | cell_wall_composition | cell_wall_composition() | cell_plant | Cell Biology | -- |
| fn | vacuole_functions | vacuole_functions() | cell_plant | Cell Biology | -- |
| fn | epithelial_defining_features | epithelial_defining_features() | cell_epithelial | Cell Biology | -- |
| fn | muscle_defining_features | muscle_defining_features() | cell_muscle | Cell Biology | -- |
| fn | neural_defining_features | neural_defining_features() | cell_neural | Cell Biology | -- |
| fn | immune_defining_features | immune_defining_features() | cell_immune | Cell Biology | -- |
| fn | endocrine_defining_features | endocrine_defining_features() | cell_endocrine | Cell Biology | -- |
| fn | connective_defining_features | connective_defining_features() | cell_connective | Cell Biology | -- |
| struct | PatientTwin | struct PatientTwin | ghostpharma_engine | Pharmacology | -- |
| struct | PKResult | struct PKResult | ghostpharma_engine | Pharmacology | -- |
| struct | InteractionResult | struct InteractionResult | ghostpharma_engine | Pharmacology | -- |
| struct | RedFlag | struct RedFlag | ghostpharma_engine | Pharmacology | -- |
| struct | DrugEntry | struct DrugEntry | ghostpharma_engine | Pharmacology | -- |
| struct | CYP450Profile | struct CYP450Profile | ghostpharma_engine | Pharmacology | -- |
| fn | compute_bsa | compute_bsa(height_cm: Float, weight_kg: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | compute_ibw | compute_ibw(height_cm: Float, sex: String) | ghostpharma_engine | Pharmacology | -- |
| fn | compute_abw | compute_abw(ibw: Float, total_bw: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | compute_map | compute_map(systolic: Float, diastolic: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | compute_shock_index | compute_shock_index(heart_rate: Float, systolic_bp: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | compute_anion_gap | compute_anion_gap(sodium: Float, chloride: Float, co2: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | compute_corrected_anion_gap | compute_corrected_anion_gap(ag: Float, albumin: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | compute_gfr_ckd_epi | compute_gfr_ckd_epi(age: Float, serum_cr: Float, sex: String) | ghostpharma_engine | Pharmacology | -- |
| fn | compute_crcl_cockcroft_gault | compute_crcl_cockcroft_gault(age: Float, weight_kg: Float, serum_cr: Float, sex: String) | ghostpharma_engine | Pharmacology | -- |
| fn | compute_derived | compute_derived(twin: PatientTwin) | ghostpharma_engine | Pharmacology | -- |
| fn | classify_renal | classify_renal(twin: PatientTwin) | ghostpharma_engine | Pharmacology | -- |
| fn | classify_hepatic | classify_hepatic(twin: PatientTwin) | ghostpharma_engine | Pharmacology | -- |
| fn | classify_cardiac | classify_cardiac(twin: PatientTwin) | ghostpharma_engine | Pharmacology | -- |
| fn | flag_critical_values | flag_critical_values(twin: PatientTwin) | ghostpharma_engine | Pharmacology | -- |
| fn | pk_ke | pk_ke(half_life_hr: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | pk_iv_bolus | pk_iv_bolus(dose: Float, vd: Float, ke: Float, t: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | pk_iv_infusion | pk_iv_infusion(rate: Float, vd: Float, ke: Float, t: Float, t_inf: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | pk_oral | pk_oral(dose: Float, ka: Float, vd: Float, ke: Float, f: Float, t: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | pk_tmax | pk_tmax(ka: Float, ke: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | pk_cmax | pk_cmax(dose: Float, ka: Float, vd: Float, ke: Float, f: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | pk_auc | pk_auc(dose: Float, f: Float, clearance: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | pk_accumulation_factor | pk_accumulation_factor(ke: Float, tau: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | pk_multiple_dose | pk_multiple_dose(dose: Float, ka: Float, vd: Float, ke: Float, f: Float, tau: Float, n_doses: Int, t: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | pk_steady_state_avg | pk_steady_state_avg(dose: Float, f: Float, cl: Float, tau: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | pk_css_max | pk_css_max(dose: Float, f: Float, vd: Float, ke: Float, tau: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | pk_css_min | pk_css_min(dose: Float, f: Float, vd: Float, ke: Float, tau: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | pk_time_to_steady_state | pk_time_to_steady_state(half_life_hr: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | pk_loading_dose | pk_loading_dose(target_conc: Float, vd: Float, f: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | pk_maintenance_dose | pk_maintenance_dose(target_conc: Float, cl: Float, tau: Float, f: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | pk_two_compartment_iv | pk_two_compartment_iv(a_coeff: Float, alpha: Float, b_coeff: Float, beta: Float, t: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | pk_half_life | pk_half_life(vd: Float, cl: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | drug_db | drug_db(name: String) | ghostpharma_engine | Pharmacology | -- |
| fn | adjust_renal | adjust_renal(drug_name: String, gfr: Float, normal_dose: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | renal_adjustment_reason | renal_adjustment_reason(drug_name: String, gfr: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | adjust_hepatic | adjust_hepatic(drug_name: String, child_pugh_class: String, normal_dose: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | hepatic_adjustment_reason | hepatic_adjustment_reason(drug_name: String, child_pugh_class: String) | ghostpharma_engine | Pharmacology | -- |
| fn | adjust_clearance | adjust_clearance(drug: DrugEntry, twin: PatientTwin) | ghostpharma_engine | Pharmacology | -- |
| fn | adjust_vd | adjust_vd(drug: DrugEntry, twin: PatientTwin) | ghostpharma_engine | Pharmacology | -- |
| fn | adjust_half_life | adjust_half_life(vd: Float, cl: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | generate_time_points | generate_time_points() | ghostpharma_engine | Pharmacology | -- |
| fn | array_max | array_max(arr: Array) | ghostpharma_engine | Pharmacology | -- |
| fn | array_argmax | array_argmax(arr: Array) | ghostpharma_engine | Pharmacology | -- |
| fn | check_therapeutic_window | check_therapeutic_window(concentrations: Array, therapeutic_min: Float, therapeutic_max: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | determine_dose_adjustment | determine_dose_adjustment(drug: DrugEntry, gfr: Float, child_pugh_class: String) | ghostpharma_engine | Pharmacology | -- |
| fn | cyp_profile | cyp_profile(drug_name: String) | ghostpharma_engine | Pharmacology | -- |
| fn | cyp_overlap | cyp_overlap(cyp_a: String, cyp_b: String) | ghostpharma_engine | Pharmacology | -- |
| fn | interaction_severity | interaction_severity(mechanism: String, enzymes: String) | ghostpharma_engine | Pharmacology | -- |
| fn | check_pair_interaction | check_pair_interaction(drug1_name: String, drug2_name: String) | ghostpharma_engine | Pharmacology | -- |
| fn | check_known_interaction | check_known_interaction(drug1: String, drug2: String) | ghostpharma_engine | Pharmacology | -- |
| fn | check_interactions | check_interactions(drug_list: Array) | ghostpharma_engine | Pharmacology | -- |
| fn | qt_risk_score | qt_risk_score(drug_list: Array) | ghostpharma_engine | Pharmacology | -- |
| fn | bleeding_risk_drugs | bleeding_risk_drugs(drug_list: Array) | ghostpharma_engine | Pharmacology | -- |
| fn | serotonin_risk_drugs | serotonin_risk_drugs(drug_list: Array) | ghostpharma_engine | Pharmacology | -- |
| fn | hyperkalemia_risk | hyperkalemia_risk(twin: PatientTwin, drug_list: Array) | ghostpharma_engine | Pharmacology | -- |
| fn | nephrotoxic_drug_count | nephrotoxic_drug_count(drug_list: Array) | ghostpharma_engine | Pharmacology | -- |
| fn | hepatotoxic_drug_count | hepatotoxic_drug_count(drug_list: Array) | ghostpharma_engine | Pharmacology | -- |
| fn | hypoglycemia_risk | hypoglycemia_risk(twin: PatientTwin, drug_list: Array) | ghostpharma_engine | Pharmacology | -- |
| fn | check_red_flags | check_red_flags(twin: PatientTwin, drug_list: Array) | ghostpharma_engine | Pharmacology | -- |
| fn | generate_patient_summary | generate_patient_summary(twin: PatientTwin) | ghostpharma_engine | Pharmacology | -- |
| fn | generate_drug_report | generate_drug_report(result: PKResult) | ghostpharma_engine | Pharmacology | -- |
| fn | generate_interaction_report | generate_interaction_report(interactions: Array) | ghostpharma_engine | Pharmacology | -- |
| fn | generate_flag_report | generate_flag_report(flags: Array) | ghostpharma_engine | Pharmacology | -- |
| fn | generate_report | generate_report(twin: PatientTwin, drug_results: Array, interactions: Array, flags: Array) | ghostpharma_engine | Pharmacology | -- |
| fn | corrected_calcium | corrected_calcium(measured_ca: Float, albumin: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | corrected_phenytoin | corrected_phenytoin(measured: Float, albumin: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | corrected_phenytoin_renal | corrected_phenytoin_renal(measured: Float, albumin: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | delta_delta_ratio | delta_delta_ratio(anion_gap: Float, bicarb: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | interpret_delta_delta | interpret_delta_delta(ratio: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | calculated_osmolality | calculated_osmolality(sodium: Float, glucose: Float, bun: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | osmolar_gap | osmolar_gap(measured_osm: Float, sodium: Float, glucose: Float, bun: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | aa_gradient | aa_gradient(fio2: Float, patm: Float, paco2: Float, pao2: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | expected_aa_gradient | expected_aa_gradient(age: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | meld_score | meld_score(creatinine: Float, bilirubin: Float, inr: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | meld_na_score | meld_na_score(meld: Float, sodium: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | crcl_adjusted_bw | crcl_adjusted_bw(age: Float, weight_actual: Float, height_cm: Float, sex: String, serum_cr: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | vancomycin_cl_estimate | vancomycin_cl_estimate(crcl: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | vancomycin_auc_estimate | vancomycin_auc_estimate(daily_dose_mg: Float, crcl: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | aminoglycoside_ei_dose | aminoglycoside_ei_dose(drug_name: String, weight_kg: Float, gfr: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | adjusted_free_fraction | adjusted_free_fraction(fu_normal: Float, albumin: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | demo_elderly_polypharmacy | demo_elderly_polypharmacy() | ghostpharma_engine | Pharmacology | -- |
| fn | demo_elderly_polypharmacy_drugs | demo_elderly_polypharmacy_drugs() | ghostpharma_engine | Pharmacology | -- |
| fn | demo_elderly_polypharmacy_doses | demo_elderly_polypharmacy_doses() | ghostpharma_engine | Pharmacology | -- |
| fn | demo_elderly_polypharmacy_routes | demo_elderly_polypharmacy_routes() | ghostpharma_engine | Pharmacology | -- |
| fn | demo_elderly_polypharmacy_intervals | demo_elderly_polypharmacy_intervals() | ghostpharma_engine | Pharmacology | -- |
| fn | demo_heart_failure | demo_heart_failure() | ghostpharma_engine | Pharmacology | -- |
| fn | demo_heart_failure_drugs | demo_heart_failure_drugs() | ghostpharma_engine | Pharmacology | -- |
| fn | demo_heart_failure_doses | demo_heart_failure_doses() | ghostpharma_engine | Pharmacology | -- |
| fn | demo_heart_failure_routes | demo_heart_failure_routes() | ghostpharma_engine | Pharmacology | -- |
| fn | demo_heart_failure_intervals | demo_heart_failure_intervals() | ghostpharma_engine | Pharmacology | -- |
| fn | demo_hemorrhagic_shock | demo_hemorrhagic_shock() | ghostpharma_engine | Pharmacology | -- |
| fn | demo_hemorrhagic_shock_drugs | demo_hemorrhagic_shock_drugs() | ghostpharma_engine | Pharmacology | -- |
| fn | demo_hemorrhagic_shock_doses | demo_hemorrhagic_shock_doses() | ghostpharma_engine | Pharmacology | -- |
| fn | demo_hemorrhagic_shock_routes | demo_hemorrhagic_shock_routes() | ghostpharma_engine | Pharmacology | -- |
| fn | demo_hemorrhagic_shock_intervals | demo_hemorrhagic_shock_intervals() | ghostpharma_engine | Pharmacology | -- |
| fn | demo_sepsis | demo_sepsis() | ghostpharma_engine | Pharmacology | -- |
| fn | demo_sepsis_drugs | demo_sepsis_drugs() | ghostpharma_engine | Pharmacology | -- |
| fn | demo_sepsis_doses | demo_sepsis_doses() | ghostpharma_engine | Pharmacology | -- |
| fn | demo_sepsis_routes | demo_sepsis_routes() | ghostpharma_engine | Pharmacology | -- |
| fn | demo_sepsis_intervals | demo_sepsis_intervals() | ghostpharma_engine | Pharmacology | -- |
| fn | run_demo | run_demo(scenario: String) | ghostpharma_engine | Pharmacology | -- |
| fn | auc_trapezoidal | auc_trapezoidal(times: Array, concentrations: Array) | ghostpharma_engine | Pharmacology | -- |
| fn | auc_log_linear | auc_log_linear(times: Array, concentrations: Array) | ghostpharma_engine | Pharmacology | -- |
| fn | auc_extrapolated | auc_extrapolated(c_last: Float, ke: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | bioequivalence_check | bioequivalence_check(auc_test: Float, auc_ref: Float, cmax_test: Float, cmax_ref: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | allometric_cl | allometric_cl(cl_ref: Float, weight_kg: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | allometric_vd | allometric_vd(vd_ref: Float, weight_kg: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | geriatric_cl_factor | geriatric_cl_factor(age: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | bayesian_ke_estimate | bayesian_ke_estimate(measured_trough: Float, expected_trough: Float, ke_population: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | tdm_dose_adjust | tdm_dose_adjust(measured: Float, target_low: Float, target_high: Float, current_dose: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | emax_model | emax_model(e0: Float, emax: Float, ec50: Float, n: Float, concentration: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | log_linear_effect | log_linear_effect(m: Float, b: Float, concentration: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | time_above_mic | time_above_mic(concentrations: Array, mic: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | auc_mic_ratio | auc_mic_ratio(auc: Float, mic: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | cmax_mic_ratio | cmax_mic_ratio(cmax: Float, mic: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | hh_rate_alpha | hh_rate_alpha(a: Float, b: Float, state: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | hh_rate_beta | hh_rate_beta(a: Float, b: Float, state: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | hh_conductance_steady_state | hh_conductance_steady_state(alpha: Float, beta: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | hh_tau | hh_tau(alpha: Float, beta: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | enzyme_saturation_cl | enzyme_saturation_cl(cl_max: Float, rate: Float, substrate_conc: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | receptor_occupancy_exp | receptor_occupancy_exp(k_on: Float, concentration: Float, t: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | nca_gate | nca_gate(x: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | nca_gate_bipolar | nca_gate_bipolar(x: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | total_body_water | total_body_water(weight_kg: Float, height_cm: Float, age: Float, sex: String) | ghostpharma_engine | Pharmacology | -- |
| fn | free_water_deficit | free_water_deficit(tbw: Float, sodium: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | sodium_correction_rate | sodium_correction_rate(current_na: Float, target_na: Float, hours: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | estimated_blood_volume | estimated_blood_volume(weight_kg: Float, sex: String) | ghostpharma_engine | Pharmacology | -- |
| fn | estimated_blood_loss | estimated_blood_loss(ebv: Float, hct_initial: Float, hct_current: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | cardiac_output | cardiac_output(heart_rate: Float, stroke_volume: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | cardiac_index | cardiac_index(co: Float, bsa: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | svr | svr(map: Float, cvp: Float, co: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | fick_cardiac_output | fick_cardiac_output(vo2: Float, cao2: Float, cvo2: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | oxygen_content | oxygen_content(hemoglobin: Float, sat_pct: Float, pao2: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | oxygen_delivery | oxygen_delivery(co: Float, cao2: Float) | ghostpharma_engine | Pharmacology | -- |
| fn | ghostpharma_function_count | ghostpharma_function_count() | ghostpharma_engine | Pharmacology | -- |
| fn | bsa_mosteller | bsa_mosteller(height_cm: Float, weight_kg: Float) | dosing | Pharmacology | -- |
| fn | bsa_dubois | bsa_dubois(height_cm: Float, weight_kg: Float) | dosing | Pharmacology | -- |
| fn | ibw_male | ibw_male(height_inches: Float) | dosing | Pharmacology | -- |
| fn | ibw_female | ibw_female(height_inches: Float) | dosing | Pharmacology | -- |
| fn | abw | abw(ibw_kg: Float, actual_weight_kg: Float) | dosing | Pharmacology | -- |
| fn | bmi | bmi(weight_kg: Float, height_m: Float) | dosing | Pharmacology | -- |
| fn | bmi_classification | bmi_classification(bmi_val: Float) | dosing | Pharmacology | -- |
| fn | cockcroft_gault | cockcroft_gault(age: Float, weight_kg: Float, scr: Float, is_female: Bool) | dosing | Pharmacology | -- |
| fn | cockcroft_gault_ibw | cockcroft_gault_ibw(age: Float, ibw_kg: Float, scr: Float, is_female: Bool) | dosing | Pharmacology | -- |
| fn | ckd_epi_2021 | ckd_epi_2021(age: Float, scr: Float, is_female: Bool) | dosing | Pharmacology | -- |
| fn | schwartz_pediatric | schwartz_pediatric(height_cm: Float, scr: Float) | dosing | Pharmacology | -- |
| fn | renal_dose_adjustment | renal_dose_adjustment(normal_dose: Float, crcl: Float, cutoff_high: Float, cutoff_mid: Float, cutoff_low: Float, frac_high: Float, frac_mid: Float, frac_low: Float, frac_below: Float) | dosing | Pharmacology | -- |
| fn | ckd_stage | ckd_stage(gfr: Float) | dosing | Pharmacology | -- |
| fn | child_pugh_score | child_pugh_score(encephalopathy_grade: Int, ascites_grade: Int, bilirubin: Float, albumin: Float, inr: Float) | dosing | Pharmacology | -- |
| fn | child_pugh_class | child_pugh_class(score: Int) | dosing | Pharmacology | -- |
| fn | meld_score | meld_score(bilirubin: Float, inr: Float, creatinine: Float) | dosing | Pharmacology | -- |
| fn | meld_na | meld_na(meld_val: Float, sodium: Float) | dosing | Pharmacology | -- |
| fn | clark_rule | clark_rule(adult_dose: Float, child_weight_lbs: Float) | dosing | Pharmacology | -- |
| fn | young_rule | young_rule(adult_dose: Float, child_age_years: Float) | dosing | Pharmacology | -- |
| fn | fried_rule | fried_rule(adult_dose: Float, child_age_months: Float) | dosing | Pharmacology | -- |
| fn | bsa_dosing | bsa_dosing(adult_dose: Float, child_bsa: Float) | dosing | Pharmacology | -- |
| struct | GentamicinDose | struct GentamicinDose | dosing | Pharmacology | -- |
| fn | gentamicin_traditional | gentamicin_traditional(weight_kg: Float, crcl: Float) | dosing | Pharmacology | -- |
| fn | vancomycin_auc_dosing | vancomycin_auc_dosing(target_auc: Float, clearance_l_hr: Float) | dosing | Pharmacology | -- |
| fn | vancomycin_trough_to_auc | vancomycin_trough_to_auc(trough: Float, dose_mg: Float, interval_hr: Float, vd_liters: Float, ke: Float) | dosing | Pharmacology | -- |
| fn | drip_rate_ml_hr | drip_rate_ml_hr(total_volume_ml: Float, hours: Float) | dosing | Pharmacology | -- |
| fn | drip_rate_gtt_min | drip_rate_gtt_min(total_volume_ml: Float, hours: Float, drop_factor: Float) | dosing | Pharmacology | -- |
| fn | mcg_kg_min_to_ml_hr | mcg_kg_min_to_ml_hr(dose_mcg_kg_min: Float, weight_kg: Float, concentration_mcg_ml: Float) | dosing | Pharmacology | -- |
| fn | mg_hr_to_ml_hr | mg_hr_to_ml_hr(dose_mg_hr: Float, concentration_mg_ml: Float) | dosing | Pharmacology | -- |
| fn | units_hr_to_ml_hr | units_hr_to_ml_hr(dose_units_hr: Float, concentration_units_ml: Float) | dosing | Pharmacology | -- |
| fn | ml_hr_to_mcg_kg_min | ml_hr_to_mcg_kg_min(rate_ml_hr: Float, weight_kg: Float, concentration_mcg_ml: Float) | dosing | Pharmacology | -- |
| fn | infusion_time_hours | infusion_time_hours(total_volume_ml: Float, rate_ml_hr: Float) | dosing | Pharmacology | -- |
| fn | corrected_sodium | corrected_sodium(measured_na: Float, glucose: Float) | dosing | Pharmacology | -- |
| fn | corrected_calcium | corrected_calcium(measured_ca: Float, albumin: Float) | dosing | Pharmacology | -- |
| fn | corrected_phenytoin | corrected_phenytoin(measured_level: Float, albumin: Float) | dosing | Pharmacology | -- |
| fn | corrected_phenytoin_renal | corrected_phenytoin_renal(measured_level: Float, albumin: Float) | dosing | Pharmacology | -- |
| fn | anion_gap | anion_gap(na: Float, cl: Float, hco3: Float) | dosing | Pharmacology | -- |
| fn | corrected_anion_gap | corrected_anion_gap(ag: Float, albumin: Float) | dosing | Pharmacology | -- |
| fn | delta_delta | delta_delta(ag: Float, hco3: Float) | dosing | Pharmacology | -- |
| fn | delta_delta_interpret | delta_delta_interpret(ratio: Float) | dosing | Pharmacology | -- |
| fn | calculated_osmolality | calculated_osmolality(na: Float, glucose: Float, bun: Float) | dosing | Pharmacology | -- |
| fn | osmolal_gap | osmolal_gap(measured_osm: Float, calculated_osm: Float) | dosing | Pharmacology | -- |
| fn | calculated_osmolality_with_ethanol | calculated_osmolality_with_ethanol(na: Float, glucose: Float, bun: Float, ethanol_mg_dl: Float) | dosing | Pharmacology | -- |
| fn | mg_per_kg | mg_per_kg(dose_mg: Float, weight_kg: Float) | dosing | Pharmacology | -- |
| fn | dose_from_mg_kg | dose_from_mg_kg(mg_kg: Float, weight_kg: Float) | dosing | Pharmacology | -- |
| fn | mg_per_m2 | mg_per_m2(dose_mg: Float, bsa: Float) | dosing | Pharmacology | -- |
| fn | dose_from_mg_m2 | dose_from_mg_m2(mg_m2: Float, bsa: Float) | dosing | Pharmacology | -- |
| fn | dose_per_administration | dose_per_administration(daily_total_mg: Float, doses_per_day: Float) | dosing | Pharmacology | -- |
| fn | dose_with_cap | dose_with_cap(calculated_dose: Float, max_dose: Float) | dosing | Pharmacology | -- |
| fn | round_dose | round_dose(dose: Float, increment: Float) | dosing | Pharmacology | -- |
| fn | normal_scr_male | normal_scr_male() | dosing | Pharmacology | -- |
| fn | normal_scr_female | normal_scr_female() | dosing | Pharmacology | -- |
| fn | normal_bun | normal_bun() | dosing | Pharmacology | -- |
| fn | normal_sodium | normal_sodium() | dosing | Pharmacology | -- |
| fn | normal_potassium | normal_potassium() | dosing | Pharmacology | -- |
| fn | normal_chloride | normal_chloride() | dosing | Pharmacology | -- |
| fn | normal_bicarbonate | normal_bicarbonate() | dosing | Pharmacology | -- |
| fn | normal_calcium | normal_calcium() | dosing | Pharmacology | -- |
| fn | normal_albumin | normal_albumin() | dosing | Pharmacology | -- |
| fn | normal_bilirubin | normal_bilirubin() | dosing | Pharmacology | -- |
| fn | normal_inr | normal_inr() | dosing | Pharmacology | -- |
| fn | normal_glucose | normal_glucose() | dosing | Pharmacology | -- |
| struct | HeparinProtocol | struct HeparinProtocol | dosing | Pharmacology | -- |
| fn | heparin_dvt_pe | heparin_dvt_pe(weight_kg: Float) | dosing | Pharmacology | -- |
| fn | heparin_acs | heparin_acs(weight_kg: Float) | dosing | Pharmacology | -- |
| fn | insulin_drip_dka | insulin_drip_dka(weight_kg: Float) | dosing | Pharmacology | -- |
| fn | insulin_correction | insulin_correction(current_glucose: Float, target_glucose: Float, total_daily_dose: Float) | dosing | Pharmacology | -- |
| fn | insulin_starting_dose | insulin_starting_dose(weight_kg: Float) | dosing | Pharmacology | -- |
| fn | warfarin_weekly_dose | warfarin_weekly_dose(daily_mg: Float) | dosing | Pharmacology | -- |
| fn | inr_interpretation | inr_interpretation(inr: Float, target_low: Float, target_high: Float) | dosing | Pharmacology | -- |
| fn | digoxin_loading_iv | digoxin_loading_iv(lean_weight_kg: Float) | dosing | Pharmacology | -- |
| fn | digoxin_loading_po | digoxin_loading_po(lean_weight_kg: Float) | dosing | Pharmacology | -- |
| fn | digoxin_daily_loss_pct | digoxin_daily_loss_pct(crcl: Float) | dosing | Pharmacology | -- |
| fn | digoxin_maintenance | digoxin_maintenance(loading_dose_mcg: Float, crcl: Float) | dosing | Pharmacology | -- |
| fn | phenytoin_daily_dose | phenytoin_daily_dose(vmax: Float, km: Float, target_css: Float, salt_factor: Float, bioavail: Float) | dosing | Pharmacology | -- |
| fn | phenytoin_km_from_two_levels | phenytoin_km_from_two_levels(dose1: Float, css1: Float, dose2: Float, css2: Float) | dosing | Pharmacology | -- |
| fn | phenytoin_vmax_from_two_levels | phenytoin_vmax_from_two_levels(dose1: Float, css1: Float, km: Float) | dosing | Pharmacology | -- |
| fn | theophylline_loading | theophylline_loading(target_conc: Float, current_conc: Float, weight_kg: Float) | dosing | Pharmacology | -- |
| fn | theophylline_infusion_rate | theophylline_infusion_rate(clearance_l_hr: Float, target_css: Float) | dosing | Pharmacology | -- |
| fn | theophylline_cl_nonsmoker | theophylline_cl_nonsmoker() | dosing | Pharmacology | -- |
| fn | theophylline_cl_smoker | theophylline_cl_smoker() | dosing | Pharmacology | -- |
| fn | theophylline_cl_chf | theophylline_cl_chf() | dosing | Pharmacology | -- |
| fn | theophylline_cl_cirrhosis | theophylline_cl_cirrhosis() | dosing | Pharmacology | -- |
| fn | theophylline_cl_child_1_to_9 | theophylline_cl_child_1_to_9() | dosing | Pharmacology | -- |
| fn | lithium_daily_dose | lithium_daily_dose(crcl: Float, target_css: Float) | dosing | Pharmacology | -- |
| fn | lithium_meq_to_mg_carbonate | lithium_meq_to_mg_carbonate(meq: Float) | dosing | Pharmacology | -- |
| fn | enoxaparin_treatment | enoxaparin_treatment(weight_kg: Float, crcl: Float) | dosing | Pharmacology | -- |
| fn | enoxaparin_treatment_interval | enoxaparin_treatment_interval(crcl: Float) | dosing | Pharmacology | -- |
| fn | enoxaparin_prophylaxis | enoxaparin_prophylaxis(crcl: Float) | dosing | Pharmacology | -- |
| fn | anti_xa_therapeutic_range_bid | anti_xa_therapeutic_range_bid() | dosing | Pharmacology | -- |
| fn | anti_xa_therapeutic_range_qd | anti_xa_therapeutic_range_qd() | dosing | Pharmacology | -- |
| fn | obesity_dosing_weight | obesity_dosing_weight(drug_class: String, ibw_kg: Float, actual_kg: Float) | dosing | Pharmacology | -- |
| fn | celsius_to_fahrenheit | celsius_to_fahrenheit(c: Float) | dosing | Pharmacology | -- |
| fn | fahrenheit_to_celsius | fahrenheit_to_celsius(f: Float) | dosing | Pharmacology | -- |
| fn | lbs_to_kg | lbs_to_kg(lbs: Float) | dosing | Pharmacology | -- |
| fn | kg_to_lbs | kg_to_lbs(kg: Float) | dosing | Pharmacology | -- |
| fn | inches_to_cm | inches_to_cm(inches: Float) | dosing | Pharmacology | -- |
| fn | cm_to_inches | cm_to_inches(cm: Float) | dosing | Pharmacology | -- |
| fn | feet_inches_to_inches | feet_inches_to_inches(feet: Float, inches: Float) | dosing | Pharmacology | -- |
| fn | glucose_mg_to_mmol | glucose_mg_to_mmol(mg_dl: Float) | dosing | Pharmacology | -- |
| fn | glucose_mmol_to_mg | glucose_mmol_to_mg(mmol_l: Float) | dosing | Pharmacology | -- |
| fn | creatinine_mg_to_umol | creatinine_mg_to_umol(mg_dl: Float) | dosing | Pharmacology | -- |
| fn | creatinine_umol_to_mg | creatinine_umol_to_mg(umol_l: Float) | dosing | Pharmacology | -- |
| fn | bilirubin_mg_to_umol | bilirubin_mg_to_umol(mg_dl: Float) | dosing | Pharmacology | -- |
| fn | calcium_mg_to_mmol | calcium_mg_to_mmol(mg_dl: Float) | dosing | Pharmacology | -- |
| fn | meq_equals_mmol_monovalent | meq_equals_mmol_monovalent() | dosing | Pharmacology | -- |
| fn | dosing_function_count | dosing_function_count() | dosing | Pharmacology | -- |
| struct | PKParameters | struct PKParameters | adme | Pharmacology | -- |
| fn | pkp | pkp(dn: String, f: Float, tm: Float, hl: Float, vd: Float, cl: Float, pb: Float, re: Float, he: Float, ci: String) | adme | Pharmacology | -- |
| fn | bioavailability | bioavailability(auc_oral: Float, auc_iv: Float, dose_iv: Float, dose_oral: Float) | adme | Pharmacology | -- |
| fn | absorption_rate | absorption_rate(ka: Float, dose: Float, f: Float, t: Float) | adme | Pharmacology | -- |
| fn | amount_absorbed | amount_absorbed(dose: Float, f: Float, ka: Float, t: Float) | adme | Pharmacology | -- |
| fn | tmax | tmax(ka: Float, ke: Float) | adme | Pharmacology | -- |
| fn | volume_of_distribution | volume_of_distribution(dose: Float, c0: Float) | adme | Pharmacology | -- |
| fn | free_concentration | free_concentration(total_conc: Float, protein_binding_fraction: Float) | adme | Pharmacology | -- |
| fn | vd_apparent | vd_apparent(vd_unbound: Float, fu_plasma: Float, fu_tissue: Float) | adme | Pharmacology | -- |
| fn | displaced_free_fraction | displaced_free_fraction(original_fu: Float, displacement_factor: Float) | adme | Pharmacology | -- |
| fn | bbb_likely | bbb_likely(log_p: Float, molecular_weight: Float) | adme | Pharmacology | -- |
| fn | extraction_ratio | extraction_ratio(bioavailability_f: Float) | adme | Pharmacology | -- |
| fn | hepatic_clearance | hepatic_clearance(hepatic_blood_flow: Float, extraction: Float) | adme | Pharmacology | -- |
| fn | normal_hepatic_blood_flow | normal_hepatic_blood_flow() | adme | Pharmacology | -- |
| fn | intrinsic_clearance | intrinsic_clearance(hepatic_flow: Float, extraction: Float) | adme | Pharmacology | -- |
| fn | phase1_description | phase1_description() | adme | Pharmacology | -- |
| fn | phase2_description | phase2_description() | adme | Pharmacology | -- |
| fn | elimination_rate_constant | elimination_rate_constant(t_half: Float) | adme | Pharmacology | -- |
| fn | half_life_from_cl_vd | half_life_from_cl_vd(clearance: Float, vd: Float) | adme | Pharmacology | -- |
| fn | total_clearance | total_clearance(ke: Float, vd: Float) | adme | Pharmacology | -- |
| fn | renal_clearance | renal_clearance(total_cl: Float, fraction_renal: Float) | adme | Pharmacology | -- |
| fn | nonrenal_clearance | nonrenal_clearance(total_cl: Float, renal_cl: Float) | adme | Pharmacology | -- |
| fn | concentration_iv | concentration_iv(dose: Float, vd: Float, ke: Float, t: Float) | adme | Pharmacology | -- |
| fn | concentration_oral | concentration_oral(dose: Float, f: Float, vd: Float, ka: Float, ke: Float, t: Float) | adme | Pharmacology | -- |
| fn | auc_iv | auc_iv(dose: Float, clearance: Float) | adme | Pharmacology | -- |
| fn | auc_oral | auc_oral(dose: Float, f: Float, clearance: Float) | adme | Pharmacology | -- |
| fn | accumulation_factor | accumulation_factor(ke: Float, tau: Float) | adme | Pharmacology | -- |
| fn | css_average | css_average(dose: Float, f: Float, clearance: Float, tau: Float) | adme | Pharmacology | -- |
| fn | css_max | css_max(dose: Float, f: Float, vd: Float, ke: Float, tau: Float) | adme | Pharmacology | -- |
| fn | css_min | css_min(css_max_val: Float, ke: Float, tau: Float) | adme | Pharmacology | -- |
| fn | time_to_steady_state | time_to_steady_state(t_half: Float) | adme | Pharmacology | -- |
| fn | doses_to_steady_state | doses_to_steady_state(t_half: Float, tau: Float) | adme | Pharmacology | -- |
| fn | loading_dose | loading_dose(target_css: Float, vd: Float, f: Float) | adme | Pharmacology | -- |
| fn | maintenance_dose | maintenance_dose(target_css: Float, clearance: Float, tau: Float, f: Float) | adme | Pharmacology | -- |
| fn | cockcroft_gault | cockcroft_gault(age: Float, weight_kg: Float, serum_cr: Float, is_female: Bool) | adme | Pharmacology | -- |
| fn | renal_dose_fraction | renal_dose_fraction(crcl_patient: Float, crcl_normal: Float, fraction_renal: Float) | adme | Pharmacology | -- |
| fn | ckd_stage_by_gfr | ckd_stage_by_gfr(gfr: Float) | adme | Pharmacology | -- |
| fn | child_pugh_class | child_pugh_class(score: Int) | adme | Pharmacology | -- |
| fn | two_compartment_iv | two_compartment_iv(a_coeff: Float, alpha: Float, b_coeff: Float, beta: Float, t: Float) | adme | Pharmacology | -- |
| fn | distribution_half_life | distribution_half_life(alpha: Float) | adme | Pharmacology | -- |
| fn | terminal_half_life | terminal_half_life(beta: Float) | adme | Pharmacology | -- |
| fn | k21_from_macro | k21_from_macro(a_coeff: Float, alpha: Float, b_coeff: Float, beta: Float) | adme | Pharmacology | -- |
| fn | k10_from_macro | k10_from_macro(alpha: Float, beta: Float, k21: Float) | adme | Pharmacology | -- |
| fn | k12_from_macro | k12_from_macro(alpha: Float, beta: Float, k21: Float, k10: Float) | adme | Pharmacology | -- |
| fn | tdm_drug_requires_monitoring | tdm_drug_requires_monitoring(drug_name: String) | adme | Pharmacology | -- |
| fn | tdm_therapeutic_range | tdm_therapeutic_range(drug_name: String) | adme | Pharmacology | -- |
| fn | adme_function_count | adme_function_count() | adme | Pharmacology | -- |
| fn | typical_value | typical_value(theta: Float, cov_effect: Float) | population_pk | Pharmacology | -- |
| fn | individual_parameter | individual_parameter(tv: Float, eta: Float) | population_pk | Pharmacology | -- |
| fn | residual_proportional | residual_proportional(predicted: Float, epsilon: Float) | population_pk | Pharmacology | -- |
| fn | residual_additive | residual_additive(predicted: Float, epsilon: Float) | population_pk | Pharmacology | -- |
| fn | residual_combined | residual_combined(predicted: Float, eps_prop: Float, eps_add: Float) | population_pk | Pharmacology | -- |
| fn | residual_exponential | residual_exponential(predicted: Float, epsilon: Float) | population_pk | Pharmacology | -- |
| fn | weight_allometric_cl | weight_allometric_cl(cl_ref: Float, weight_kg: Float) | population_pk | Pharmacology | -- |
| fn | weight_allometric_vd | weight_allometric_vd(vd_ref: Float, weight_kg: Float) | population_pk | Pharmacology | -- |
| fn | age_maturation | age_maturation(pma_weeks: Float, tm50: Float, hill: Float) | population_pk | Pharmacology | -- |
| fn | renal_covariate | renal_covariate(cl_ref: Float, crcl: Float) | population_pk | Pharmacology | -- |
| fn | renal_covariate_mixed | renal_covariate_mixed(cl_nonrenal: Float, cl_renal_ref: Float, crcl: Float) | population_pk | Pharmacology | -- |
| fn | cyp2d6_phenotype | cyp2d6_phenotype(phenotype: String) | population_pk | Pharmacology | -- |
| fn | cyp2c19_phenotype | cyp2c19_phenotype(phenotype: String) | population_pk | Pharmacology | -- |
| fn | cyp3a_activity | cyp3a_activity(phenotype: String) | population_pk | Pharmacology | -- |
| fn | bsa_covariate | bsa_covariate(param_ref: Float, bsa: Float) | population_pk | Pharmacology | -- |
| fn | sex_effect | sex_effect(param_ref: Float, is_female: Bool, female_factor: Float) | population_pk | Pharmacology | -- |
| fn | power_covariate | power_covariate(theta: Float, covariate: Float, reference: Float, exponent: Float) | population_pk | Pharmacology | -- |
| fn | iiv_cv_from_omega | iiv_cv_from_omega(omega_sq: Float) | population_pk | Pharmacology | -- |
| fn | iiv_omega_from_cv | iiv_omega_from_cv(cv_pct: Float) | population_pk | Pharmacology | -- |
| fn | shrinkage | shrinkage(omega_sq: Float, se_eta_sq: Float) | population_pk | Pharmacology | -- |
| fn | cv_percent | cv_percent(sd: Float, mean_val: Float) | population_pk | Pharmacology | -- |
| fn | rse_percent | rse_percent(se: Float, estimate: Float) | population_pk | Pharmacology | -- |
| fn | auc_ratio | auc_ratio(auc_test: Float, auc_ref: Float) | population_pk | Pharmacology | -- |
| fn | cmax_ratio | cmax_ratio(cmax_test: Float, cmax_ref: Float) | population_pk | Pharmacology | -- |
| fn | be_pass | be_pass(lower_ci: Float, upper_ci: Float) | population_pk | Pharmacology | -- |
| fn | be_pass_nti | be_pass_nti(lower_ci: Float, upper_ci: Float) | population_pk | Pharmacology | -- |
| fn | be_assess | be_assess(gmr: Float, lower_ci: Float, upper_ci: Float) | population_pk | Pharmacology | -- |
| fn | pediatric_cl | pediatric_cl(adult_cl: Float, weight_kg: Float, pma_weeks: Float, tm50: Float, hill: Float) | population_pk | Pharmacology | -- |
| fn | pediatric_cl_simple | pediatric_cl_simple(adult_cl: Float, age_years: Float) | population_pk | Pharmacology | -- |
| fn | neonatal_cl_fraction | neonatal_cl_fraction(postnatal_days: Float) | population_pk | Pharmacology | -- |
| fn | geriatric_cl | geriatric_cl(adult_cl: Float, age: Float) | population_pk | Pharmacology | -- |
| fn | hepatic_scaling | hepatic_scaling(cl_ref: Float, child_pugh_class: String) | population_pk | Pharmacology | -- |
| fn | obesity_dosing_weight | obesity_dosing_weight(drug_class: String) | population_pk | Pharmacology | -- |
| fn | pregnancy_pk_changes | pregnancy_pk_changes() | population_pk | Pharmacology | -- |
| fn | box_muller | box_muller(u1: Float, u2: Float) | population_pk | Pharmacology | -- |
| fn | log_normal_sample | log_normal_sample(mean_val: Float, omega_sq: Float, z: Float) | population_pk | Pharmacology | -- |
| fn | prediction_interval_lower | prediction_interval_lower(mean_val: Float, omega_sq: Float) | population_pk | Pharmacology | -- |
| fn | prediction_interval_upper | prediction_interval_upper(mean_val: Float, omega_sq: Float) | population_pk | Pharmacology | -- |
| fn | geometric_mean_2 | geometric_mean_2(a: Float, b: Float) | population_pk | Pharmacology | -- |
| fn | geometric_cv | geometric_cv(omega_sq: Float) | population_pk | Pharmacology | -- |
| fn | aic | aic(neg2ll: Float, n_params: Float) | population_pk | Pharmacology | -- |
| fn | bic | bic(neg2ll: Float, n_params: Float, n_obs: Float) | population_pk | Pharmacology | -- |
| fn | lrt_significant_p05 | lrt_significant_p05(delta_ofv: Float, df: Int) | population_pk | Pharmacology | -- |
| fn | structural_model | structural_model(name: String) | population_pk | Pharmacology | -- |
| fn | absorption_model | absorption_model(name: String) | population_pk | Pharmacology | -- |
| fn | popPK_function_count | popPK_function_count() | population_pk | Pharmacology | -- |
| struct | OrganMarker | struct OrganMarker | toxicology | Pharmacology | -- |
| struct | Toxidrome | struct Toxidrome | toxicology | Pharmacology | -- |
| struct | AntidoteEntry | struct AntidoteEntry | toxicology | Pharmacology | -- |
| struct | NACProtocol | struct NACProtocol | toxicology | Pharmacology | -- |
| struct | QTDrug | struct QTDrug | toxicology | Pharmacology | -- |
| fn | dose_response_sigmoid | dose_response_sigmoid(dose: Float, emax: Float, ec50: Float, hill_n: Float) | toxicology | Pharmacology | -- |
| fn | therapeutic_index | therapeutic_index(ld50: Float, ed50: Float) | toxicology | Pharmacology | -- |
| fn | margin_of_safety | margin_of_safety(ld01: Float, ed99: Float) | toxicology | Pharmacology | -- |
| fn | noael_to_human_dose | noael_to_human_dose(noael_mg_kg: Float, animal_weight_kg: Float, human_weight_kg: Float) | toxicology | Pharmacology | -- |
| fn | dose_response_log_linear | dose_response_log_linear(log_dose: Float, slope: Float, intercept: Float) | toxicology | Pharmacology | -- |
| fn | certain_safety_factor | certain_safety_factor(ed99: Float, ld01: Float) | toxicology | Pharmacology | -- |
| fn | om | om(org: String, bio: String, nl: Float, nh: Float, u: String, tt: Float, mech: String, drugs: String, cite: String) | toxicology | Pharmacology | -- |
| fn | hepatotoxicity | hepatotoxicity(marker: String) | toxicology | Pharmacology | -- |
| fn | hys_law | hys_law(alt: Float, alt_uln: Float, bilirubin: Float, bili_uln: Float, alp: Float, alp_uln: Float) | toxicology | Pharmacology | -- |
| fn | nephrotoxicity | nephrotoxicity(marker: String) | toxicology | Pharmacology | -- |
| fn | cardiotoxicity | cardiotoxicity(marker: String) | toxicology | Pharmacology | -- |
| fn | neurotoxicity | neurotoxicity(marker: String) | toxicology | Pharmacology | -- |
| fn | hematotoxicity | hematotoxicity(marker: String) | toxicology | Pharmacology | -- |
| fn | qtc_bazett | qtc_bazett(qt_ms: Float, rr_ms: Float) | toxicology | Pharmacology | -- |
| fn | qtc_fridericia | qtc_fridericia(qt_ms: Float, rr_ms: Float) | toxicology | Pharmacology | -- |
| fn | qt_risk_assessment | qt_risk_assessment(qtc: Float) | toxicology | Pharmacology | -- |
| fn | qt_drug | qt_drug(name: String) | toxicology | Pharmacology | -- |
| fn | toxidrome | toxidrome(name: String) | toxicology | Pharmacology | -- |
| fn | antidote | antidote(poison: String) | toxicology | Pharmacology | -- |
| fn | rucam_score | rucam_score(time_to_onset: Int, course_after_cessation: Int, risk_factors: Int, concomitant_drugs: Int, exclusion_of_other_causes: Int, previous_info_on_drug: Int, rechallenge: Int) | toxicology | Pharmacology | -- |
| fn | dili_pattern | dili_pattern(alt: Float, alt_uln: Float, alp: Float, alp_uln: Float) | toxicology | Pharmacology | -- |
| fn | rumack_matthew | rumack_matthew(apap_level: Float, hours_post_ingestion: Float) | toxicology | Pharmacology | -- |
| fn | nac_protocol | nac_protocol(weight_kg: Float) | toxicology | Pharmacology | -- |
| fn | apap_toxic_dose | apap_toxic_dose(weight_kg: Float) | toxicology | Pharmacology | -- |
| fn | napqi_pathway | napqi_pathway() | toxicology | Pharmacology | -- |
| fn | hr_to_rr | hr_to_rr(heart_rate_bpm: Float) | toxicology | Pharmacology | -- |
| fn | body_surface_area | body_surface_area(height_cm: Float, weight_kg: Float) | toxicology | Pharmacology | -- |
| fn | anion_gap | anion_gap(sodium: Float, chloride: Float, bicarbonate: Float) | toxicology | Pharmacology | -- |
| fn | osmol_gap | osmol_gap(measured_osm: Float, sodium: Float, bun: Float, glucose: Float, ethanol: Float) | toxicology | Pharmacology | -- |
| fn | sat_gap | sat_gap(spo2: Float, sao2: Float) | toxicology | Pharmacology | -- |
| fn | toxicity_rating | toxicity_rating(ld50_mg_kg: Float) | toxicology | Pharmacology | -- |
| fn | decontamination | decontamination(hours_since_ingestion: Float, substance_type: String) | toxicology | Pharmacology | -- |
| fn | toxicology_function_count | toxicology_function_count() | toxicology | Pharmacology | -- |
| fn | toxicology_struct_count | toxicology_struct_count() | toxicology | Pharmacology | -- |
| fn | toxicology_marker_count | toxicology_marker_count() | toxicology | Pharmacology | -- |
| fn | toxicology_toxidrome_count | toxicology_toxidrome_count() | toxicology | Pharmacology | -- |
| fn | toxicology_antidote_count | toxicology_antidote_count() | toxicology | Pharmacology | -- |
| fn | toxicology_qt_drug_count | toxicology_qt_drug_count() | toxicology | Pharmacology | -- |
| struct | LabTest | struct LabTest | clinical_labs | Physiology | -- |
| struct | LabPattern | struct LabPattern | clinical_labs | Physiology | -- |
| struct | UrinalysisComponent | struct UrinalysisComponent | clinical_labs | Physiology | -- |
| struct | LabCalculation | struct LabCalculation | clinical_labs | Physiology | -- |
| fn | lab | lab(tn: String, u: String, nl: Float, nh: Float, cl: Float, ch: Float, cs: String, ci: String) | clinical_labs | Physiology | -- |
| fn | pattern | pattern(pn: String, cat: String, cr: String, interp: String, diff: String, ci: String) | clinical_labs | Physiology | -- |
| fn | ua_component | ua_component(cn: String, nv: String, ab: String, meth: String, ci: String) | clinical_labs | Physiology | -- |
| fn | calc | calc(cn: String, f: String, nr: String, interp: String, lim: String, ci: String) | clinical_labs | Physiology | -- |
| fn | lookup_cbc | lookup_cbc(test: String) | clinical_labs | Physiology | -- |
| fn | lookup_wbc_differential | lookup_wbc_differential(cell: String) | clinical_labs | Physiology | -- |
| fn | calculate_anc | calculate_anc(wbc: Float, segs_pct: Float, bands_pct: Float) | clinical_labs | Physiology | -- |
| fn | classify_anc | classify_anc(anc: Float) | clinical_labs | Physiology | -- |
| fn | reticulocyte_maturation_factor | reticulocyte_maturation_factor(hct: Float) | clinical_labs | Physiology | -- |
| fn | calculate_rpi | calculate_rpi(retic_pct: Float, patient_hct: Float, normal_hct: Float) | clinical_labs | Physiology | -- |
| fn | classify_rpi | classify_rpi(rpi: Float) | clinical_labs | Physiology | -- |
| fn | cbc_test_count | cbc_test_count() | clinical_labs | Physiology | -- |
| fn | wbc_differential_count | wbc_differential_count() | clinical_labs | Physiology | -- |
| fn | lookup_cmp | lookup_cmp(test: String) | clinical_labs | Physiology | -- |
| fn | cmp_test_count | cmp_test_count() | clinical_labs | Physiology | -- |
| fn | calculate_anion_gap | calculate_anion_gap(na: Float, cl: Float, hco3: Float) | clinical_labs | Physiology | -- |
| fn | classify_anion_gap | classify_anion_gap(ag: Float) | clinical_labs | Physiology | -- |
| fn | calculate_corrected_calcium | calculate_corrected_calcium(measured_ca: Float, albumin: Float) | clinical_labs | Physiology | -- |
| fn | calculate_bun_creatinine_ratio | calculate_bun_creatinine_ratio(bun: Float, creatinine: Float) | clinical_labs | Physiology | -- |
| fn | classify_bun_creatinine_ratio | classify_bun_creatinine_ratio(ratio: Float) | clinical_labs | Physiology | -- |
| fn | calculate_cockcroft_gault | calculate_cockcroft_gault(age: Float, weight_kg: Float, creatinine: Float, is_female: Bool) | clinical_labs | Physiology | -- |
| fn | classify_gfr | classify_gfr(gfr: Float) | clinical_labs | Physiology | -- |
| fn | calculate_serum_osmolality | calculate_serum_osmolality(na: Float, glucose: Float, bun: Float) | clinical_labs | Physiology | -- |
| fn | classify_osmolality | classify_osmolality(osm: Float) | clinical_labs | Physiology | -- |
| fn | lookup_lft_pattern | lookup_lft_pattern(name: String) | clinical_labs | Physiology | -- |
| fn | calculate_r_factor | calculate_r_factor(alt: Float, alt_uln: Float, alp: Float, alp_uln: Float) | clinical_labs | Physiology | -- |
| fn | classify_r_factor | classify_r_factor(r: Float) | clinical_labs | Physiology | -- |
| fn | classify_meld | classify_meld(meld: Float) | clinical_labs | Physiology | -- |
| fn | lft_pattern_count | lft_pattern_count() | clinical_labs | Physiology | -- |
| fn | lookup_coagulation | lookup_coagulation(test: String) | clinical_labs | Physiology | -- |
| fn | coagulation_test_count | coagulation_test_count() | clinical_labs | Physiology | -- |
| fn | lookup_dic_criteria | lookup_dic_criteria(component: String) | clinical_labs | Physiology | -- |
| fn | dic_criteria_count | dic_criteria_count() | clinical_labs | Physiology | -- |
| fn | lookup_thyroid | lookup_thyroid(test: String) | clinical_labs | Physiology | -- |
| fn | thyroid_test_count | thyroid_test_count() | clinical_labs | Physiology | -- |
| fn | lookup_thyroid_pattern | lookup_thyroid_pattern(name: String) | clinical_labs | Physiology | -- |
| fn | thyroid_pattern_count | thyroid_pattern_count() | clinical_labs | Physiology | -- |
| fn | lookup_cardiac | lookup_cardiac(test: String) | clinical_labs | Physiology | -- |
| fn | cardiac_test_count | cardiac_test_count() | clinical_labs | Physiology | -- |
| fn | lookup_cardiac_pattern | lookup_cardiac_pattern(name: String) | clinical_labs | Physiology | -- |
| fn | cardiac_pattern_count | cardiac_pattern_count() | clinical_labs | Physiology | -- |
| fn | lookup_lipid | lookup_lipid(test: String) | clinical_labs | Physiology | -- |
| fn | lipid_test_count | lipid_test_count() | clinical_labs | Physiology | -- |
| fn | calculate_friedewald_ldl | calculate_friedewald_ldl(total_chol: Float, hdl: Float, trig: Float) | clinical_labs | Physiology | -- |
| fn | friedewald_valid | friedewald_valid(trig: Float) | clinical_labs | Physiology | -- |
| fn | calculate_non_hdl | calculate_non_hdl(total_chol: Float, hdl: Float) | clinical_labs | Physiology | -- |
| fn | calculate_tc_hdl_ratio | calculate_tc_hdl_ratio(total_chol: Float, hdl: Float) | clinical_labs | Physiology | -- |
| fn | classify_tc_hdl_ratio | classify_tc_hdl_ratio(ratio: Float) | clinical_labs | Physiology | -- |
| fn | classify_ldl | classify_ldl(ldl: Float) | clinical_labs | Physiology | -- |
| fn | lookup_hba1c | lookup_hba1c(test: String) | clinical_labs | Physiology | -- |
| fn | calculate_eag | calculate_eag(a1c: Float) | clinical_labs | Physiology | -- |
| fn | classify_a1c | classify_a1c(a1c: Float) | clinical_labs | Physiology | -- |
| fn | a1c_to_eag_reference | a1c_to_eag_reference(a1c_pct: Float) | clinical_labs | Physiology | -- |
| fn | lookup_urinalysis | lookup_urinalysis(component: String) | clinical_labs | Physiology | -- |
| fn | urinalysis_component_count | urinalysis_component_count() | clinical_labs | Physiology | -- |
| fn | lookup_iron_study | lookup_iron_study(test: String) | clinical_labs | Physiology | -- |
| fn | iron_study_count | iron_study_count() | clinical_labs | Physiology | -- |
| fn | lookup_iron_pattern | lookup_iron_pattern(name: String) | clinical_labs | Physiology | -- |
| fn | iron_pattern_count | iron_pattern_count() | clinical_labs | Physiology | -- |
| fn | calculate_transferrin_saturation | calculate_transferrin_saturation(serum_iron: Float, tibc: Float) | clinical_labs | Physiology | -- |
| fn | lookup_lab_calculation | lookup_lab_calculation(name: String) | clinical_labs | Physiology | -- |
| fn | lab_calculation_count | lab_calculation_count() | clinical_labs | Physiology | -- |
| fn | total_lab_test_count | total_lab_test_count() | clinical_labs | Physiology | -- |
| fn | total_pattern_count | total_pattern_count() | clinical_labs | Physiology | -- |
| fn | total_urinalysis_count | total_urinalysis_count() | clinical_labs | Physiology | -- |
| fn | total_calculation_count | total_calculation_count() | clinical_labs | Physiology | -- |
| struct | GrowthFactor | struct GrowthFactor | hematology | Physiology | -- |
| fn | gf | gf(addr: Int, nm: String, abbr: String, up: String, gn: String, tgt: String, func: String, clin: String) | hematology | Physiology | -- |
| fn | unknown_growth_factor | unknown_growth_factor() | hematology | Physiology | -- |
| fn | lookup_growth_factor | lookup_growth_factor(addr: Int) | hematology | Physiology | -- |
| fn | growth_factor_count | growth_factor_count() | hematology | Physiology | -- |
| struct | HematopoieticProgenitor | struct HematopoieticProgenitor | hematology | Physiology | -- |
| fn | hp | hp(nm: String, abbr: String, lin: String, cd: String, grt: String, tf: String, rgf: String) | hematology | Physiology | -- |
| fn | lookup_progenitor | lookup_progenitor(abbr: String) | hematology | Physiology | -- |
| fn | progenitor_count | progenitor_count() | hematology | Physiology | -- |
| struct | ErythrocyteProfile | struct ErythrocyteProfile | hematology | Physiology | -- |
| fn | normal_rbc | normal_rbc() | hematology | Physiology | -- |
| struct | RBCDisease | struct RBCDisease | hematology | Physiology | -- |
| fn | rbc_disease | rbc_disease(addr: Int, nm: String, inh: String, def: String, gn: String, chr: String, path: String, clin: String, tx: String) | hematology | Physiology | -- |
| fn | lookup_rbc_disease | lookup_rbc_disease(addr: Int) | hematology | Physiology | -- |
| fn | rbc_disease_count | rbc_disease_count() | hematology | Physiology | -- |
| struct | LeukocyteType | struct LeukocyteType | hematology | Physiology | -- |
| fn | wbc | wbc(addr: Int, nm: String, lin: String, ct: String, pct: String, dia: Float, ls: String, nuc: String, gran: String, func: String, mk: String, elev: String, decr: String) | hematology | Physiology | -- |
| fn | lookup_leukocyte | lookup_leukocyte(addr: Int) | hematology | Physiology | -- |
| fn | leukocyte_count | leukocyte_count() | hematology | Physiology | -- |
| struct | PlateletProfile | struct PlateletProfile | hematology | Physiology | -- |
| fn | normal_platelet | normal_platelet() | hematology | Physiology | -- |
| struct | HemoglobinChain | struct HemoglobinChain | hematology | Physiology | -- |
| fn | hb_chain | hb_chain(addr: Int, nm: String, gn: String, chr: String, up: String, res: Int, heme: String, role: String) | hematology | Physiology | -- |
| fn | lookup_hemoglobin_chain | lookup_hemoglobin_chain(addr: Int) | hematology | Physiology | -- |
| fn | hemoglobin_chain_count | hemoglobin_chain_count() | hematology | Physiology | -- |
| struct | HemoglobinVariant | struct HemoglobinVariant | hematology | Physiology | -- |
| fn | hb_var | hb_var(addr: Int, nm: String, des: String, comp: String, mut_desc: String, path: String, clin: String, prev: String) | hematology | Physiology | -- |
| fn | lookup_hemoglobin_variant | lookup_hemoglobin_variant(addr: Int) | hematology | Physiology | -- |
| fn | hemoglobin_variant_count | hemoglobin_variant_count() | hematology | Physiology | -- |
| struct | OxygenBindingParams | struct OxygenBindingParams | hematology | Physiology | -- |
| fn | normal_o2_binding | normal_o2_binding() | hematology | Physiology | -- |
| fn | fetal_o2_binding | fetal_o2_binding() | hematology | Physiology | -- |
| fn | o2_saturation | o2_saturation(po2: Float, p50: Float, n: Float) | hematology | Physiology | -- |
| struct | ClottingFactor | struct ClottingFactor | hematology | Physiology | -- |
| fn | cf | cf(addr: Int, rn: String, nm: String, up: String, gn: String, chr: String, ft: String, pw: String, ab: String, act: String, cof: String, vk: Bool, dd: String, hl: Float) | hematology | Physiology | -- |
| fn | unknown_clotting_factor | unknown_clotting_factor() | hematology | Physiology | -- |
| fn | lookup_clotting_factor | lookup_clotting_factor(addr: Int) | hematology | Physiology | -- |
| fn | clotting_factor_count | clotting_factor_count() | hematology | Physiology | -- |
| fn | clotting_factor_by_numeral | clotting_factor_by_numeral(rn: String) | hematology | Physiology | -- |
| struct | CoagulationPathway | struct CoagulationPathway | hematology | Physiology | -- |
| fn | lookup_coag_pathway | lookup_coag_pathway(name: String) | hematology | Physiology | -- |
| struct | NaturalAnticoagulant | struct NaturalAnticoagulant | hematology | Physiology | -- |
| fn | nac | nac(addr: Int, nm: String, up: String, gn: String, mech: String, tgt: String, def: String, clin: String) | hematology | Physiology | -- |
| fn | lookup_anticoagulant | lookup_anticoagulant(addr: Int) | hematology | Physiology | -- |
| fn | natural_anticoagulant_count | natural_anticoagulant_count() | hematology | Physiology | -- |
| struct | AnticoagulantDrug | struct AnticoagulantDrug | hematology | Physiology | -- |
| fn | acd | acd(addr: Int, nm: String, dc: String, mech: String, tgt: String, rt: String, mon: String, rev: String, se: String) | hematology | Physiology | -- |
| fn | lookup_anticoagulant_drug | lookup_anticoagulant_drug(addr: Int) | hematology | Physiology | -- |
| fn | anticoagulant_drug_count | anticoagulant_drug_count() | hematology | Physiology | -- |
| struct | FibrinolyticComponent | struct FibrinolyticComponent | hematology | Physiology | -- |
| fn | fib | fib(addr: Int, nm: String, up: String, gn: String, ct: String, mech: String, clin: String) | hematology | Physiology | -- |
| fn | lookup_fibrinolytic | lookup_fibrinolytic(addr: Int) | hematology | Physiology | -- |
| fn | fibrinolytic_count | fibrinolytic_count() | hematology | Physiology | -- |
| struct | BloodType | struct BloodType | hematology | Physiology | -- |
| fn | bt | bt(addr: Int, abo: String, ag: String, ab: String, gen: String, don: String, rec: String, freq: String, enz: String) | hematology | Physiology | -- |
| fn | lookup_blood_type | lookup_blood_type(addr: Int) | hematology | Physiology | -- |
| fn | blood_type_count | blood_type_count() | hematology | Physiology | -- |
| struct | RhSystem | struct RhSystem | hematology | Physiology | -- |
| fn | rh_positive | rh_positive() | hematology | Physiology | -- |
| fn | rh_negative | rh_negative() | hematology | Physiology | -- |
| struct | CBCParameter | struct CBCParameter | hematology | Physiology | -- |
| fn | cbc | cbc(addr: Int, nm: String, abbr: String, unit: String, nrm: String, nrf: String, meas: String, elev: String, decr: String) | hematology | Physiology | -- |
| fn | lookup_cbc | lookup_cbc(addr: Int) | hematology | Physiology | -- |
| fn | cbc_parameter_count | cbc_parameter_count() | hematology | Physiology | -- |
| fn | cbc_by_abbreviation | cbc_by_abbreviation(abbr: String) | hematology | Physiology | -- |
| fn | classify_anemia_by_mcv | classify_anemia_by_mcv(mcv: Float) | hematology | Physiology | -- |
| fn | is_anemic_male | is_anemic_male(hgb: Float) | hematology | Physiology | -- |
| fn | is_anemic_female | is_anemic_female(hgb: Float) | hematology | Physiology | -- |
| fn | is_thrombocytopenic | is_thrombocytopenic(plt: Float) | hematology | Physiology | -- |
| fn | is_neutropenic | is_neutropenic(anc: Float) | hematology | Physiology | -- |
| fn | is_leukocytosis | is_leukocytosis(wbc: Float) | hematology | Physiology | -- |
| fn | differentiate_microcytic | differentiate_microcytic(rdw: Float, mcv: Float) | hematology | Physiology | -- |
| fn | calculate_mentzer_index | calculate_mentzer_index(mcv: Float, rbc_count: Float) | hematology | Physiology | -- |
| fn | interpret_mentzer | interpret_mentzer(index_val: Float) | hematology | Physiology | -- |
| fn | hematology_total_structs | hematology_total_structs() | hematology | Physiology | -- |
| fn | hematology_total_lookup_entries | hematology_total_lookup_entries() | hematology | Physiology | -- |
| struct | NephronSegment | struct NephronSegment | renal | Physiology | -- |
| struct | RenalTransporter | struct RenalTransporter | renal | Physiology | -- |
| struct | GlomerularParameter | struct GlomerularParameter | renal | Physiology | -- |
| struct | RAASComponent | struct RAASComponent | renal | Physiology | -- |
| struct | Diuretic | struct Diuretic | renal | Physiology | -- |
| struct | CKDStage | struct CKDStage | renal | Physiology | -- |
| struct | AcidBaseProcess | struct AcidBaseProcess | renal | Physiology | -- |
| struct | ClinicalSyndrome | struct ClinicalSyndrome | renal | Physiology | -- |
| struct | HormonalRegulator | struct HormonalRegulator | renal | Physiology | -- |
| fn | nseg | nseg(n: String, ab: String, ep: String, pw: String, pn: String, pf: String, kt: String, fr: Float, ci: String) | renal | Physiology | -- |
| fn | rtrans | rtrans(n: String, g: String, ac: String, seg: String, mem: String, im: String, st: String, es: String, inh: String, cr: String, ci: String) | renal | Physiology | -- |
| fn | gparam | gparam(n: String, nv: Float, u: String, d: String, de: String, ci: String) | renal | Physiology | -- |
| fn | raas | raas(sn: Int, n: String, g: String, ac: String, so: String, act: String, ct: String, ci: String) | renal | Physiology | -- |
| fn | diur | diur(n: String, dc: String, ts: String, tt: String, mech: String, se: String, cu: String, ci: String) | renal | Physiology | -- |
| fn | ckd | ckd(sl: String, gl: Float, gh: Float, de: String, ac: String, ci: String) | renal | Physiology | -- |
| fn | abproc | abproc(n: String, seg: String, et: String, ac: String, mech: String, ne: String, ci: String) | renal | Physiology | -- |
| fn | csyn | csyn(n: String, cat: String, pp: String, kf: String, pr: String, co: String, ex: String, ci: String) | renal | Physiology | -- |
| fn | hreg | hreg(n: String, so: String, tr: String, re: String, ra: String, eff: String, nr: String, ci: String) | renal | Physiology | -- |
| fn | lookup_nephron_segment | lookup_nephron_segment(seg: String) | renal | Physiology | -- |
| fn | lookup_starling_force | lookup_starling_force(force: String) | renal | Physiology | -- |
| fn | filtration_barrier_layers | filtration_barrier_layers() | renal | Physiology | -- |
| fn | lookup_transporter | lookup_transporter(name: String) | renal | Physiology | -- |
| fn | lookup_raas | lookup_raas(step: Int) | renal | Physiology | -- |
| fn | lookup_hormonal_regulator | lookup_hormonal_regulator(hormone: String) | renal | Physiology | -- |
| fn | lookup_acid_base | lookup_acid_base(process: String) | renal | Physiology | -- |
| fn | medullary_gradient | medullary_gradient() | renal | Physiology | -- |
| fn | urine_osmolality_range | urine_osmolality_range() | renal | Physiology | -- |
| fn | free_water_clearance_concept | free_water_clearance_concept() | renal | Physiology | -- |
| fn | lookup_diuretic | lookup_diuretic(name: String) | renal | Physiology | -- |
| fn | lookup_ckd_stage | lookup_ckd_stage(gfr_category: String) | renal | Physiology | -- |
| fn | lookup_aki_category | lookup_aki_category(category: String) | renal | Physiology | -- |
| fn | lookup_clinical_syndrome | lookup_clinical_syndrome(syndrome: String) | renal | Physiology | -- |
| fn | tubuloglomerular_feedback | tubuloglomerular_feedback() | renal | Physiology | -- |
| fn | myogenic_response | myogenic_response() | renal | Physiology | -- |
| fn | gfr_normal | gfr_normal() | renal | Physiology | -- |
| fn | gfr_units | gfr_units() | renal | Physiology | -- |
| fn | ckd_epi_citation | ckd_epi_citation() | renal | Physiology | -- |
| fn | fractional_excretion_na_formula | fractional_excretion_na_formula() | renal | Physiology | -- |
| fn | renal_clearance_formula | renal_clearance_formula() | renal | Physiology | -- |
| fn | nephron_segment_count | nephron_segment_count() | renal | Physiology | -- |
| fn | transporter_count | transporter_count() | renal | Physiology | -- |
| fn | starling_force_count | starling_force_count() | renal | Physiology | -- |
| fn | raas_step_count | raas_step_count() | renal | Physiology | -- |
| fn | diuretic_count | diuretic_count() | renal | Physiology | -- |
| fn | ckd_stage_count | ckd_stage_count() | renal | Physiology | -- |
| fn | acid_base_process_count | acid_base_process_count() | renal | Physiology | -- |
| fn | hormonal_regulator_count | hormonal_regulator_count() | renal | Physiology | -- |
| fn | clinical_syndrome_count | clinical_syndrome_count() | renal | Physiology | -- |
| fn | aki_category_count | aki_category_count() | renal | Physiology | -- |
| struct | GlycolysisStep | struct GlycolysisStep | glycolysis | Cell Biology | -- |
| struct | InsulinPathwayStep | struct InsulinPathwayStep | glycolysis | Cell Biology | -- |
| fn | gstep | gstep(sn: Int, en: String, ea: String, eg: String, su: String, pr: String, at: Int, re: Bool, rg: Bool, rn: String, ci: String) | glycolysis | Cell Biology | -- |
| fn | istep | istep(sn: Int, co: String, ac: String, ge: String, act: String, ci: String) | glycolysis | Cell Biology | -- |
| fn | glycolysis_step | glycolysis_step(step: Int) | glycolysis | Cell Biology | -- |
| fn | glycolysis_net_atp | glycolysis_net_atp() | glycolysis | Cell Biology | -- |
| fn | glycolysis_net_nadh | glycolysis_net_nadh() | glycolysis | Cell Biology | -- |
| fn | insulin_pathway_step | insulin_pathway_step(step: Int) | glycolysis | Cell Biology | -- |
| fn | insulin_pathway_step_count | insulin_pathway_step_count() | glycolysis | Cell Biology | -- |
| fn | glycolysis_step_count | glycolysis_step_count() | glycolysis | Cell Biology | -- |
| fn | pyruvate_fate | pyruvate_fate(condition: String) | glycolysis | Cell Biology | -- |
| fn | glucose_transporter | glucose_transporter(name: String) | glycolysis | Cell Biology | -- |
| struct | ETCComplex | struct ETCComplex | mitochondria | Cell Biology | -- |
| fn | etc | etc(cn: String, n: String, sc: Int, ka: String, kg: String, ed: String, ea: String, pp: Int, inh: String, dl: String, ci: String) | mitochondria | Cell Biology | -- |
| fn | lookup_etc_complex | lookup_etc_complex(name: String) | mitochondria | Cell Biology | -- |
| fn | atp_synthase_mechanism | atp_synthase_mechanism() | mitochondria | Cell Biology | -- |
| fn | atp_per_glucose | atp_per_glucose() | mitochondria | Cell Biology | -- |
| fn | tca_enzyme | tca_enzyme(step: Int) | mitochondria | Cell Biology | -- |
| fn | tca_per_acetyl_coa | tca_per_acetyl_coa() | mitochondria | Cell Biology | -- |
| fn | tca_step_count | tca_step_count() | mitochondria | Cell Biology | -- |
| fn | etc_complex_count | etc_complex_count() | mitochondria | Cell Biology | -- |
| fn | uncoupling_protein | uncoupling_protein(name: String) | mitochondria | Cell Biology | -- |
| struct | Hormone | struct Hormone | endocrine | Physiology | -- |
| struct | Enzyme | struct Enzyme | endocrine | Physiology | -- |
| struct | Receptor | struct Receptor | endocrine | Physiology | -- |
| struct | FeedbackAxis | struct FeedbackAxis | endocrine | Physiology | -- |
| struct | AdrenalZone | struct AdrenalZone | endocrine | Physiology | -- |
| struct | CatecholamineSynthStep | struct CatecholamineSynthStep | endocrine | Physiology | -- |
| struct | IsletCell | struct IsletCell | endocrine | Physiology | -- |
| struct | ReceptorClass | struct ReceptorClass | endocrine | Physiology | -- |
| fn | hormone | hormone(n: String, sg: String, t: String, m: String, cl: String, ci: String) | endocrine | Physiology | -- |
| fn | enzyme | enzyme(n: String, g: String, u: String, r: String, cl: String, ci: String) | endocrine | Physiology | -- |
| fn | receptor | receptor(n: String, rt: String, u: String, l: String, s: String, cl: String, ci: String) | endocrine | Physiology | -- |
| fn | feedback_axis | feedback_axis(n: String, s1: String, s2: String, s3: String, nf: String, ce: String, cd: String, ci: String) | endocrine | Physiology | -- |
| fn | adrenal_zone | adrenal_zone(zn: String, lo: String, pp: String, rg: String, ke: String, eu: String, cl: String, ci: String) | endocrine | Physiology | -- |
| fn | cat_step | cat_step(sn: Int, su: String, pr: String, en: String, eg: String, eu: String, co: String, lo: String, ci: String) | endocrine | Physiology | -- |
| fn | islet_cell | islet_cell(ct: String, pct: Float, hp: String, ps: String, pa: String, cl: String, ci: String) | endocrine | Physiology | -- |
| fn | receptor_class | receptor_class(cn: String, he: String, lo: String, sm: String, os: String, du: String, ci: String) | endocrine | Physiology | -- |
| fn | lookup_hypothalamic_hormone | lookup_hypothalamic_hormone(name: String) | endocrine | Physiology | -- |
| fn | lookup_anterior_pituitary | lookup_anterior_pituitary(name: String) | endocrine | Physiology | -- |
| fn | lookup_posterior_pituitary | lookup_posterior_pituitary(name: String) | endocrine | Physiology | -- |
| fn | lookup_thyroid_hormone | lookup_thyroid_hormone(name: String) | endocrine | Physiology | -- |
| fn | lookup_thyroid_enzyme | lookup_thyroid_enzyme(name: String) | endocrine | Physiology | -- |
| fn | lookup_parathyroid | lookup_parathyroid(name: String) | endocrine | Physiology | -- |
| fn | lookup_adrenal_zone | lookup_adrenal_zone(name: String) | endocrine | Physiology | -- |
| fn | lookup_adrenal_cortex_hormone | lookup_adrenal_cortex_hormone(name: String) | endocrine | Physiology | -- |
| fn | lookup_catecholamine_step | lookup_catecholamine_step(step: Int) | endocrine | Physiology | -- |
| fn | lookup_adrenal_medulla_hormone | lookup_adrenal_medulla_hormone(name: String) | endocrine | Physiology | -- |
| fn | lookup_islet_cell | lookup_islet_cell(name: String) | endocrine | Physiology | -- |
| fn | lookup_pancreatic_hormone | lookup_pancreatic_hormone(name: String) | endocrine | Physiology | -- |
| fn | lookup_gonadal_hormone | lookup_gonadal_hormone(name: String) | endocrine | Physiology | -- |
| fn | lookup_other_hormone | lookup_other_hormone(name: String) | endocrine | Physiology | -- |
| fn | lookup_feedback_axis | lookup_feedback_axis(name: String) | endocrine | Physiology | -- |
| fn | lookup_receptor_class | lookup_receptor_class(name: String) | endocrine | Physiology | -- |
| fn | lookup_endocrine_enzyme | lookup_endocrine_enzyme(name: String) | endocrine | Physiology | -- |
| fn | lookup_endocrine_receptor | lookup_endocrine_receptor(name: String) | endocrine | Physiology | -- |
| fn | lookup_hormone | lookup_hormone(name: String) | endocrine | Physiology | -- |
| fn | hypothalamic_hormone_count | hypothalamic_hormone_count() | endocrine | Physiology | -- |
| fn | anterior_pituitary_hormone_count | anterior_pituitary_hormone_count() | endocrine | Physiology | -- |
| fn | posterior_pituitary_hormone_count | posterior_pituitary_hormone_count() | endocrine | Physiology | -- |
| fn | thyroid_hormone_count | thyroid_hormone_count() | endocrine | Physiology | -- |
| fn | parathyroid_hormone_count | parathyroid_hormone_count() | endocrine | Physiology | -- |
| fn | adrenal_cortex_hormone_count | adrenal_cortex_hormone_count() | endocrine | Physiology | -- |
| fn | adrenal_medulla_hormone_count | adrenal_medulla_hormone_count() | endocrine | Physiology | -- |
| fn | pancreatic_hormone_count | pancreatic_hormone_count() | endocrine | Physiology | -- |
| fn | gonadal_hormone_count | gonadal_hormone_count() | endocrine | Physiology | -- |
| fn | other_hormone_count | other_hormone_count() | endocrine | Physiology | -- |
| fn | total_hormone_count | total_hormone_count() | endocrine | Physiology | -- |
| fn | catecholamine_step_count | catecholamine_step_count() | endocrine | Physiology | -- |
| fn | feedback_axis_count | feedback_axis_count() | endocrine | Physiology | -- |
| fn | receptor_class_count | receptor_class_count() | endocrine | Physiology | -- |
| fn | adrenal_zone_count | adrenal_zone_count() | endocrine | Physiology | -- |
| fn | islet_cell_type_count | islet_cell_type_count() | endocrine | Physiology | -- |
| fn | endocrine_enzyme_count | endocrine_enzyme_count() | endocrine | Physiology | -- |
| fn | endocrine_receptor_count | endocrine_receptor_count() | endocrine | Physiology | -- |
| fn | thyroid_enzyme_count | thyroid_enzyme_count() | endocrine | Physiology | -- |
| fn | is_steroid_hormone | is_steroid_hormone(name: String) | endocrine | Physiology | -- |
| fn | is_peptide_hormone | is_peptide_hormone(name: String) | endocrine | Physiology | -- |
| fn | is_amine_hormone | is_amine_hormone(name: String) | endocrine | Physiology | -- |
| fn | uses_nuclear_receptor | uses_nuclear_receptor(name: String) | endocrine | Physiology | -- |
| fn | uses_membrane_receptor | uses_membrane_receptor(name: String) | endocrine | Physiology | -- |
| struct | Aminotransferase | struct Aminotransferase | amino_acid_metabolism | Metabolism | -- |
| struct | UreaCycleStep | struct UreaCycleStep | amino_acid_metabolism | Metabolism | -- |
| struct | AminoAcidCatabolicFate | struct AminoAcidCatabolicFate | amino_acid_metabolism | Metabolism | -- |
| struct | SpecializedPathway | struct SpecializedPathway | amino_acid_metabolism | Metabolism | -- |
| struct | OneCarbonComponent | struct OneCarbonComponent | amino_acid_metabolism | Metabolism | -- |
| struct | BCAAMetabolism | struct BCAAMetabolism | amino_acid_metabolism | Metabolism | -- |
| struct | NitrogenBalance | struct NitrogenBalance | amino_acid_metabolism | Metabolism | -- |
| struct | OxidativeDeamination | struct OxidativeDeamination | amino_acid_metabolism | Metabolism | -- |
| fn | atrans | atrans(addr: Int, nm: String, ab: String, acc: String, gn: String, cof: String, ad: String, aa: String, pk: String, pa: String, ti: String, cl: String, ci: String) | amino_acid_metabolism | Metabolism | -- |
| fn | ucs | ucs(sn: Int, en: String, ea: String, acc: String, gn: String, loc: String, su: String, pr: String, cof: String, atp: Int, reg: String, def: String, ci: String) | amino_acid_metabolism | Metabolism | -- |
| fn | aafate | aafate(addr: Int, c1: String, c3: String, nm: String, ess: Bool, glu: Bool, ket: Bool, ep: String, ke: String, ka: String, cn: String, ci: String) | amino_acid_metabolism | Metabolism | -- |
| fn | spath | spath(addr: Int, nm: String, su: String, pr: String, en: String, ea: String, eg: String, cof: String, ti: String, dd: String, cn: String, ci: String) | amino_acid_metabolism | Metabolism | -- |
| fn | ocarb | ocarb(addr: Int, nm: String, ab: String, rl: String, en: String, ea: String, eg: String, cof: String, cl: String, ci: String) | amino_acid_metabolism | Metabolism | -- |
| fn | bcaa | bcaa(addr: Int, aa: String, c1: String, glu: Bool, ket: Bool, bp: String, bk: String, fp: String, ep: String, ci: String) | amino_acid_metabolism | Metabolism | -- |
| fn | nbal | nbal(cond: String, bt: String, nio: String, mech: String, cl: String, ci: String) | amino_acid_metabolism | Metabolism | -- |
| fn | oxdeam | oxdeam(addr: Int, en: String, acc: String, gn: String, su: String, pk: String, pn: String, co: String, dir: String, loc: String, act: String, inh: String, cl: String, ci: String) | amino_acid_metabolism | Metabolism | -- |
| fn | lookup_aminotransferase | lookup_aminotransferase(addr: Int) | amino_acid_metabolism | Metabolism | -- |
| fn | plp_cofactor_mechanism | plp_cofactor_mechanism() | amino_acid_metabolism | Metabolism | -- |
| fn | lookup_oxidative_deamination | lookup_oxidative_deamination(addr: Int) | amino_acid_metabolism | Metabolism | -- |
| fn | ammonia_toxicity | ammonia_toxicity() | amino_acid_metabolism | Metabolism | -- |
| fn | urea_cycle_step | urea_cycle_step(step: Int) | amino_acid_metabolism | Metabolism | -- |
| fn | urea_cycle_net_reaction | urea_cycle_net_reaction() | amino_acid_metabolism | Metabolism | -- |
| fn | nag_activation | nag_activation() | amino_acid_metabolism | Metabolism | -- |
| fn | hyperammonemia_causes | hyperammonemia_causes(cause: String) | amino_acid_metabolism | Metabolism | -- |
| fn | amino_acid_catabolic_fate | amino_acid_catabolic_fate(addr: Int) | amino_acid_metabolism | Metabolism | -- |
| fn | glucogenic_amino_acids | glucogenic_amino_acids() | amino_acid_metabolism | Metabolism | -- |
| fn | ketogenic_amino_acids | ketogenic_amino_acids() | amino_acid_metabolism | Metabolism | -- |
| fn | essential_amino_acids | essential_amino_acids() | amino_acid_metabolism | Metabolism | -- |
| fn | specialized_pathway | specialized_pathway(addr: Int) | amino_acid_metabolism | Metabolism | -- |
| fn | one_carbon_component | one_carbon_component(addr: Int) | amino_acid_metabolism | Metabolism | -- |
| fn | methyl_trap_hypothesis | methyl_trap_hypothesis() | amino_acid_metabolism | Metabolism | -- |
| fn | neural_tube_defect_prevention | neural_tube_defect_prevention() | amino_acid_metabolism | Metabolism | -- |
| fn | clinical_folate_b12 | clinical_folate_b12(condition: String) | amino_acid_metabolism | Metabolism | -- |
| fn | bcaa_metabolism | bcaa_metabolism(addr: Int) | amino_acid_metabolism | Metabolism | -- |
| fn | bcat_info | bcat_info() | amino_acid_metabolism | Metabolism | -- |
| fn | bckdh_info | bckdh_info() | amino_acid_metabolism | Metabolism | -- |
| fn | maple_syrup_urine_disease | maple_syrup_urine_disease() | amino_acid_metabolism | Metabolism | -- |
| fn | nitrogen_balance | nitrogen_balance(condition: String) | amino_acid_metabolism | Metabolism | -- |
| fn | protein_turnover_rate | protein_turnover_rate() | amino_acid_metabolism | Metabolism | -- |
| fn | protein_quality | protein_quality(source: String) | amino_acid_metabolism | Metabolism | -- |
| fn | aminotransferase_count | aminotransferase_count() | amino_acid_metabolism | Metabolism | -- |
| fn | urea_cycle_step_count | urea_cycle_step_count() | amino_acid_metabolism | Metabolism | -- |
| fn | oxidative_deamination_count | oxidative_deamination_count() | amino_acid_metabolism | Metabolism | -- |
| fn | amino_acid_catabolic_fate_count | amino_acid_catabolic_fate_count() | amino_acid_metabolism | Metabolism | -- |
| fn | specialized_pathway_count | specialized_pathway_count() | amino_acid_metabolism | Metabolism | -- |
| fn | one_carbon_component_count | one_carbon_component_count() | amino_acid_metabolism | Metabolism | -- |
| fn | bcaa_count | bcaa_count() | amino_acid_metabolism | Metabolism | -- |
| fn | nitrogen_balance_condition_count | nitrogen_balance_condition_count() | amino_acid_metabolism | Metabolism | -- |
| struct | FASynthStep | struct FASynthStep | lipid_metabolism | Metabolism | -- |
| fn | fas | fas(sn: Int, en: String, ea: String, eg: String, su: String, pr: String, co: String, re: Bool, rg: Bool, rn: String, ci: String) | lipid_metabolism | Metabolism | -- |
| fn | fa_synthesis_step | fa_synthesis_step(step: Int) | lipid_metabolism | Metabolism | -- |
| fn | fa_synthesis_nadph_cost | fa_synthesis_nadph_cost() | lipid_metabolism | Metabolism | -- |
| fn | fa_synthesis_atp_cost | fa_synthesis_atp_cost() | lipid_metabolism | Metabolism | -- |
| fn | fa_synthesis_acetyl_coa_cost | fa_synthesis_acetyl_coa_cost() | lipid_metabolism | Metabolism | -- |
| fn | fa_synthesis_step_count | fa_synthesis_step_count() | lipid_metabolism | Metabolism | -- |
| struct | BetaOxStep | struct BetaOxStep | lipid_metabolism | Metabolism | -- |
| fn | box_step | box_step(sn: Int, ph: String, en: String, ea: String, eg: String, su: String, pr: String, co: String, ep: String, rn: String, ci: String) | lipid_metabolism | Metabolism | -- |
| fn | beta_oxidation_step | beta_oxidation_step(step: Int) | lipid_metabolism | Metabolism | -- |
| fn | palmitate_oxidation_atp | palmitate_oxidation_atp() | lipid_metabolism | Metabolism | -- |
| fn | palmitate_beta_ox_cycles | palmitate_beta_ox_cycles() | lipid_metabolism | Metabolism | -- |
| fn | palmitate_acetyl_coa_yield | palmitate_acetyl_coa_yield() | lipid_metabolism | Metabolism | -- |
| fn | beta_oxidation_step_count | beta_oxidation_step_count() | lipid_metabolism | Metabolism | -- |
| struct | KetoneStep | struct KetoneStep | lipid_metabolism | Metabolism | -- |
| fn | kstep | kstep(sn: Int, ph: String, en: String, ea: String, eg: String, su: String, pr: String, ti: String, cn: String, ci: String) | lipid_metabolism | Metabolism | -- |
| fn | ketone_step | ketone_step(step: Int) | lipid_metabolism | Metabolism | -- |
| fn | ketone_step_count | ketone_step_count() | lipid_metabolism | Metabolism | -- |
| fn | dka_context | dka_context() | lipid_metabolism | Metabolism | -- |
| fn | ketone_atp_per_acetoacetate | ketone_atp_per_acetoacetate() | lipid_metabolism | Metabolism | -- |
| fn | ketone_atp_per_bhb | ketone_atp_per_bhb() | lipid_metabolism | Metabolism | -- |
| struct | CholesterolStep | struct CholesterolStep | lipid_metabolism | Metabolism | -- |
| fn | chol | chol(sn: Int, en: String, ea: String, eg: String, su: String, pr: String, co: String, rg: Bool, rn: String, cn: String, ci: String) | lipid_metabolism | Metabolism | -- |
| fn | cholesterol_step | cholesterol_step(step: Int) | lipid_metabolism | Metabolism | -- |
| fn | cholesterol_step_count | cholesterol_step_count() | lipid_metabolism | Metabolism | -- |
| fn | srebp_regulation | srebp_regulation() | lipid_metabolism | Metabolism | -- |
| fn | statin_mechanism | statin_mechanism() | lipid_metabolism | Metabolism | -- |
| struct | Lipoprotein | struct Lipoprotein | lipid_metabolism | Metabolism | -- |
| fn | lipo | lipo(n: String, dr: String, di: String, pl: String, ka: String, kaa: String, so: String, fn_note: String, re: String, cn: String, ci: String) | lipid_metabolism | Metabolism | -- |
| fn | lookup_lipoprotein | lookup_lipoprotein(name: String) | lipid_metabolism | Metabolism | -- |
| fn | lipoprotein_count | lipoprotein_count() | lipid_metabolism | Metabolism | -- |
| fn | apolipoprotein_info | apolipoprotein_info(name: String) | lipid_metabolism | Metabolism | -- |
| fn | familial_hypercholesterolemia | familial_hypercholesterolemia() | lipid_metabolism | Metabolism | -- |
| fn | atherosclerosis_pathogenesis | atherosclerosis_pathogenesis() | lipid_metabolism | Metabolism | -- |
| struct | EicosanoidStep | struct EicosanoidStep | lipid_metabolism | Metabolism | -- |
| fn | eico | eico(sn: Int, pw: String, en: String, ea: String, eg: String, su: String, pr: String, inh: String, cn: String, ci: String) | lipid_metabolism | Metabolism | -- |
| fn | eicosanoid_step | eicosanoid_step(step: Int) | lipid_metabolism | Metabolism | -- |
| fn | eicosanoid_step_count | eicosanoid_step_count() | lipid_metabolism | Metabolism | -- |
| fn | aspirin_mechanism | aspirin_mechanism() | lipid_metabolism | Metabolism | -- |
| fn | nsaid_comparison | nsaid_comparison(drug: String) | lipid_metabolism | Metabolism | -- |
| fn | lipid_module_total_steps | lipid_module_total_steps() | lipid_metabolism | Metabolism | -- |
| fn | lipid_module_total_enzymes | lipid_module_total_enzymes() | lipid_metabolism | Metabolism | -- |
| fn | lipid_module_sections | lipid_module_sections() | lipid_metabolism | Metabolism | -- |
| fn | fed_vs_fasted_summary | fed_vs_fasted_summary() | lipid_metabolism | Metabolism | -- |
| fn | omega3_vs_omega6 | omega3_vs_omega6() | lipid_metabolism | Metabolism | -- |
| fn | pcsk9_mechanism | pcsk9_mechanism() | lipid_metabolism | Metabolism | -- |
| struct | Bcl2FamilyMember | struct Bcl2FamilyMember | apoptosis_biology | Cell Biology | -- |
| struct | DeathReceptor | struct DeathReceptor | apoptosis_biology | Cell Biology | -- |
| struct | Caspase | struct Caspase | apoptosis_biology | Cell Biology | -- |
| struct | ApoptoticEvent | struct ApoptoticEvent | apoptosis_biology | Cell Biology | -- |
| struct | ApoptosisRegulator | struct ApoptosisRegulator | apoptosis_biology | Cell Biology | -- |
| struct | ClinicalContext | struct ClinicalContext | apoptosis_biology | Cell Biology | -- |
| fn | bcl2 | bcl2(n: String, g: String, a: String, fc: String, bh: String, fd: String, m: String, cr: String, ci: String) | apoptosis_biology | Cell Biology | -- |
| fn | dreceptor | dreceptor(n: String, al: String, a: String, l: String, la: String, ad: String, ic: String, dd: String, cr: String, ci: String) | apoptosis_biology | Cell Biology | -- |
| fn | caspase | caspase(n: String, g: String, a: String, cc: String, ac: String, sub: String, cs: String, ib: String, cr: String, ci: String) | apoptosis_biology | Cell Biology | -- |
| fn | aevent | aevent(n: String, et: String, kp: String, ka: String, m: String, s: String, dm: String, ci: String) | apoptosis_biology | Cell Biology | -- |
| fn | regulator | regulator(n: String, g: String, a: String, rc: String, t: String, m: String, pa: String, cr: String, ci: String) | apoptosis_biology | Cell Biology | -- |
| fn | clinical | clinical(dc: String, dn: String, ad: String, kg: String, ka: String, ts: String, ci: String) | apoptosis_biology | Cell Biology | -- |
| fn | lookup_bcl2 | lookup_bcl2(name: String) | apoptosis_biology | Cell Biology | -- |
| fn | lookup_death_receptor | lookup_death_receptor(name: String) | apoptosis_biology | Cell Biology | -- |
| fn | lookup_activation_complex | lookup_activation_complex(name: String) | apoptosis_biology | Cell Biology | -- |
| fn | lookup_caspase | lookup_caspase(name: String) | apoptosis_biology | Cell Biology | -- |
| fn | lookup_apoptotic_event | lookup_apoptotic_event(name: String) | apoptosis_biology | Cell Biology | -- |
| fn | lookup_regulator | lookup_regulator(name: String) | apoptosis_biology | Cell Biology | -- |
| fn | lookup_clinical | lookup_clinical(name: String) | apoptosis_biology | Cell Biology | -- |
| fn | intrinsic_pathway_summary | intrinsic_pathway_summary() | apoptosis_biology | Cell Biology | -- |
| fn | extrinsic_pathway_summary | extrinsic_pathway_summary() | apoptosis_biology | Cell Biology | -- |
| fn | type_I_vs_type_II | type_I_vs_type_II() | apoptosis_biology | Cell Biology | -- |
| fn | apoptosis_vs_necroptosis | apoptosis_vs_necroptosis() | apoptosis_biology | Cell Biology | -- |
| fn | bcl2_family_count | bcl2_family_count() | apoptosis_biology | Cell Biology | -- |
| fn | death_receptor_count | death_receptor_count() | apoptosis_biology | Cell Biology | -- |
| fn | caspase_count | caspase_count() | apoptosis_biology | Cell Biology | -- |
| fn | initiator_caspase_count | initiator_caspase_count() | apoptosis_biology | Cell Biology | -- |
| fn | executioner_caspase_count | executioner_caspase_count() | apoptosis_biology | Cell Biology | -- |
| fn | apoptotic_event_count | apoptotic_event_count() | apoptosis_biology | Cell Biology | -- |
| fn | activation_complex_count | activation_complex_count() | apoptosis_biology | Cell Biology | -- |
| fn | regulator_count | regulator_count() | apoptosis_biology | Cell Biology | -- |
| fn | clinical_context_count | clinical_context_count() | apoptosis_biology | Cell Biology | -- |
| fn | total_protein_entries | total_protein_entries() | apoptosis_biology | Cell Biology | -- |
| fn | total_unique_accessions | total_unique_accessions() | apoptosis_biology | Cell Biology | -- |